Wall clock time and date at job start Tue Mar 31 2020 07:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46369 * 2 1 4 4 C 1.53000 * 109.47315 * 120.00160 * 2 1 3 5 5 C 1.50700 * 109.46853 * 183.21261 * 4 2 1 6 6 H 1.07996 * 120.00129 * 5.21613 * 5 4 2 7 7 C 1.37877 * 119.99450 * 185.21413 * 5 4 2 8 8 N 1.31512 * 120.00360 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99763 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46784 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47015 * 119.99765 * 9 7 5 12 12 H 1.48504 * 109.46858 * 239.99946 * 9 7 5 13 13 N 1.46898 * 109.46981 * 240.00317 * 2 1 3 14 14 C 1.44254 * 111.00037 * 303.97159 * 13 2 1 15 15 C 1.54257 * 108.63784 * 219.84754 * 14 13 2 16 16 C 1.46137 * 111.90574 * 281.37786 * 15 14 13 17 17 N 1.48101 * 112.11676 * 60.91233 * 16 15 14 18 18 C 1.46903 * 110.99748 * 156.44461 * 17 16 15 19 19 C 1.52991 * 109.47294 * 66.04574 * 18 17 16 20 20 F 1.39906 * 109.47241 * 59.99703 * 19 18 17 21 21 F 1.39903 * 109.47673 * 179.97438 * 19 18 17 22 22 F 1.39899 * 109.47155 * 299.99934 * 19 18 17 23 23 C 1.44327 * 109.94496 * 279.59204 * 17 16 15 24 24 C 1.48196 * 111.00076 * 72.20936 * 13 2 1 25 25 H 1.09004 * 109.47068 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47043 * 299.99470 * 1 2 3 27 27 H 1.08998 * 109.47390 * 60.00173 * 1 2 3 28 28 H 1.08999 * 109.47060 * 303.21468 * 4 2 1 29 29 H 1.09004 * 109.46915 * 63.20783 * 4 2 1 30 30 H 0.96999 * 119.99834 * 180.02562 * 8 7 5 31 31 H 1.08996 * 109.61099 * 100.09962 * 14 13 2 32 32 H 1.08996 * 109.60641 * 339.59440 * 14 13 2 33 33 H 1.09009 * 108.99032 * 160.75495 * 15 14 13 34 34 H 1.09002 * 108.93184 * 41.96111 * 15 14 13 35 35 H 1.08995 * 108.93383 * 181.56444 * 16 15 14 36 36 H 1.08995 * 108.93673 * 300.26018 * 16 15 14 37 37 H 1.09004 * 109.46817 * 186.04557 * 18 17 16 38 38 H 1.09001 * 109.47263 * 306.04308 * 18 17 16 39 39 H 1.09006 * 108.90828 * 333.24155 * 23 17 16 40 40 H 1.08997 * 108.82852 * 214.73080 * 23 17 16 41 41 H 1.09005 * 108.82004 * 312.53145 * 24 13 2 42 42 H 1.08997 * 108.82895 * 70.93816 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5450 -0.6526 1.2896 6 1 4.0792 -0.0746 0.5501 7 6 4.2397 -1.3278 2.2706 8 7 3.5891 -2.0312 3.1714 9 14 6.1051 -1.2422 2.3212 10 1 6.5919 -0.3913 1.2057 11 1 6.5389 -0.6581 3.6157 12 1 6.6673 -2.6096 2.1819 13 7 2.0197 -0.6924 -1.1995 14 6 1.4825 -2.0288 -1.2804 15 6 2.5923 -2.9768 -1.7796 16 6 2.7824 -2.8801 -3.2253 17 7 3.1860 -1.5183 -3.6448 18 6 3.8939 -1.5520 -4.9316 19 6 2.9307 -2.0014 -6.0320 20 9 1.8614 -1.1026 -6.1113 21 9 3.6046 -2.0329 -7.2576 22 9 2.4449 -3.2789 -5.7334 23 6 2.0270 -0.6612 -3.7156 24 6 1.7981 0.1277 -2.4138 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6305 -0.2418 2.1383 29 1 1.7245 -1.7642 1.2209 30 1 4.0779 -2.5059 3.8618 31 1 0.6459 -2.0451 -1.9789 32 1 1.1451 -2.3477 -0.2943 33 1 2.3240 -4.0022 -1.5248 34 1 3.5270 -2.7205 -1.2809 35 1 3.5546 -3.5871 -3.5285 36 1 1.8487 -3.1415 -3.7231 37 1 4.2724 -0.5566 -5.1642 38 1 4.7270 -2.2522 -4.8697 39 1 1.1472 -1.2726 -3.9165 40 1 2.1604 0.0438 -4.5361 41 1 0.7740 0.5008 -2.4041 42 1 2.4813 0.9768 -2.3943 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351617483.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:37 Heat of formation + Delta-G solvation = -130.745731 kcal Electronic energy + Delta-G solvation = -25994.931117 eV Core-core repulsion = 21981.511467 eV Total energy + Delta-G solvation = -4013.419651 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.32767 -47.82451 -47.77179 -39.35991 -36.84410 -33.08445 -32.57851 -31.24627 -29.18071 -27.26522 -26.03588 -25.52199 -23.34783 -22.96302 -20.76025 -20.64496 -18.74957 -18.69187 -18.37870 -17.26333 -16.23284 -16.07429 -15.65118 -14.95982 -14.81843 -14.74686 -14.32040 -14.19323 -14.18995 -14.01859 -13.95859 -13.60151 -13.27772 -12.98598 -12.58687 -12.33844 -12.28890 -12.08280 -11.72199 -11.48561 -11.43253 -11.15755 -10.81270 -10.69949 -10.55635 -10.37921 -10.23644 -10.10614 -9.82776 -9.09372 -8.89002 -8.45411 -8.19798 -7.19205 -5.83011 -3.79310 2.63344 3.41693 3.47304 3.49358 3.55665 3.68249 3.87385 4.14725 4.57811 4.62494 4.87632 4.98222 5.19712 5.26423 5.41388 5.50335 5.54367 5.64495 5.71929 5.75267 5.90430 5.91911 6.02366 6.10366 6.16158 6.24826 6.34966 6.52441 6.66048 6.71502 6.86389 6.93933 7.06706 7.15574 7.63261 7.79237 8.12655 8.15617 8.22260 8.65423 9.26706 9.81730 11.29164 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.019471 B = 0.004844 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.713101 B = 5778.554231 C = 6513.420486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.090 3.910 3 H 0.066 0.934 4 C 0.029 3.971 5 C -0.479 4.479 6 H 0.061 0.939 7 C 0.050 3.950 8 N -0.906 5.906 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.288 1.288 13 N -0.513 5.513 14 C 0.075 3.925 15 C -0.119 4.119 16 C 0.057 3.943 17 N -0.494 5.494 18 C 0.019 3.981 19 C 0.408 3.592 20 F -0.185 7.185 21 F -0.190 7.190 22 F -0.184 7.184 23 C 0.042 3.958 24 C 0.070 3.930 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.038 0.962 28 H 0.013 0.987 29 H 0.023 0.977 30 H 0.255 0.745 31 H 0.015 0.985 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.039 0.961 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.041 0.959 40 H 0.080 0.920 41 H 0.029 0.971 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.287 0.199 -17.786 18.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.018 4.018 3 H 0.085 0.915 4 C -0.008 4.008 5 C -0.518 4.518 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.547 5.547 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.215 1.215 13 N -0.236 5.236 14 C -0.054 4.054 15 C -0.157 4.157 16 C -0.069 4.069 17 N -0.215 5.215 18 C -0.113 4.113 19 C 0.351 3.649 20 F -0.167 7.167 21 F -0.172 7.172 22 F -0.166 7.166 23 C -0.087 4.087 24 C -0.058 4.058 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.031 0.969 29 H 0.042 0.958 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.059 0.941 40 H 0.099 0.901 41 H 0.047 0.953 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.479 0.228 -17.244 17.423 hybrid contribution -0.563 -0.377 -0.844 1.083 sum -3.042 -0.149 -18.088 18.342 Atomic orbital electron populations 1.22560 1.00097 1.01142 1.00482 1.21898 0.89611 0.98336 0.91951 0.91548 1.19247 0.96515 0.95433 0.89628 1.21169 0.91417 1.28432 1.10792 0.92091 1.24974 0.97792 0.96025 0.96084 1.69973 1.34910 1.33284 1.16579 0.86610 0.86814 0.77508 0.77484 1.19759 1.21624 1.21462 1.60461 1.61124 1.01199 1.00830 1.21668 0.93698 0.89647 1.00391 1.20609 1.02623 0.98400 0.94080 1.21448 0.99322 0.87727 0.98433 1.61716 1.26406 1.11243 1.22141 1.23933 0.96035 1.06102 0.85190 1.22664 0.82452 0.75339 0.84459 1.93150 1.59389 1.67672 1.96473 1.93171 1.79871 1.96295 1.47865 1.93177 1.89303 1.41263 1.92831 1.22418 0.90997 0.96623 0.98631 1.22405 0.98320 0.96042 0.89049 0.93126 0.92675 0.94300 0.96866 0.95842 0.93531 0.96648 0.90161 0.91966 0.88789 0.91281 0.94265 0.86170 0.86152 0.94063 0.90144 0.95307 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 8.73 37.16 0.32 -2.80 16 2 C 0.09 1.79 2.24 -67.71 -0.15 1.64 16 3 H 0.07 1.36 8.05 -51.93 -0.42 0.94 16 4 C 0.03 0.71 4.32 -27.88 -0.12 0.59 16 5 C -0.48 -13.18 8.79 -34.44 -0.30 -13.48 16 6 H 0.06 1.70 7.75 -52.49 -0.41 1.29 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.91 -27.04 13.29 55.43 0.74 -26.30 16 9 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 N -0.51 -9.45 3.75 -226.29 -0.85 -10.30 16 14 C 0.07 1.31 3.93 -4.58 -0.02 1.29 16 15 C -0.12 -1.95 5.66 -29.33 -0.17 -2.12 16 16 C 0.06 0.78 3.59 -6.42 -0.02 0.75 16 17 N -0.49 -6.58 4.62 -239.18 -1.11 -7.68 16 18 C 0.02 0.19 5.41 -3.83 -0.02 0.17 16 19 C 0.41 4.36 3.09 37.15 0.11 4.47 16 20 F -0.19 -2.13 13.68 2.25 0.03 -2.10 16 21 F -0.19 -2.04 17.32 2.25 0.04 -2.00 16 22 F -0.18 -2.19 14.27 2.25 0.03 -2.16 16 23 C 0.04 0.55 3.51 -4.71 -0.02 0.53 16 24 C 0.07 1.07 5.63 -2.62 -0.01 1.05 16 25 H 0.05 0.86 6.67 -51.93 -0.35 0.51 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.59 6.58 -51.93 -0.34 0.25 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.02 0.62 6.17 -51.93 -0.32 0.30 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.02 0.25 6.96 -51.93 -0.36 -0.11 16 32 H 0.08 1.58 4.94 -51.93 -0.26 1.32 16 33 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.09 1.87 8.12 -51.93 -0.42 1.44 16 35 H 0.07 0.85 7.60 -51.93 -0.39 0.46 16 36 H 0.04 0.53 5.97 -51.93 -0.31 0.22 16 37 H 0.12 1.01 8.11 -51.93 -0.42 0.58 16 38 H 0.12 1.03 7.91 -51.93 -0.41 0.62 16 39 H 0.04 0.56 6.14 -51.93 -0.32 0.24 16 40 H 0.08 0.93 6.03 -51.93 -0.31 0.61 16 41 H 0.03 0.42 6.34 -51.93 -0.33 0.09 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 322.35 15.07 4.86 4.86 Total: -1.00 -29.77 322.35 -7.97 -37.73 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -6.20 Total: -2.43 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -0.49 Total: -6.56 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: -1.22 Total: -44.28 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 0.10 Total: -6.26 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.77 -7.97 -37.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351617483.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.012 kcal (2) G-P(sol) polarization free energy of solvation -29.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds