Wall clock time and date at job start Tue Mar 31 2020 07:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47269 * 2 1 4 4 C 1.53001 * 109.47472 * 120.00952 * 2 1 3 5 5 C 1.50709 * 109.46649 * 297.05058 * 4 2 1 6 6 H 1.08004 * 120.00116 * 4.91838 * 5 4 2 7 7 C 1.37875 * 119.99673 * 184.91334 * 5 4 2 8 8 N 1.31514 * 120.00148 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99846 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47373 * 89.99870 * 9 7 5 11 11 H 1.48496 * 109.47355 * 210.00290 * 9 7 5 12 12 H 1.48503 * 109.47049 * 330.00217 * 9 7 5 13 13 N 1.46904 * 109.46843 * 240.00670 * 2 1 3 14 14 C 1.46951 * 111.00018 * 187.89069 * 13 2 1 15 15 C 1.53052 * 109.36384 * 176.81245 * 14 13 2 16 16 N 1.46955 * 109.36792 * 58.39841 * 15 14 13 17 17 C 1.46896 * 111.00279 * 176.81391 * 16 15 14 18 18 C 1.52998 * 109.46997 * 287.31816 * 17 16 15 19 19 F 1.39902 * 109.47632 * 66.07939 * 18 17 16 20 20 F 1.39901 * 109.47438 * 186.08334 * 18 17 16 21 21 F 1.39902 * 109.46909 * 306.07837 * 18 17 16 22 22 C 1.46960 * 110.87789 * 300.67869 * 16 15 14 23 23 H 1.08992 * 109.49342 * 299.35330 * 22 16 15 24 24 C 1.52996 * 109.50438 * 179.29704 * 22 16 15 25 25 C 1.46954 * 110.99928 * 64.08564 * 13 2 1 26 26 H 1.08996 * 109.47269 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47482 * 59.99409 * 1 2 3 28 28 H 1.09002 * 109.46540 * 299.99736 * 1 2 3 29 29 H 1.09000 * 109.47203 * 57.04882 * 4 2 1 30 30 H 1.08993 * 109.47062 * 177.05391 * 4 2 1 31 31 H 0.96995 * 119.99896 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.48812 * 296.77623 * 14 13 2 33 33 H 1.08995 * 109.49475 * 56.84124 * 14 13 2 34 34 H 1.09006 * 109.48790 * 298.43138 * 15 14 13 35 35 H 1.09004 * 109.50849 * 178.37854 * 15 14 13 36 36 H 1.09005 * 109.46985 * 47.31064 * 17 16 15 37 37 H 1.08997 * 109.47709 * 167.31553 * 17 16 15 38 38 H 1.09005 * 109.47544 * 300.09829 * 24 22 16 39 39 H 1.08997 * 109.47464 * 60.10163 * 24 22 16 40 40 H 1.09006 * 109.47021 * 180.10045 * 24 22 16 41 41 H 1.08995 * 109.49207 * 303.15701 * 25 13 2 42 42 H 1.08997 * 109.49130 * 63.20764 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.5983 0.0298 2.4786 6 1 0.9466 0.8858 2.3834 7 6 2.0261 -0.3757 3.7250 8 7 2.8200 -1.4177 3.8410 9 14 1.4779 0.5550 5.2491 10 1 0.2165 -0.0364 5.7633 11 1 2.5304 0.4602 6.2923 12 1 1.2509 1.9812 4.9032 13 7 2.0196 -0.6924 -1.1996 14 6 3.4764 -0.8773 -1.1432 15 6 3.9351 -1.6701 -2.3694 16 7 3.5454 -0.9495 -3.5894 17 6 4.0349 -1.6418 -4.7889 18 6 5.5497 -1.4579 -4.9014 19 9 6.1794 -2.1143 -3.8385 20 9 5.9962 -1.9970 -6.1127 21 9 5.8584 -0.0942 -4.8560 22 6 2.0886 -0.7646 -3.6457 23 1 1.5985 -1.7381 -3.6535 24 6 1.7198 0.0027 -4.9170 25 6 1.6298 0.0283 -2.4195 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3632 0.5138 0.8901 29 1 1.6342 -1.7327 1.2758 30 1 3.1288 -0.7674 1.2230 31 1 3.1212 -1.7028 4.7178 32 1 3.9665 0.0963 -1.1354 33 1 3.7388 -1.4241 -0.2376 34 1 3.4660 -2.6540 -2.3627 35 1 5.0189 -1.7838 -2.3447 36 1 3.8025 -2.7043 -4.7155 37 1 3.5517 -1.2243 -5.6722 38 1 2.2106 0.9759 -4.9093 39 1 2.0466 -0.5621 -5.7900 40 1 0.6393 0.1410 -4.9573 41 1 0.5461 0.1416 -2.4444 42 1 2.0987 1.0122 -2.4262 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351228286.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:47 Heat of formation + Delta-G solvation = -144.331585 kcal Electronic energy + Delta-G solvation = -25249.317779 eV Core-core repulsion = 21235.309001 eV Total energy + Delta-G solvation = -4014.008778 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.16299 -47.74514 -47.56042 -39.57326 -36.54058 -33.21005 -32.54375 -31.48244 -29.13483 -27.66842 -26.36590 -25.32316 -23.23642 -22.40622 -22.09291 -19.79096 -19.04037 -18.60001 -18.50061 -17.53074 -16.70563 -15.78782 -15.42163 -14.91744 -14.73520 -14.55812 -14.44878 -14.26759 -14.15483 -13.97436 -13.83040 -13.76040 -13.50040 -13.18859 -13.00143 -12.35315 -12.14871 -11.98680 -11.93132 -11.75076 -11.39769 -11.31710 -10.99539 -10.95371 -10.85845 -10.69550 -10.30194 -10.18078 -9.92031 -9.18205 -9.02715 -8.62183 -8.34071 -7.72889 -6.00477 -4.01942 2.60801 3.31578 3.38203 3.39787 3.40943 3.73980 3.91344 4.31228 4.32593 4.50413 4.73666 4.87316 4.94697 5.03411 5.22203 5.35593 5.42835 5.53883 5.56899 5.67444 5.68247 5.83026 5.93996 5.99076 6.12405 6.17734 6.31494 6.32462 6.42044 6.66335 6.71602 6.84508 6.92938 7.08707 7.51586 7.58852 7.78658 7.85453 8.05467 8.43040 9.03916 9.61489 11.10980 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.024476 B = 0.003699 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.720331 B = 7568.810041 C = 8356.260432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.086 3.914 3 H 0.029 0.971 4 C 0.029 3.971 5 C -0.517 4.517 6 H 0.056 0.944 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.538 5.538 14 C 0.057 3.943 15 C 0.039 3.961 16 N -0.529 5.529 17 C 0.002 3.998 18 C 0.457 3.543 19 F -0.181 7.181 20 F -0.188 7.188 21 F -0.173 7.173 22 C 0.088 3.912 23 H 0.055 0.945 24 C -0.151 4.151 25 C 0.060 3.940 26 H 0.053 0.947 27 H 0.031 0.969 28 H 0.066 0.934 29 H 0.021 0.979 30 H 0.023 0.977 31 H 0.260 0.740 32 H 0.037 0.963 33 H 0.099 0.901 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.331 -0.397 -20.013 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.021 4.021 3 H 0.047 0.953 4 C -0.008 4.008 5 C -0.556 4.556 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.263 5.263 14 C -0.071 4.071 15 C -0.088 4.088 16 N -0.255 5.255 17 C -0.128 4.128 18 C 0.402 3.598 19 F -0.163 7.163 20 F -0.170 7.170 21 F -0.154 7.154 22 C -0.020 4.020 23 H 0.073 0.927 24 C -0.208 4.208 25 C -0.068 4.068 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.117 0.883 34 H 0.066 0.934 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.445 -0.489 -19.857 19.915 hybrid contribution 0.073 0.461 0.889 1.004 sum 1.518 -0.028 -18.968 19.028 Atomic orbital electron populations 1.21742 0.95358 1.01495 1.00024 1.21823 0.94973 0.95412 0.89918 0.95344 1.19230 0.96508 0.95773 0.89312 1.21206 1.29580 1.13623 0.91188 0.92590 1.24982 0.95131 0.95142 0.99033 1.69959 1.34246 1.25390 1.23734 0.86625 0.78316 0.80277 0.82968 1.20690 1.21273 1.19934 1.62277 1.11897 1.49864 1.02223 1.22196 0.88167 0.99399 0.97382 1.22709 1.01672 0.95911 0.88555 1.62090 1.14195 1.48534 1.00684 1.23317 0.89282 1.01335 0.98886 1.20558 0.91949 0.74195 0.73072 1.93117 1.85090 1.81322 1.56730 1.93171 1.91272 1.86287 1.46250 1.93203 1.94402 1.31844 1.95957 1.21717 0.85411 0.98992 0.95895 0.92730 1.21958 1.01848 1.01107 0.95933 1.22172 1.00415 0.95170 0.89067 0.92755 0.95048 0.91549 0.96105 0.95833 0.93024 0.94447 0.88286 0.93423 0.88948 0.90192 0.86086 0.91453 0.92594 0.91509 0.90082 0.94466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.86 37.16 0.33 -2.07 16 2 C 0.09 1.76 2.13 -67.71 -0.14 1.61 16 3 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.03 0.73 4.08 -27.88 -0.11 0.62 16 5 C -0.52 -14.22 8.48 -34.44 -0.29 -14.51 16 6 H 0.06 1.50 6.74 -52.48 -0.35 1.14 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.54 -9.50 4.58 -226.49 -1.04 -10.53 16 14 C 0.06 0.99 5.12 -3.77 -0.02 0.97 16 15 C 0.04 0.55 5.30 -3.77 -0.02 0.53 16 16 N -0.53 -6.56 4.30 -226.49 -0.97 -7.54 16 17 C 0.00 0.02 4.93 -3.83 -0.02 0.00 16 18 C 0.46 5.05 3.25 37.16 0.12 5.17 16 19 F -0.18 -2.24 14.48 2.25 0.03 -2.21 16 20 F -0.19 -1.99 17.32 2.25 0.04 -1.95 16 21 F -0.17 -2.19 17.13 2.25 0.04 -2.15 16 22 C 0.09 1.03 2.56 -67.65 -0.17 0.86 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 C -0.15 -1.35 8.93 37.16 0.33 -1.02 16 25 C 0.06 0.87 4.67 -3.77 -0.02 0.85 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.03 0.49 6.43 -51.93 -0.33 0.16 16 28 H 0.07 1.31 6.71 -51.93 -0.35 0.96 16 29 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.02 0.63 6.07 -51.93 -0.32 0.31 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 1.94 5.94 -51.93 -0.31 1.63 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.09 1.28 5.39 -51.93 -0.28 1.00 16 36 H 0.08 0.68 8.04 -51.93 -0.42 0.27 16 37 H 0.12 0.93 5.48 -51.93 -0.28 0.65 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.41 6.04 -51.93 -0.31 0.10 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 1.10 6.26 -51.93 -0.33 0.78 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 330.41 15.07 4.98 4.98 Total: -1.00 -29.32 330.41 -7.54 -36.86 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -6.22 Total: -2.71 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -0.12 Total: -5.44 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: -1.27 Total: -43.80 kcal Atomic # 9 Polarization: -6.42 SS G_CDS: 0.11 Total: -6.31 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.32 -7.54 -36.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351228286.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.470 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds