Wall clock time and date at job start Tue Mar 31 2020 07:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47646 * 2 1 4 4 C 1.53003 * 109.47549 * 239.99945 * 2 1 3 5 5 C 1.50700 * 109.47135 * 176.86065 * 4 2 1 6 6 H 1.07994 * 120.00304 * 354.99000 * 5 4 2 7 7 C 1.37880 * 119.99386 * 174.71381 * 5 4 2 8 8 N 1.31512 * 120.00295 * 0.28128 * 7 5 4 9 9 Si 1.86796 * 119.99748 * 180.27633 * 7 5 4 10 10 H 1.48510 * 109.47181 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47284 * 119.99980 * 9 7 5 12 12 H 1.48503 * 109.47227 * 240.00173 * 9 7 5 13 13 N 1.46904 * 109.47322 * 119.99750 * 2 1 3 14 14 C 1.40075 * 111.00141 * 288.02181 * 13 2 1 15 15 C 1.54515 * 111.51224 * 188.14270 * 14 13 2 16 16 C 1.50746 * 108.94481 * 283.99035 * 15 14 13 17 17 N 1.48065 * 112.93277 * 92.64732 * 16 15 14 18 18 C 1.46901 * 110.99753 * 192.21702 * 17 16 15 19 19 C 1.52997 * 109.47424 * 293.95413 * 18 17 16 20 20 F 1.39909 * 109.46842 * 60.00109 * 19 18 17 21 21 F 1.39899 * 109.47423 * 179.97438 * 19 18 17 22 22 F 1.39895 * 109.47054 * 300.00416 * 19 18 17 23 23 C 1.47748 * 113.79087 * 318.28267 * 17 16 15 24 24 C 1.47692 * 110.99510 * 56.66228 * 13 2 1 25 25 H 1.08998 * 109.47517 * 184.65179 * 1 2 3 26 26 H 1.09000 * 109.47213 * 304.65584 * 1 2 3 27 27 H 1.09006 * 109.47013 * 64.65268 * 1 2 3 28 28 H 1.09003 * 109.46917 * 56.86389 * 4 2 1 29 29 H 1.08998 * 109.46958 * 296.86321 * 4 2 1 30 30 H 0.97002 * 120.00272 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.07310 * 308.67022 * 14 13 2 32 32 H 1.09004 * 109.07492 * 67.62284 * 14 13 2 33 33 H 1.09004 * 109.55621 * 43.82968 * 15 14 13 34 34 H 1.08996 * 109.56006 * 164.04129 * 15 14 13 35 35 H 1.08992 * 108.78798 * 213.53854 * 16 15 14 36 36 H 1.08998 * 108.78573 * 331.87214 * 16 15 14 37 37 H 1.09005 * 109.47382 * 53.95698 * 18 17 16 38 38 H 1.09000 * 109.47064 * 173.95327 * 18 17 16 39 39 H 1.08999 * 108.99224 * 79.50472 * 23 17 16 40 40 H 1.08999 * 108.99008 * 198.25163 * 23 17 16 41 41 H 1.09001 * 109.73141 * 271.64066 * 24 13 2 42 42 H 1.09000 * 109.74163 * 32.33826 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5451 -0.6542 -1.2886 6 1 4.0796 -0.0798 -0.5467 7 6 4.2397 -1.3309 -2.2688 8 7 3.5888 -2.0303 -3.1724 9 14 6.1056 -1.2541 -2.3131 10 1 6.5930 -0.4075 -1.1945 11 1 6.6609 -2.6244 -2.1745 12 1 6.5464 -0.6697 -3.6052 13 7 2.0197 -0.6925 1.1995 14 6 1.8056 0.0805 2.3479 15 6 2.4932 -0.5400 3.5847 16 6 1.6817 -1.7200 4.0554 17 7 2.1342 -3.0021 3.4691 18 6 1.1553 -4.0690 3.7173 19 6 1.0866 -4.3591 5.2179 20 9 0.6970 -3.2010 5.8994 21 9 0.1540 -5.3748 5.4544 22 9 2.3455 -4.7663 5.6722 23 6 2.4698 -2.9151 2.0328 24 6 1.4816 -2.0658 1.2744 25 1 -0.3634 -1.0242 0.0833 26 1 -0.3633 0.5844 0.8453 27 1 -0.3633 0.4400 -0.9288 28 1 1.6316 -0.2409 -2.1384 29 1 1.7234 -1.7639 -1.2215 30 1 4.0775 -2.5066 -3.8617 31 1 2.2046 1.0813 2.1832 32 1 0.7340 0.1519 2.5346 33 1 3.4967 -0.8708 3.3168 34 1 2.5541 0.2033 4.3796 35 1 1.7541 -1.7853 5.1409 36 1 0.6386 -1.5598 3.7826 37 1 0.1744 -3.7517 3.3633 38 1 1.4588 -4.9712 3.1863 39 1 3.4646 -2.4823 1.9266 40 1 2.4742 -3.9190 1.6082 41 1 0.5252 -2.0584 1.7971 42 1 1.3491 -2.4647 0.2687 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351617482.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:35 Heat of formation + Delta-G solvation = -137.451668 kcal Electronic energy + Delta-G solvation = -25687.276288 eV Core-core repulsion = 21673.565846 eV Total energy + Delta-G solvation = -4013.710442 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.15514 -47.73442 -47.55580 -39.72302 -36.70024 -33.50035 -32.27201 -30.99954 -29.67605 -27.37426 -26.25317 -25.36500 -23.26491 -23.03798 -21.06297 -20.06458 -18.93050 -18.65000 -18.48937 -17.42325 -16.22467 -16.18735 -15.58262 -14.86829 -14.74446 -14.58398 -14.46472 -14.24603 -14.18717 -14.01942 -13.78513 -13.72170 -13.26170 -13.18723 -12.79458 -12.22036 -12.11799 -11.93348 -11.81506 -11.72941 -11.45117 -11.23741 -11.11311 -10.93292 -10.69800 -10.49654 -10.43770 -10.18879 -9.88403 -9.21914 -8.99246 -8.39107 -8.27896 -7.42354 -5.92035 -3.89636 2.66079 3.36485 3.44688 3.49193 3.49803 3.77588 3.98507 4.36358 4.48280 4.55029 4.92234 5.01610 5.09492 5.13580 5.38308 5.45286 5.54089 5.56622 5.61768 5.72520 5.78958 5.87012 5.90726 6.00195 6.11044 6.18424 6.20636 6.39484 6.50440 6.57637 6.64171 6.91010 6.95880 7.01536 7.49655 7.69643 7.91889 8.08677 8.14676 8.54376 9.16163 9.72423 11.19877 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.019093 B = 0.004451 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.190680 B = 6288.775197 C = 6829.018568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.091 3.909 3 H 0.068 0.932 4 C 0.028 3.972 5 C -0.487 4.487 6 H 0.060 0.940 7 C 0.052 3.948 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.526 5.526 14 C 0.074 3.926 15 C -0.122 4.122 16 C 0.046 3.954 17 N -0.541 5.541 18 C 0.011 3.989 19 C 0.456 3.544 20 F -0.184 7.184 21 F -0.188 7.188 22 F -0.174 7.174 23 C 0.064 3.936 24 C 0.040 3.960 25 H 0.048 0.952 26 H 0.038 0.962 27 H 0.056 0.944 28 H 0.015 0.985 29 H 0.023 0.977 30 H 0.257 0.743 31 H 0.068 0.932 32 H 0.008 0.992 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.033 0.967 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.023 0.977 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.085 -2.397 15.185 16.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.016 4.016 3 H 0.087 0.913 4 C -0.009 4.009 5 C -0.525 4.525 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.215 1.215 13 N -0.249 5.249 14 C -0.056 4.056 15 C -0.160 4.160 16 C -0.080 4.080 17 N -0.267 5.267 18 C -0.119 4.119 19 C 0.401 3.599 20 F -0.166 7.166 21 F -0.170 7.170 22 F -0.156 7.156 23 C -0.063 4.063 24 C -0.088 4.088 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.033 0.967 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.026 0.974 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.137 0.863 39 H 0.123 0.877 40 H 0.091 0.909 41 H 0.041 0.959 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.151 -2.649 15.276 16.680 hybrid contribution -0.658 0.197 -0.191 0.713 sum -6.809 -2.452 15.085 16.731 Atomic orbital electron populations 1.22512 0.99773 1.00914 1.00833 1.21889 0.89893 0.98140 0.91721 0.91338 1.19251 0.96515 0.95367 0.89718 1.21157 0.91381 1.28929 1.11058 0.92182 1.24980 0.97961 0.95861 0.95952 1.69965 1.35059 1.33090 1.16406 0.86602 0.86531 0.77622 0.77610 1.19774 1.21300 1.21480 1.58991 1.61739 1.01827 1.02313 1.21055 0.96507 0.97296 0.90768 1.21593 1.01231 0.96050 0.97116 1.22288 0.97307 0.88392 1.00054 1.62110 1.40831 1.05313 1.18419 1.23248 0.99091 1.00167 0.89381 1.20643 0.73492 0.73751 0.91992 1.93116 1.91050 1.49352 1.83061 1.93172 1.66656 1.61426 1.95715 1.93197 1.41033 1.90427 1.90893 1.22108 1.01618 1.00078 0.82449 1.22310 0.94493 0.90177 1.01826 0.93249 0.94320 0.92452 0.96730 0.95907 0.93379 0.91401 0.97407 0.89454 0.91046 0.89887 0.94832 0.90640 0.86304 0.87723 0.90851 0.95936 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 8.69 37.16 0.32 -2.65 16 2 C 0.09 1.74 2.23 -67.71 -0.15 1.59 16 3 H 0.07 1.35 7.81 -51.93 -0.41 0.95 16 4 C 0.03 0.68 4.34 -27.88 -0.12 0.56 16 5 C -0.49 -13.01 8.79 -34.44 -0.30 -13.32 16 6 H 0.06 1.62 7.75 -52.49 -0.41 1.21 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 9 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 N -0.53 -9.21 3.59 -231.69 -0.83 -10.04 16 14 C 0.07 1.10 4.68 -6.56 -0.03 1.07 16 15 C -0.12 -1.61 5.68 -27.07 -0.15 -1.76 16 16 C 0.05 0.59 4.02 -4.31 -0.02 0.57 16 17 N -0.54 -7.04 4.66 -235.69 -1.10 -8.14 16 18 C 0.01 0.12 4.96 -3.82 -0.02 0.11 16 19 C 0.46 5.16 3.24 37.16 0.12 5.28 16 20 F -0.18 -2.19 14.05 2.25 0.03 -2.16 16 21 F -0.19 -2.10 17.32 2.25 0.04 -2.06 16 22 F -0.17 -2.21 17.24 2.25 0.04 -2.17 16 23 C 0.06 0.95 5.25 -4.48 -0.02 0.92 16 24 C 0.04 0.65 3.73 -4.51 -0.02 0.63 16 25 H 0.05 0.80 6.69 -51.93 -0.35 0.45 16 26 H 0.04 0.57 7.09 -51.93 -0.37 0.20 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.02 0.58 6.01 -51.93 -0.31 0.27 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.07 1.02 7.81 -51.93 -0.41 0.61 16 32 H 0.01 0.12 6.43 -51.93 -0.33 -0.21 16 33 H 0.09 1.30 7.19 -51.93 -0.37 0.93 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.02 5.88 -51.93 -0.31 0.72 16 36 H 0.03 0.43 6.28 -51.93 -0.33 0.11 16 37 H 0.08 0.76 7.73 -51.93 -0.40 0.36 16 38 H 0.12 1.12 7.70 -51.93 -0.40 0.72 16 39 H 0.10 1.81 7.20 -51.93 -0.37 1.44 16 40 H 0.07 1.02 7.58 -51.93 -0.39 0.62 16 41 H 0.02 0.34 6.15 -51.93 -0.32 0.02 16 42 H 0.10 1.78 5.52 -51.93 -0.29 1.49 16 LS Contribution 325.61 15.07 4.91 4.91 Total: -1.00 -28.33 325.61 -7.85 -36.18 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -6.16 Total: -1.71 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -0.49 Total: -5.66 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: -1.19 Total: -43.83 kcal Atomic # 9 Polarization: -6.49 SS G_CDS: 0.11 Total: -6.38 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.33 -7.85 -36.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351617482.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.270 kcal (2) G-P(sol) polarization free energy of solvation -28.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds