Wall clock time and date at job start Tue Mar 31 2020 07:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47646 * 2 1 4 4 C 1.53003 * 109.47549 * 239.99945 * 2 1 3 5 5 C 1.50700 * 109.47135 * 176.86065 * 4 2 1 6 6 H 1.07994 * 120.00304 * 354.99000 * 5 4 2 7 7 C 1.37880 * 119.99386 * 174.71381 * 5 4 2 8 8 N 1.31512 * 120.00295 * 0.28128 * 7 5 4 9 9 Si 1.86796 * 119.99748 * 180.27633 * 7 5 4 10 10 H 1.48510 * 109.47181 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47284 * 119.99980 * 9 7 5 12 12 H 1.48503 * 109.47227 * 240.00173 * 9 7 5 13 13 N 1.46904 * 109.47322 * 119.99750 * 2 1 3 14 14 C 1.40075 * 111.00141 * 288.02181 * 13 2 1 15 15 C 1.54515 * 111.51224 * 188.14270 * 14 13 2 16 16 C 1.50746 * 108.94481 * 283.99035 * 15 14 13 17 17 N 1.48065 * 112.93277 * 92.64732 * 16 15 14 18 18 C 1.46901 * 110.99753 * 192.21702 * 17 16 15 19 19 C 1.52997 * 109.47424 * 293.95413 * 18 17 16 20 20 F 1.39909 * 109.46842 * 60.00109 * 19 18 17 21 21 F 1.39899 * 109.47423 * 179.97438 * 19 18 17 22 22 F 1.39895 * 109.47054 * 300.00416 * 19 18 17 23 23 C 1.47748 * 113.79087 * 318.28267 * 17 16 15 24 24 C 1.47692 * 110.99510 * 56.66228 * 13 2 1 25 25 H 1.08998 * 109.47517 * 184.65179 * 1 2 3 26 26 H 1.09000 * 109.47213 * 304.65584 * 1 2 3 27 27 H 1.09006 * 109.47013 * 64.65268 * 1 2 3 28 28 H 1.09003 * 109.46917 * 56.86389 * 4 2 1 29 29 H 1.08998 * 109.46958 * 296.86321 * 4 2 1 30 30 H 0.97002 * 120.00272 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.07310 * 308.67022 * 14 13 2 32 32 H 1.09004 * 109.07492 * 67.62284 * 14 13 2 33 33 H 1.09004 * 109.55621 * 43.82968 * 15 14 13 34 34 H 1.08996 * 109.56006 * 164.04129 * 15 14 13 35 35 H 1.08992 * 108.78798 * 213.53854 * 16 15 14 36 36 H 1.08998 * 108.78573 * 331.87214 * 16 15 14 37 37 H 1.09005 * 109.47382 * 53.95698 * 18 17 16 38 38 H 1.09000 * 109.47064 * 173.95327 * 18 17 16 39 39 H 1.08999 * 108.99224 * 79.50472 * 23 17 16 40 40 H 1.08999 * 108.99008 * 198.25163 * 23 17 16 41 41 H 1.09001 * 109.73141 * 271.64066 * 24 13 2 42 42 H 1.09000 * 109.74163 * 32.33826 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5451 -0.6542 -1.2886 6 1 4.0796 -0.0798 -0.5467 7 6 4.2397 -1.3309 -2.2688 8 7 3.5888 -2.0303 -3.1724 9 14 6.1056 -1.2541 -2.3131 10 1 6.5930 -0.4075 -1.1945 11 1 6.6609 -2.6244 -2.1745 12 1 6.5464 -0.6697 -3.6052 13 7 2.0197 -0.6925 1.1995 14 6 1.8056 0.0805 2.3479 15 6 2.4932 -0.5400 3.5847 16 6 1.6817 -1.7200 4.0554 17 7 2.1342 -3.0021 3.4691 18 6 1.1553 -4.0690 3.7173 19 6 1.0866 -4.3591 5.2179 20 9 0.6970 -3.2010 5.8994 21 9 0.1540 -5.3748 5.4544 22 9 2.3455 -4.7663 5.6722 23 6 2.4698 -2.9151 2.0328 24 6 1.4816 -2.0658 1.2744 25 1 -0.3634 -1.0242 0.0833 26 1 -0.3633 0.5844 0.8453 27 1 -0.3633 0.4400 -0.9288 28 1 1.6316 -0.2409 -2.1384 29 1 1.7234 -1.7639 -1.2215 30 1 4.0775 -2.5066 -3.8617 31 1 2.2046 1.0813 2.1832 32 1 0.7340 0.1519 2.5346 33 1 3.4967 -0.8708 3.3168 34 1 2.5541 0.2033 4.3796 35 1 1.7541 -1.7853 5.1409 36 1 0.6386 -1.5598 3.7826 37 1 0.1744 -3.7517 3.3633 38 1 1.4588 -4.9712 3.1863 39 1 3.4646 -2.4823 1.9266 40 1 2.4742 -3.9190 1.6082 41 1 0.5252 -2.0584 1.7971 42 1 1.3491 -2.4647 0.2687 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351617482.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:34 Heat of formation + Delta-G solvation = -154.902672 kcal Electronic energy + Delta-G solvation = -25688.033021 eV Core-core repulsion = 21673.565846 eV Total energy + Delta-G solvation = -4014.467174 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.06253 -48.62964 -48.48769 -40.97067 -37.94933 -35.15734 -33.86694 -32.30445 -30.89545 -29.14706 -27.38468 -26.55782 -25.07679 -24.05793 -22.45103 -21.19716 -20.32333 -19.56508 -19.41793 -18.39363 -18.28753 -17.46477 -16.72447 -16.52549 -15.94538 -15.83669 -15.52041 -15.41880 -15.19271 -14.97382 -14.72993 -14.72171 -14.67244 -14.40940 -14.07853 -13.73351 -13.57548 -13.27464 -13.10562 -13.03921 -12.97848 -12.59435 -12.51291 -12.37613 -12.28624 -12.08583 -11.95269 -11.55932 -11.28674 -11.04520 -10.92420 -10.43246 -9.44654 -8.75270 -8.06118 -6.09391 1.43122 1.45871 1.57302 1.75401 2.50593 2.51390 2.88779 3.10181 3.13838 3.31252 3.45669 3.89658 3.99850 4.02217 4.18119 4.25604 4.28830 4.34106 4.45988 4.52804 4.55218 4.57384 4.65832 4.79255 4.86221 5.00202 5.03355 5.09037 5.19351 5.24145 5.37687 5.38371 5.55225 5.75477 5.89234 5.90257 5.95420 6.36784 6.53680 6.82730 7.04122 7.56312 9.05865 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.019093 B = 0.004451 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.190680 B = 6288.775197 C = 6829.018568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.099 3.901 3 H 0.062 0.938 4 C 0.035 3.965 5 C -0.490 4.490 6 H 0.055 0.945 7 C 0.001 3.999 8 N -0.939 5.939 9 Si 0.949 3.051 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.542 5.542 14 C 0.073 3.927 15 C -0.115 4.115 16 C 0.049 3.951 17 N -0.546 5.546 18 C 0.011 3.989 19 C 0.460 3.540 20 F -0.186 7.186 21 F -0.186 7.186 22 F -0.183 7.183 23 C 0.075 3.925 24 C 0.049 3.951 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.055 0.945 28 H -0.013 1.013 29 H 0.006 0.994 30 H 0.257 0.743 31 H 0.066 0.934 32 H 0.019 0.981 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.037 0.963 37 H 0.089 0.911 38 H 0.133 0.867 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.039 0.961 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.375 -2.257 16.868 18.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.009 4.009 3 H 0.080 0.920 4 C -0.002 4.002 5 C -0.528 4.528 6 H 0.074 0.926 7 C -0.195 4.195 8 N -0.582 5.582 9 Si 0.776 3.224 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.213 1.213 13 N -0.266 5.266 14 C -0.056 4.056 15 C -0.153 4.153 16 C -0.078 4.078 17 N -0.272 5.272 18 C -0.119 4.119 19 C 0.406 3.594 20 F -0.168 7.168 21 F -0.167 7.167 22 F -0.165 7.165 23 C -0.052 4.052 24 C -0.079 4.079 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.006 0.994 29 H 0.024 0.976 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.037 0.963 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.055 0.945 37 H 0.107 0.893 38 H 0.151 0.849 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.057 0.943 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.446 -2.502 16.985 18.338 hybrid contribution -0.594 0.157 -0.689 0.923 sum -7.040 -2.345 16.296 17.906 Atomic orbital electron populations 1.22366 0.97369 1.01431 1.01773 1.21589 0.91764 0.96990 0.90542 0.91979 1.19112 0.95207 0.94675 0.91240 1.21437 0.92874 1.28082 1.10431 0.92639 1.25723 1.02221 0.95793 0.95809 1.70081 1.36686 1.34200 1.17202 0.85630 0.81490 0.77637 0.77627 1.19113 1.20999 1.21262 1.58912 1.62488 1.02520 1.02632 1.21103 0.97316 0.96923 0.90262 1.21552 0.99924 0.96858 0.96930 1.22297 0.97182 0.87947 1.00363 1.62026 1.42159 1.06116 1.16860 1.23336 0.99238 1.00049 0.89229 1.20628 0.73133 0.73650 0.92009 1.93110 1.91029 1.49492 1.83173 1.93178 1.66511 1.61338 1.95705 1.93184 1.41706 1.90531 1.91034 1.21864 0.99789 0.99922 0.83666 1.22197 0.95628 0.89552 1.00544 0.93127 0.92024 0.92607 0.99438 0.97628 0.93402 0.91600 0.96320 0.91385 0.88706 0.89102 0.94519 0.89284 0.84879 0.90428 0.90090 0.94274 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.37 8.69 71.98 0.63 -4.75 16 2 C 0.10 3.78 2.23 44.91 0.10 3.88 16 3 H 0.06 2.43 7.81 -2.39 -0.02 2.42 16 4 C 0.03 1.71 4.34 29.85 0.13 1.84 16 5 C -0.49 -26.61 8.79 25.60 0.22 -26.38 16 6 H 0.06 3.01 7.75 -2.91 -0.02 2.99 16 7 C 0.00 0.03 5.46 84.66 0.46 0.49 16 8 N -0.94 -55.86 13.29 21.45 0.28 -55.57 16 9 Si 0.95 44.49 29.54 68.60 2.03 46.52 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 13 N -0.54 -18.62 3.59 -886.92 -3.18 -21.80 16 14 C 0.07 2.05 4.68 88.05 0.41 2.46 16 15 C -0.11 -2.79 5.68 30.38 0.17 -2.62 16 16 C 0.05 1.11 4.02 85.35 0.34 1.45 16 17 N -0.55 -13.19 4.66 -899.60 -4.19 -17.38 16 18 C 0.01 0.22 4.96 86.30 0.43 0.65 16 19 C 0.46 9.38 3.24 71.98 0.23 9.61 16 20 F -0.19 -3.97 14.05 44.97 0.63 -3.33 16 21 F -0.19 -3.73 17.32 44.97 0.78 -2.95 16 22 F -0.18 -4.31 17.24 44.97 0.78 -3.54 16 23 C 0.07 2.16 5.25 85.42 0.45 2.61 16 24 C 0.05 1.55 3.73 85.43 0.32 1.87 16 25 H 0.05 1.57 6.69 -2.39 -0.02 1.56 16 26 H 0.06 1.67 7.09 -2.39 -0.02 1.65 16 27 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 28 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 29 H 0.01 0.29 6.01 -2.39 -0.01 0.28 16 30 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.07 1.86 7.81 -2.39 -0.02 1.84 16 32 H 0.02 0.50 6.43 -2.39 -0.02 0.48 16 33 H 0.07 1.96 7.19 -2.38 -0.02 1.94 16 34 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.09 1.98 5.88 -2.39 -0.01 1.97 16 36 H 0.04 0.83 6.28 -2.39 -0.01 0.81 16 37 H 0.09 1.52 7.73 -2.38 -0.02 1.50 16 38 H 0.13 2.19 7.70 -2.39 -0.02 2.17 16 39 H 0.08 2.69 7.20 -2.39 -0.02 2.68 16 40 H 0.08 2.19 7.58 -2.39 -0.02 2.17 16 41 H 0.04 1.10 6.15 -2.39 -0.01 1.08 16 42 H 0.07 2.54 5.52 -2.39 -0.01 2.52 16 Total: -1.00 -60.61 325.61 2.05 -58.56 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 1.02 Total: 8.38 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 3.90 Total: -8.89 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -7.09 Total: -94.75 kcal Atomic # 9 Polarization: -12.01 SS G_CDS: 2.19 Total: -9.82 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -60.61 2.05 -58.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351617482.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.345 kcal (2) G-P(sol) polarization free energy of solvation -60.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds