Wall clock time and date at job start Tue Mar 31 2020 07:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34234 * 116.99726 * 2 1 4 4 O 1.20820 * 120.00116 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99843 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.57437 * 60.15774 * 5 3 2 7 7 C 1.53126 * 109.52204 * 299.99965 * 5 3 2 8 8 C 1.53029 * 109.27795 * 182.44080 * 7 5 3 9 9 N 1.46854 * 109.52283 * 59.18140 * 8 7 5 10 10 C 1.46901 * 111.00034 * 174.15832 * 9 8 7 11 11 C 1.53004 * 109.47242 * 293.95897 * 10 9 8 12 12 H 1.08993 * 109.47493 * 54.99279 * 11 10 9 13 13 C 1.47205 * 109.46466 * 294.99683 * 11 10 9 14 14 N 7.83009 * 132.96750 * 54.35004 * 2 1 3 15 15 C 1.52998 * 109.46955 * 174.99994 * 11 10 9 16 16 C 1.50699 * 109.47007 * 184.99482 * 15 11 10 17 17 H 1.08003 * 119.99887 * 359.97438 * 16 15 11 18 18 C 1.37880 * 120.00343 * 180.02562 * 16 15 11 19 19 N 1.31515 * 119.99754 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00265 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.47075 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47245 * 119.99605 * 20 18 16 23 23 H 1.48502 * 109.47198 * 239.99967 * 20 18 16 24 24 C 1.46843 * 111.19690 * 298.25524 * 9 8 7 25 25 C 1.53039 * 109.52391 * 61.74512 * 24 9 8 26 26 H 1.08997 * 109.50468 * 180.87980 * 25 24 9 27 27 C 1.53002 * 109.50513 * 60.75440 * 25 24 9 28 28 H 1.08996 * 109.47168 * 59.99677 * 1 2 3 29 29 H 1.09005 * 109.46670 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46803 * 299.99377 * 1 2 3 31 31 H 1.08994 * 109.50285 * 302.38722 * 7 5 3 32 32 H 1.08998 * 109.50137 * 62.46400 * 7 5 3 33 33 H 1.08999 * 109.46487 * 179.19278 * 8 7 5 34 34 H 1.09003 * 109.46546 * 299.17608 * 8 7 5 35 35 H 1.09008 * 109.47071 * 53.95431 * 10 9 8 36 36 H 1.08997 * 109.47083 * 173.95301 * 10 9 8 37 37 H 1.08993 * 109.47327 * 304.99249 * 15 11 10 38 38 H 1.09004 * 109.47179 * 64.99955 * 15 11 10 39 39 H 0.96996 * 119.99747 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.45906 * 181.75382 * 24 9 8 41 41 H 1.08994 * 109.46526 * 301.73687 * 24 9 8 42 42 H 1.09001 * 109.47199 * 300.20296 * 27 25 24 43 43 H 1.08998 * 109.46435 * 60.19897 * 27 25 24 44 44 H 1.08997 * 109.46964 * 180.19603 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9574 0.7839 -0.8916 7 6 4.1156 0.5809 1.2489 8 6 5.6396 0.7172 1.2739 9 7 6.0051 2.1395 1.2816 10 6 7.4550 2.3096 1.4449 11 6 7.8730 1.8188 2.8325 12 1 7.5377 0.7909 2.9706 13 6 7.2620 2.6766 3.8609 14 7 6.7888 3.3394 4.6558 15 6 9.3967 1.8794 2.9572 16 6 9.8169 1.2822 4.2755 17 1 9.0716 0.8983 4.9565 18 6 11.1526 1.2270 4.6129 19 7 12.0601 1.6949 3.7839 20 14 11.6735 0.4862 6.2466 21 1 10.4706 0.0346 6.9914 22 1 12.5686 -0.6731 6.0016 23 1 12.3952 1.5086 7.0461 24 6 5.5291 2.8165 0.0685 25 6 4.0017 2.7430 0.0076 26 1 3.6498 3.2320 -0.9007 27 6 3.4073 3.4452 1.2301 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.6938 1.0472 2.1393 32 1 3.8444 -0.4746 1.2278 33 1 6.0326 0.2364 2.1697 34 1 6.0616 0.2387 0.3900 35 1 7.9769 1.7311 0.6825 36 1 7.7112 3.3638 1.3399 37 1 9.8507 1.3160 2.1421 38 1 9.7243 2.9178 2.9079 39 1 12.9998 1.6556 4.0210 40 1 5.8418 3.8605 0.0890 41 1 5.9514 2.3280 -0.8095 42 1 3.7613 2.9565 2.1378 43 1 3.7176 4.4901 1.2353 44 1 2.3195 3.3894 1.1879 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355379294.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:03 Heat of formation + Delta-G solvation = -69.618914 kcal Electronic energy + Delta-G solvation = -24111.777631 eV Core-core repulsion = 20642.865378 eV Total energy + Delta-G solvation = -3468.912253 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.10303 -39.22406 -36.99442 -36.29128 -34.36756 -33.27712 -31.84694 -31.33493 -28.54244 -27.09581 -26.84679 -24.79873 -23.18054 -22.34046 -21.65345 -21.17381 -18.86860 -17.77503 -17.02249 -16.83584 -16.52600 -16.41604 -15.59567 -14.84354 -14.76542 -14.44607 -14.34649 -13.89100 -13.79409 -13.57952 -13.04015 -12.86664 -12.66060 -12.40699 -12.32874 -11.96586 -11.81709 -11.63506 -11.52906 -11.38978 -11.20781 -11.16891 -11.06379 -10.90630 -10.74605 -10.66684 -10.52403 -10.49019 -10.14627 -9.98867 -9.53021 -9.20457 -8.46664 -8.17917 -6.10390 -4.13315 1.99190 2.48697 3.27994 3.36473 3.40976 3.73643 3.83896 3.95319 4.31852 4.40884 4.53822 4.60900 4.81511 4.89007 4.90070 4.96667 5.04728 5.17483 5.22100 5.28013 5.30585 5.44040 5.46181 5.52917 5.68985 5.70126 5.79574 5.82253 5.91320 5.99338 6.02242 6.07176 6.19559 6.34255 6.38492 6.50406 6.61373 7.15552 7.18190 7.42053 7.52626 7.55856 7.85237 8.22721 8.61153 8.91818 9.52319 11.00571 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028100 B = 0.003143 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.212860 B = 8907.668569 C = 9116.438309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.466 3.534 4 O -0.500 6.500 5 C -0.076 4.076 6 H 0.105 0.895 7 C -0.109 4.109 8 C 0.052 3.948 9 N -0.540 5.540 10 C 0.063 3.937 11 C 0.010 3.990 12 H 0.100 0.900 13 C 0.256 3.744 14 N -0.480 5.480 15 C 0.031 3.969 16 C -0.525 4.525 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.062 3.938 25 C -0.069 4.069 26 H 0.077 0.923 27 C -0.155 4.155 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.040 0.960 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.026 0.974 39 H 0.262 0.738 40 H 0.081 0.919 41 H 0.036 0.964 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.144 -4.324 -12.700 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.309 3.691 4 O -0.388 6.388 5 C -0.096 4.096 6 H 0.123 0.877 7 C -0.147 4.147 8 C -0.076 4.076 9 N -0.264 5.264 10 C -0.065 4.065 11 C -0.012 4.012 12 H 0.118 0.882 13 C -0.061 4.061 14 N -0.156 5.156 15 C -0.008 4.008 16 C -0.563 4.563 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.210 1.210 24 C -0.066 4.066 25 C -0.088 4.088 26 H 0.096 0.904 27 C -0.212 4.212 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.054 0.946 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.139 -2.786 -11.119 22.309 hybrid contribution 0.807 -0.964 -0.127 1.264 sum -18.332 -3.750 -11.246 21.831 Atomic orbital electron populations 1.23250 0.76585 1.03607 1.02469 1.86527 1.23239 1.33731 1.84083 1.23896 0.92113 0.81140 0.71923 1.90597 1.67264 1.36032 1.44865 1.21241 0.86578 0.99683 1.02052 0.87667 1.21641 0.96080 1.00520 0.96426 1.22162 0.94338 0.89034 1.02076 1.61932 1.14603 1.12425 1.37489 1.22222 0.85877 1.02224 0.96181 1.19255 0.99159 0.95804 0.86935 0.88231 1.28921 0.90968 0.93072 0.93163 1.81071 1.12142 1.11048 1.11382 1.19175 0.84663 0.98635 0.98290 1.21178 0.92209 1.40128 1.02776 0.92457 1.24953 0.96736 0.95297 0.97009 1.69946 1.01074 1.46048 1.35976 0.86546 0.78720 0.78933 0.83948 1.19654 1.20872 1.20984 1.22094 0.93764 0.99882 0.90833 1.21041 0.94956 0.92269 1.00531 0.90441 1.22042 1.01671 0.99970 0.97484 0.92038 0.88178 0.91908 0.90218 0.90214 0.89230 0.94170 0.92742 0.90140 0.94476 0.95579 0.92861 0.90054 0.94581 0.91430 0.93046 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.51 10.49 -39.27 -0.41 -3.92 16 3 C 0.47 5.09 6.96 36.01 0.25 5.34 16 4 O -0.50 -6.59 13.28 -18.75 -0.25 -6.84 16 5 C -0.08 -0.74 2.48 -91.64 -0.23 -0.96 16 6 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 7 C -0.11 -1.08 4.95 -26.65 -0.13 -1.21 16 8 C 0.05 0.56 5.30 -3.83 -0.02 0.54 16 9 N -0.54 -6.73 3.64 -234.67 -0.85 -7.58 16 10 C 0.06 0.89 4.32 -3.82 -0.02 0.88 16 11 C 0.01 0.18 2.14 -93.40 -0.20 -0.01 16 12 H 0.10 1.65 6.23 -51.93 -0.32 1.33 16 13 C 0.26 5.26 13.68 -20.69 -0.28 4.97 16 14 N -0.48 -10.81 18.55 42.23 0.78 -10.02 16 15 C 0.03 0.70 4.42 -27.88 -0.12 0.58 16 16 C -0.52 -13.78 8.60 -34.44 -0.30 -14.07 16 17 H 0.06 1.51 7.59 -52.48 -0.40 1.11 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -25.30 13.29 55.43 0.74 -24.57 16 20 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 24 C 0.06 0.66 4.90 -3.83 -0.02 0.64 16 25 C -0.07 -0.73 2.42 -90.53 -0.22 -0.95 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 C -0.15 -1.94 8.40 37.16 0.31 -1.63 16 28 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 31 H 0.08 0.92 6.58 -51.93 -0.34 0.57 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.03 6.13 -51.93 -0.32 0.71 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.70 8.12 -51.92 -0.42 0.28 16 36 H 0.08 1.16 7.98 -51.93 -0.41 0.74 16 37 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.08 0.88 8.01 -51.93 -0.42 0.47 16 41 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.94 6.01 -51.93 -0.31 0.63 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.96 5.34 -51.93 -0.28 0.68 16 LS Contribution 354.53 15.07 5.34 5.34 Total: -1.00 -31.24 354.53 -6.68 -37.92 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -7.01 Total: -3.48 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: 0.00 Total: -2.97 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.67 Total: -42.17 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -0.66 Total: -10.77 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.24 -6.68 -37.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355379294.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.696 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds