Wall clock time and date at job start Tue Mar 31 2020 07:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47269 * 2 1 4 4 C 1.53001 * 109.47472 * 120.00952 * 2 1 3 5 5 C 1.50709 * 109.46649 * 297.05058 * 4 2 1 6 6 H 1.08004 * 120.00116 * 4.91838 * 5 4 2 7 7 C 1.37875 * 119.99673 * 184.91334 * 5 4 2 8 8 N 1.31514 * 120.00148 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99846 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47373 * 89.99870 * 9 7 5 11 11 H 1.48496 * 109.47355 * 210.00290 * 9 7 5 12 12 H 1.48503 * 109.47049 * 330.00217 * 9 7 5 13 13 N 1.46904 * 109.46843 * 240.00670 * 2 1 3 14 14 C 1.46951 * 111.00018 * 187.89069 * 13 2 1 15 15 C 1.53052 * 109.36384 * 176.81245 * 14 13 2 16 16 N 1.46955 * 109.36792 * 58.39841 * 15 14 13 17 17 C 1.46896 * 111.00279 * 176.81391 * 16 15 14 18 18 C 1.52998 * 109.46997 * 287.31816 * 17 16 15 19 19 F 1.39902 * 109.47632 * 66.07939 * 18 17 16 20 20 F 1.39901 * 109.47438 * 186.08334 * 18 17 16 21 21 F 1.39902 * 109.46909 * 306.07837 * 18 17 16 22 22 C 1.46960 * 110.87789 * 300.67869 * 16 15 14 23 23 H 1.08992 * 109.49342 * 299.35330 * 22 16 15 24 24 C 1.52996 * 109.50438 * 179.29704 * 22 16 15 25 25 C 1.46954 * 110.99928 * 64.08564 * 13 2 1 26 26 H 1.08996 * 109.47269 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47482 * 59.99409 * 1 2 3 28 28 H 1.09002 * 109.46540 * 299.99736 * 1 2 3 29 29 H 1.09000 * 109.47203 * 57.04882 * 4 2 1 30 30 H 1.08993 * 109.47062 * 177.05391 * 4 2 1 31 31 H 0.96995 * 119.99896 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.48812 * 296.77623 * 14 13 2 33 33 H 1.08995 * 109.49475 * 56.84124 * 14 13 2 34 34 H 1.09006 * 109.48790 * 298.43138 * 15 14 13 35 35 H 1.09004 * 109.50849 * 178.37854 * 15 14 13 36 36 H 1.09005 * 109.46985 * 47.31064 * 17 16 15 37 37 H 1.08997 * 109.47709 * 167.31553 * 17 16 15 38 38 H 1.09005 * 109.47544 * 300.09829 * 24 22 16 39 39 H 1.08997 * 109.47464 * 60.10163 * 24 22 16 40 40 H 1.09006 * 109.47021 * 180.10045 * 24 22 16 41 41 H 1.08995 * 109.49207 * 303.15701 * 25 13 2 42 42 H 1.08997 * 109.49130 * 63.20764 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.5983 0.0298 2.4786 6 1 0.9466 0.8858 2.3834 7 6 2.0261 -0.3757 3.7250 8 7 2.8200 -1.4177 3.8410 9 14 1.4779 0.5550 5.2491 10 1 0.2165 -0.0364 5.7633 11 1 2.5304 0.4602 6.2923 12 1 1.2509 1.9812 4.9032 13 7 2.0196 -0.6924 -1.1996 14 6 3.4764 -0.8773 -1.1432 15 6 3.9351 -1.6701 -2.3694 16 7 3.5454 -0.9495 -3.5894 17 6 4.0349 -1.6418 -4.7889 18 6 5.5497 -1.4579 -4.9014 19 9 6.1794 -2.1143 -3.8385 20 9 5.9962 -1.9970 -6.1127 21 9 5.8584 -0.0942 -4.8560 22 6 2.0886 -0.7646 -3.6457 23 1 1.5985 -1.7381 -3.6535 24 6 1.7198 0.0027 -4.9170 25 6 1.6298 0.0283 -2.4195 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3632 0.5138 0.8901 29 1 1.6342 -1.7327 1.2758 30 1 3.1288 -0.7674 1.2230 31 1 3.1212 -1.7028 4.7178 32 1 3.9665 0.0963 -1.1354 33 1 3.7388 -1.4241 -0.2376 34 1 3.4660 -2.6540 -2.3627 35 1 5.0189 -1.7838 -2.3447 36 1 3.8025 -2.7043 -4.7155 37 1 3.5517 -1.2243 -5.6722 38 1 2.2106 0.9759 -4.9093 39 1 2.0466 -0.5621 -5.7900 40 1 0.6393 0.1410 -4.9573 41 1 0.5461 0.1416 -2.4444 42 1 2.0987 1.0122 -2.4262 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351228286.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:47 Heat of formation + Delta-G solvation = -163.538877 kcal Electronic energy + Delta-G solvation = -25250.150669 eV Core-core repulsion = 21235.309001 eV Total energy + Delta-G solvation = -4014.841668 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.05629 -48.63356 -48.48098 -40.75386 -37.91722 -35.09437 -33.58603 -33.07871 -30.42192 -29.06352 -27.76487 -26.64337 -24.83409 -23.58271 -23.26051 -20.91361 -20.66791 -19.50388 -19.40780 -18.68490 -18.42567 -17.02585 -16.66152 -16.47009 -15.97330 -15.72069 -15.65498 -15.47151 -15.25500 -15.12784 -14.84713 -14.69637 -14.54681 -14.38593 -14.26945 -13.99972 -13.58909 -13.17544 -13.06092 -12.91784 -12.81796 -12.75410 -12.64396 -12.47390 -12.18265 -12.07393 -11.90980 -11.73290 -11.48909 -11.09688 -10.89575 -10.51247 -9.60036 -9.19704 -8.17863 -6.27150 1.40589 1.41435 1.52121 1.75753 2.41028 2.46967 2.88715 3.01404 3.08878 3.16198 3.43781 3.78550 3.94855 3.98982 4.19855 4.24052 4.28881 4.34150 4.40487 4.48098 4.58147 4.68075 4.71794 4.81138 4.84664 4.95177 5.03260 5.05829 5.12646 5.22796 5.36191 5.41705 5.50397 5.68517 5.74015 5.81155 5.84714 6.11872 6.32544 6.37338 6.88666 7.41111 8.94251 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.024476 B = 0.003699 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.720331 B = 7568.810041 C = 8356.260432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.094 3.906 3 H 0.016 0.984 4 C 0.039 3.961 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.002 3.998 8 N -0.932 5.932 9 Si 0.961 3.039 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.264 1.264 13 N -0.541 5.541 14 C 0.060 3.940 15 C 0.051 3.949 16 N -0.540 5.540 17 C 0.007 3.993 18 C 0.455 3.545 19 F -0.192 7.192 20 F -0.184 7.184 21 F -0.184 7.184 22 C 0.091 3.909 23 H 0.058 0.942 24 C -0.144 4.144 25 C 0.059 3.941 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.053 0.947 29 H -0.010 1.010 30 H -0.003 1.003 31 H 0.262 0.738 32 H 0.022 0.978 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.149 0.851 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.019 0.237 -21.899 21.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.013 4.013 3 H 0.034 0.966 4 C 0.002 3.998 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.196 4.196 8 N -0.573 5.573 9 Si 0.786 3.214 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.188 1.188 13 N -0.265 5.265 14 C -0.068 4.068 15 C -0.077 4.077 16 N -0.266 5.266 17 C -0.122 4.122 18 C 0.401 3.599 19 F -0.174 7.174 20 F -0.165 7.165 21 F -0.166 7.166 22 C -0.017 4.017 23 H 0.076 0.924 24 C -0.201 4.201 25 C -0.069 4.069 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.009 0.991 30 H 0.015 0.985 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.166 0.834 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.087 0.152 -21.771 21.771 hybrid contribution 0.542 0.246 1.429 1.548 sum 0.629 0.398 -20.342 20.356 Atomic orbital electron populations 1.21633 0.93463 1.01483 1.01120 1.21547 0.96369 0.94012 0.89391 0.96603 1.19039 0.94744 0.94518 0.91549 1.21620 1.29466 1.13825 0.92229 0.91973 1.25903 0.95137 0.96019 1.02531 1.70102 1.35545 1.27080 1.24565 0.85512 0.77987 0.79268 0.78679 1.19764 1.21040 1.18801 1.62255 1.11774 1.50000 1.02515 1.22058 0.88238 0.98608 0.97933 1.22482 1.01614 0.95327 0.88228 1.61998 1.14865 1.48912 1.00839 1.23432 0.88039 1.02418 0.98348 1.20811 0.92697 0.73556 0.72878 1.93097 1.85437 1.81475 1.57371 1.93179 1.91331 1.86140 1.45865 1.93182 1.94580 1.32807 1.96007 1.21738 0.84848 0.99148 0.95917 0.92377 1.21929 1.02826 1.00547 0.94823 1.22321 1.01215 0.94893 0.88493 0.93248 0.91506 0.92849 0.99126 0.98487 0.92938 0.95995 0.91657 0.93274 0.88856 0.88371 0.83352 0.92060 0.90316 0.90042 0.88694 0.95342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.36 8.86 71.98 0.64 -3.72 16 2 C 0.09 3.96 2.13 44.92 0.10 4.05 16 3 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 4 C 0.04 2.05 4.08 29.85 0.12 2.17 16 5 C -0.53 -30.04 8.48 25.60 0.22 -29.82 16 6 H 0.06 3.35 6.74 -2.91 -0.02 3.33 16 7 C 0.00 0.10 5.46 84.65 0.46 0.56 16 8 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 9 Si 0.96 44.35 29.54 68.60 2.03 46.37 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 13 N -0.54 -19.25 4.58 -870.49 -3.98 -23.24 16 14 C 0.06 2.18 5.12 86.31 0.44 2.63 16 15 C 0.05 1.44 5.30 86.31 0.46 1.90 16 16 N -0.54 -12.40 4.30 -870.48 -3.74 -16.14 16 17 C 0.01 0.11 4.93 86.30 0.43 0.54 16 18 C 0.46 9.24 3.25 71.98 0.23 9.47 16 19 F -0.19 -4.60 14.48 44.97 0.65 -3.95 16 20 F -0.18 -3.48 17.32 44.97 0.78 -2.70 16 21 F -0.18 -4.43 17.13 44.97 0.77 -3.66 16 22 C 0.09 1.91 2.56 44.92 0.12 2.02 16 23 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 24 C -0.14 -2.01 8.93 71.98 0.64 -1.36 16 25 C 0.06 1.60 4.67 86.31 0.40 2.00 16 26 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 1.95 6.43 -2.39 -0.02 1.93 16 28 H 0.05 2.07 6.71 -2.39 -0.02 2.05 16 29 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 30 H 0.00 -0.18 6.07 -2.39 -0.01 -0.19 16 31 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 2.78 5.94 -2.39 -0.01 2.76 16 34 H 0.05 1.36 8.14 -2.38 -0.02 1.35 16 35 H 0.09 2.61 5.39 -2.38 -0.01 2.60 16 36 H 0.10 1.34 8.04 -2.38 -0.02 1.32 16 37 H 0.15 1.64 5.48 -2.39 -0.01 1.63 16 38 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.08 0.76 6.04 -2.39 -0.01 0.75 16 40 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.09 2.32 6.26 -2.39 -0.01 2.30 16 42 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -65.43 330.41 2.06 -63.37 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: 1.02 Total: 6.16 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 4.25 Total: -9.56 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -7.44 Total: -96.03 kcal Atomic # 9 Polarization: -12.51 SS G_CDS: 2.20 Total: -10.31 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -65.43 2.06 -63.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351228286.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.173 kcal (2) G-P(sol) polarization free energy of solvation -65.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds