Wall clock time and date at job start Tue Mar 31 2020 07:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46369 * 2 1 4 4 C 1.53000 * 109.47315 * 120.00160 * 2 1 3 5 5 C 1.50700 * 109.46853 * 183.21261 * 4 2 1 6 6 H 1.07996 * 120.00129 * 5.21613 * 5 4 2 7 7 C 1.37877 * 119.99450 * 185.21413 * 5 4 2 8 8 N 1.31512 * 120.00360 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99763 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46784 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47015 * 119.99765 * 9 7 5 12 12 H 1.48504 * 109.46858 * 239.99946 * 9 7 5 13 13 N 1.46898 * 109.46981 * 240.00317 * 2 1 3 14 14 C 1.44254 * 111.00037 * 303.97159 * 13 2 1 15 15 C 1.54257 * 108.63784 * 219.84754 * 14 13 2 16 16 C 1.46137 * 111.90574 * 281.37786 * 15 14 13 17 17 N 1.48101 * 112.11676 * 60.91233 * 16 15 14 18 18 C 1.46903 * 110.99748 * 156.44461 * 17 16 15 19 19 C 1.52991 * 109.47294 * 66.04574 * 18 17 16 20 20 F 1.39906 * 109.47241 * 59.99703 * 19 18 17 21 21 F 1.39903 * 109.47673 * 179.97438 * 19 18 17 22 22 F 1.39899 * 109.47155 * 299.99934 * 19 18 17 23 23 C 1.44327 * 109.94496 * 279.59204 * 17 16 15 24 24 C 1.48196 * 111.00076 * 72.20936 * 13 2 1 25 25 H 1.09004 * 109.47068 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47043 * 299.99470 * 1 2 3 27 27 H 1.08998 * 109.47390 * 60.00173 * 1 2 3 28 28 H 1.08999 * 109.47060 * 303.21468 * 4 2 1 29 29 H 1.09004 * 109.46915 * 63.20783 * 4 2 1 30 30 H 0.96999 * 119.99834 * 180.02562 * 8 7 5 31 31 H 1.08996 * 109.61099 * 100.09962 * 14 13 2 32 32 H 1.08996 * 109.60641 * 339.59440 * 14 13 2 33 33 H 1.09009 * 108.99032 * 160.75495 * 15 14 13 34 34 H 1.09002 * 108.93184 * 41.96111 * 15 14 13 35 35 H 1.08995 * 108.93383 * 181.56444 * 16 15 14 36 36 H 1.08995 * 108.93673 * 300.26018 * 16 15 14 37 37 H 1.09004 * 109.46817 * 186.04557 * 18 17 16 38 38 H 1.09001 * 109.47263 * 306.04308 * 18 17 16 39 39 H 1.09006 * 108.90828 * 333.24155 * 23 17 16 40 40 H 1.08997 * 108.82852 * 214.73080 * 23 17 16 41 41 H 1.09005 * 108.82004 * 312.53145 * 24 13 2 42 42 H 1.08997 * 108.82895 * 70.93816 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5450 -0.6526 1.2896 6 1 4.0792 -0.0746 0.5501 7 6 4.2397 -1.3278 2.2706 8 7 3.5891 -2.0312 3.1714 9 14 6.1051 -1.2422 2.3212 10 1 6.5919 -0.3913 1.2057 11 1 6.5389 -0.6581 3.6157 12 1 6.6673 -2.6096 2.1819 13 7 2.0197 -0.6924 -1.1995 14 6 1.4825 -2.0288 -1.2804 15 6 2.5923 -2.9768 -1.7796 16 6 2.7824 -2.8801 -3.2253 17 7 3.1860 -1.5183 -3.6448 18 6 3.8939 -1.5520 -4.9316 19 6 2.9307 -2.0014 -6.0320 20 9 1.8614 -1.1026 -6.1113 21 9 3.6046 -2.0329 -7.2576 22 9 2.4449 -3.2789 -5.7334 23 6 2.0270 -0.6612 -3.7156 24 6 1.7981 0.1277 -2.4138 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6305 -0.2418 2.1383 29 1 1.7245 -1.7642 1.2209 30 1 4.0779 -2.5059 3.8618 31 1 0.6459 -2.0451 -1.9789 32 1 1.1451 -2.3477 -0.2943 33 1 2.3240 -4.0022 -1.5248 34 1 3.5270 -2.7205 -1.2809 35 1 3.5546 -3.5871 -3.5285 36 1 1.8487 -3.1415 -3.7231 37 1 4.2724 -0.5566 -5.1642 38 1 4.7270 -2.2522 -4.8697 39 1 1.1472 -1.2726 -3.9165 40 1 2.1604 0.0438 -4.5361 41 1 0.7740 0.5008 -2.4041 42 1 2.4813 0.9768 -2.3943 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351617483.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:36 Heat of formation + Delta-G solvation = -149.990174 kcal Electronic energy + Delta-G solvation = -25995.765619 eV Core-core repulsion = 21981.511467 eV Total energy + Delta-G solvation = -4014.254152 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.16975 -48.67379 -48.61355 -40.59153 -38.15003 -34.92210 -33.98760 -32.71587 -30.33566 -29.12048 -27.20185 -26.76395 -25.03254 -24.12055 -22.21452 -21.74888 -19.97239 -19.56398 -19.48330 -18.31659 -18.13122 -17.41899 -16.88284 -16.42174 -15.97014 -15.87551 -15.67752 -15.25692 -15.18074 -15.03649 -14.83263 -14.68031 -14.56195 -14.36521 -13.91548 -13.68020 -13.55674 -13.34210 -13.23915 -13.11158 -12.82549 -12.62554 -12.44093 -12.33348 -12.08827 -11.92370 -11.68204 -11.52685 -11.39274 -11.00097 -10.87098 -10.40468 -9.46122 -8.60188 -8.02643 -6.05337 1.44160 1.45845 1.58822 1.81803 2.53019 2.53732 2.86329 3.07403 3.18495 3.31113 3.36941 3.95811 4.00869 4.13421 4.21564 4.23873 4.35373 4.45473 4.50809 4.58158 4.61640 4.64084 4.68402 4.79525 4.83629 5.00417 5.05481 5.11296 5.23939 5.28822 5.36046 5.57429 5.59951 5.77955 5.93127 5.98227 6.00401 6.43713 6.67838 6.78126 7.07968 7.59539 9.09571 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.019471 B = 0.004844 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.713101 B = 5778.554231 C = 6513.420486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.098 3.902 3 H 0.061 0.939 4 C 0.036 3.964 5 C -0.482 4.482 6 H 0.055 0.945 7 C -0.003 4.003 8 N -0.942 5.942 9 Si 0.952 3.048 10 H -0.265 1.265 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.530 5.530 14 C 0.080 3.920 15 C -0.111 4.111 16 C 0.062 3.938 17 N -0.514 5.514 18 C 0.023 3.977 19 C 0.412 3.588 20 F -0.190 7.190 21 F -0.189 7.189 22 F -0.192 7.192 23 C 0.048 3.952 24 C 0.069 3.931 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.064 0.936 28 H -0.014 1.014 29 H 0.001 0.999 30 H 0.256 0.744 31 H 0.033 0.967 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.039 0.961 40 H 0.101 0.899 41 H 0.040 0.960 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.744 0.725 -19.998 20.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.010 4.010 3 H 0.079 0.921 4 C -0.002 4.002 5 C -0.521 4.521 6 H 0.074 0.926 7 C -0.199 4.199 8 N -0.585 5.585 9 Si 0.778 3.222 10 H -0.190 1.190 11 H -0.213 1.213 12 H -0.211 1.211 13 N -0.254 5.254 14 C -0.049 4.049 15 C -0.150 4.150 16 C -0.064 4.064 17 N -0.235 5.235 18 C -0.108 4.108 19 C 0.355 3.645 20 F -0.171 7.171 21 F -0.171 7.171 22 F -0.173 7.173 23 C -0.080 4.080 24 C -0.059 4.059 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.004 0.996 29 H 0.019 0.981 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.064 0.936 37 H 0.159 0.841 38 H 0.154 0.846 39 H 0.058 0.942 40 H 0.119 0.881 41 H 0.058 0.942 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.935 0.765 -19.479 19.590 hybrid contribution -0.744 -0.534 -0.166 0.931 sum -2.679 0.231 -19.646 19.829 Atomic orbital electron populations 1.22411 0.97656 1.01356 1.01753 1.21579 0.91526 0.97157 0.90751 0.92050 1.19101 0.95350 0.94442 0.91269 1.21415 0.92792 1.27677 1.10194 0.92625 1.25756 1.02351 0.95881 0.95883 1.70099 1.36663 1.34363 1.17372 0.85592 0.81401 0.77557 0.77608 1.18955 1.21258 1.21143 1.60351 1.61783 1.01738 1.01553 1.21575 0.94602 0.89516 0.99165 1.20532 1.00172 0.98407 0.95890 1.21324 1.00221 0.88647 0.96208 1.61596 1.26641 1.10841 1.24400 1.24039 0.95614 1.07852 0.83287 1.22685 0.82284 0.74924 0.84604 1.93138 1.59716 1.67772 1.96490 1.93175 1.79811 1.96267 1.47859 1.93163 1.89439 1.41855 1.92885 1.22367 0.91035 0.96840 0.97757 1.22493 0.98953 0.95852 0.88570 0.93431 0.92640 0.91728 0.99566 0.98093 0.93538 0.94912 0.93144 0.91361 0.92621 0.89855 0.93601 0.84139 0.84598 0.94231 0.88063 0.94160 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.74 8.73 71.98 0.63 -5.11 16 2 C 0.10 3.93 2.24 44.92 0.10 4.04 16 3 H 0.06 2.50 8.05 -2.39 -0.02 2.48 16 4 C 0.04 1.83 4.32 29.85 0.13 1.96 16 5 C -0.48 -27.07 8.79 25.60 0.23 -26.84 16 6 H 0.06 3.13 7.75 -2.91 -0.02 3.11 16 7 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 8 N -0.94 -57.63 13.29 21.45 0.28 -57.35 16 9 Si 0.95 45.56 29.54 68.60 2.03 47.58 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 12 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 13 N -0.53 -19.30 3.75 -869.83 -3.26 -22.56 16 14 C 0.08 2.80 3.93 87.22 0.34 3.14 16 15 C -0.11 -3.64 5.66 28.91 0.16 -3.48 16 16 C 0.06 1.59 3.59 83.96 0.30 1.89 16 17 N -0.51 -12.43 4.62 -910.64 -4.21 -16.64 16 18 C 0.02 0.38 5.41 86.30 0.47 0.85 16 19 C 0.41 7.61 3.09 71.98 0.22 7.83 16 20 F -0.19 -3.80 13.68 44.97 0.61 -3.18 16 21 F -0.19 -3.54 17.32 44.97 0.78 -2.76 16 22 F -0.19 -4.07 14.27 44.97 0.64 -3.43 16 23 C 0.05 1.14 3.51 87.10 0.31 1.45 16 24 C 0.07 1.97 5.63 86.37 0.49 2.45 16 25 H 0.05 1.60 6.67 -2.38 -0.02 1.58 16 26 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 27 H 0.06 1.81 6.58 -2.39 -0.02 1.80 16 28 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 29 H 0.00 0.05 6.17 -2.39 -0.01 0.03 16 30 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 31 H 0.03 1.02 6.96 -2.39 -0.02 1.00 16 32 H 0.05 2.05 4.94 -2.39 -0.01 2.04 16 33 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.05 2.25 8.12 -2.39 -0.02 2.23 16 35 H 0.08 1.88 7.60 -2.39 -0.02 1.87 16 36 H 0.05 1.13 5.97 -2.39 -0.01 1.12 16 37 H 0.14 1.82 8.11 -2.38 -0.02 1.80 16 38 H 0.14 1.88 7.91 -2.39 -0.02 1.86 16 39 H 0.04 0.96 6.14 -2.38 -0.01 0.95 16 40 H 0.10 1.98 6.03 -2.39 -0.01 1.97 16 41 H 0.04 1.06 6.34 -2.38 -0.02 1.05 16 42 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -64.72 322.35 1.73 -62.98 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.02 Total: 6.92 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 3.83 Total: -11.56 kcal Atomic # 7 Polarization: -89.37 SS G_CDS: -7.19 Total: -96.56 kcal Atomic # 9 Polarization: -11.41 SS G_CDS: 2.04 Total: -9.37 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -64.72 1.73 -62.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351617483.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.005 kcal (2) G-P(sol) polarization free energy of solvation -64.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds