Wall clock time and date at job start Tue Mar 31 2020 07:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34234 * 116.99726 * 2 1 4 4 O 1.20820 * 120.00116 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99843 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.57437 * 60.15774 * 5 3 2 7 7 C 1.53126 * 109.52204 * 299.99965 * 5 3 2 8 8 C 1.53029 * 109.27795 * 182.44080 * 7 5 3 9 9 N 1.46854 * 109.52283 * 59.18140 * 8 7 5 10 10 C 1.46901 * 111.00034 * 174.15832 * 9 8 7 11 11 C 1.53004 * 109.47242 * 293.95897 * 10 9 8 12 12 H 1.08993 * 109.47493 * 54.99279 * 11 10 9 13 13 C 1.47205 * 109.46466 * 294.99683 * 11 10 9 14 14 N 7.83009 * 132.96750 * 54.35004 * 2 1 3 15 15 C 1.52998 * 109.46955 * 174.99994 * 11 10 9 16 16 C 1.50699 * 109.47007 * 184.99482 * 15 11 10 17 17 H 1.08003 * 119.99887 * 359.97438 * 16 15 11 18 18 C 1.37880 * 120.00343 * 180.02562 * 16 15 11 19 19 N 1.31515 * 119.99754 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00265 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.47075 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47245 * 119.99605 * 20 18 16 23 23 H 1.48502 * 109.47198 * 239.99967 * 20 18 16 24 24 C 1.46843 * 111.19690 * 298.25524 * 9 8 7 25 25 C 1.53039 * 109.52391 * 61.74512 * 24 9 8 26 26 H 1.08997 * 109.50468 * 180.87980 * 25 24 9 27 27 C 1.53002 * 109.50513 * 60.75440 * 25 24 9 28 28 H 1.08996 * 109.47168 * 59.99677 * 1 2 3 29 29 H 1.09005 * 109.46670 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46803 * 299.99377 * 1 2 3 31 31 H 1.08994 * 109.50285 * 302.38722 * 7 5 3 32 32 H 1.08998 * 109.50137 * 62.46400 * 7 5 3 33 33 H 1.08999 * 109.46487 * 179.19278 * 8 7 5 34 34 H 1.09003 * 109.46546 * 299.17608 * 8 7 5 35 35 H 1.09008 * 109.47071 * 53.95431 * 10 9 8 36 36 H 1.08997 * 109.47083 * 173.95301 * 10 9 8 37 37 H 1.08993 * 109.47327 * 304.99249 * 15 11 10 38 38 H 1.09004 * 109.47179 * 64.99955 * 15 11 10 39 39 H 0.96996 * 119.99747 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.45906 * 181.75382 * 24 9 8 41 41 H 1.08994 * 109.46526 * 301.73687 * 24 9 8 42 42 H 1.09001 * 109.47199 * 300.20296 * 27 25 24 43 43 H 1.08998 * 109.46435 * 60.19897 * 27 25 24 44 44 H 1.08997 * 109.46964 * 180.19603 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9574 0.7839 -0.8916 7 6 4.1156 0.5809 1.2489 8 6 5.6396 0.7172 1.2739 9 7 6.0051 2.1395 1.2816 10 6 7.4550 2.3096 1.4449 11 6 7.8730 1.8188 2.8325 12 1 7.5377 0.7909 2.9706 13 6 7.2620 2.6766 3.8609 14 7 6.7888 3.3394 4.6558 15 6 9.3967 1.8794 2.9572 16 6 9.8169 1.2822 4.2755 17 1 9.0716 0.8983 4.9565 18 6 11.1526 1.2270 4.6129 19 7 12.0601 1.6949 3.7839 20 14 11.6735 0.4862 6.2466 21 1 10.4706 0.0346 6.9914 22 1 12.5686 -0.6731 6.0016 23 1 12.3952 1.5086 7.0461 24 6 5.5291 2.8165 0.0685 25 6 4.0017 2.7430 0.0076 26 1 3.6498 3.2320 -0.9007 27 6 3.4073 3.4452 1.2301 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.6938 1.0472 2.1393 32 1 3.8444 -0.4746 1.2278 33 1 6.0326 0.2364 2.1697 34 1 6.0616 0.2387 0.3900 35 1 7.9769 1.7311 0.6825 36 1 7.7112 3.3638 1.3399 37 1 9.8507 1.3160 2.1421 38 1 9.7243 2.9178 2.9079 39 1 12.9998 1.6556 4.0210 40 1 5.8418 3.8605 0.0890 41 1 5.9514 2.3280 -0.8095 42 1 3.7613 2.9565 2.1378 43 1 3.7176 4.4901 1.2353 44 1 2.3195 3.3894 1.1879 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355379294.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:02 Heat of formation + Delta-G solvation = -87.367802 kcal Electronic energy + Delta-G solvation = -24112.547280 eV Core-core repulsion = 20642.865378 eV Total energy + Delta-G solvation = -3469.681902 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.92663 -40.14650 -38.16748 -37.42619 -35.80050 -34.97494 -32.93180 -32.67925 -29.36320 -28.58160 -27.65994 -26.09742 -24.09871 -23.80811 -23.01497 -22.03992 -19.70087 -18.61223 -18.50440 -18.14418 -17.73591 -17.40874 -16.71042 -16.38214 -15.76381 -15.64231 -15.28852 -15.00209 -14.65879 -14.55090 -14.42939 -14.18625 -14.04069 -13.70404 -13.45994 -13.16013 -13.04374 -12.99593 -12.83056 -12.63882 -12.51903 -12.44013 -12.33020 -12.22203 -12.01843 -11.85055 -11.70133 -11.50503 -11.36485 -11.24670 -11.10033 -10.83050 -10.53215 -9.09094 -8.17658 -6.25147 1.17428 1.39929 1.43613 1.53523 1.78640 2.10786 2.18420 2.43050 2.97285 3.18238 3.40348 3.52624 3.74668 3.84073 4.09650 4.20284 4.30004 4.31893 4.33962 4.35039 4.42070 4.50774 4.66586 4.69738 4.72465 4.78744 4.85128 4.87072 4.90529 4.97576 5.07258 5.11933 5.18058 5.19303 5.30653 5.45850 5.50556 5.63603 5.66235 5.82355 6.13599 6.26754 6.29881 6.76101 6.86739 6.98576 7.43390 8.93389 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028100 B = 0.003143 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.212860 B = 8907.668569 C = 9116.438309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.466 3.534 4 O -0.529 6.529 5 C -0.072 4.072 6 H 0.133 0.867 7 C -0.102 4.102 8 C 0.050 3.950 9 N -0.556 5.556 10 C 0.075 3.925 11 C 0.021 3.979 12 H 0.119 0.881 13 C 0.267 3.733 14 N -0.519 5.519 15 C 0.038 3.962 16 C -0.536 4.536 17 H 0.053 0.947 18 C 0.012 3.988 19 N -0.923 5.923 20 Si 0.946 3.054 21 H -0.270 1.270 22 H -0.272 1.272 23 H -0.287 1.287 24 C 0.065 3.935 25 C -0.065 4.065 26 H 0.085 0.915 27 C -0.148 4.148 28 H 0.062 0.938 29 H 0.130 0.870 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.038 0.962 38 H 0.000 1.000 39 H 0.263 0.737 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.043 0.957 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.645 -5.990 -13.924 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.311 3.689 4 O -0.419 6.419 5 C -0.091 4.091 6 H 0.150 0.850 7 C -0.140 4.140 8 C -0.077 4.077 9 N -0.281 5.281 10 C -0.054 4.054 11 C -0.001 4.001 12 H 0.136 0.864 13 C -0.049 4.049 14 N -0.196 5.196 15 C -0.001 4.001 16 C -0.574 4.574 17 H 0.071 0.929 18 C -0.187 4.187 19 N -0.563 5.563 20 Si 0.772 3.228 21 H -0.194 1.194 22 H -0.198 1.198 23 H -0.213 1.213 24 C -0.062 4.062 25 C -0.084 4.084 26 H 0.103 0.897 27 C -0.205 4.205 28 H 0.081 0.919 29 H 0.148 0.852 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.018 0.982 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.656 -4.473 -12.346 23.639 hybrid contribution 0.891 -0.453 0.259 1.033 sum -18.765 -4.926 -12.087 22.858 Atomic orbital electron populations 1.23505 0.75207 1.05536 1.02278 1.86514 1.24642 1.33010 1.83647 1.24145 0.92615 0.81048 0.71090 1.90591 1.67969 1.36987 1.46317 1.21262 0.85829 0.99052 1.02990 0.84955 1.21572 0.95412 1.01365 0.95652 1.22217 0.94816 0.88013 1.02679 1.61837 1.13319 1.13863 1.39072 1.22021 0.87366 1.02079 0.93927 1.19246 0.95800 0.96567 0.88492 0.86383 1.29484 0.90188 0.92471 0.92778 1.81069 1.13415 1.12441 1.12702 1.18992 0.87855 0.96528 0.96696 1.21585 0.92184 1.39551 1.04085 0.92893 1.25686 0.97117 0.95975 0.99943 1.70032 1.01348 1.47393 1.37560 0.85679 0.78378 0.78345 0.80377 1.19400 1.19762 1.21336 1.22092 0.93579 0.99749 0.90798 1.20995 0.94838 0.92943 0.99598 0.89654 1.21942 1.00994 0.99634 0.97920 0.91882 0.85230 0.92516 0.92374 0.88480 0.90056 0.91971 0.90681 0.90693 0.94422 0.98180 0.92766 0.90513 0.92269 0.93197 0.93774 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.36 -6.37 10.49 -51.45 -0.54 -6.91 16 3 C 0.47 9.49 6.96 71.24 0.50 9.98 16 4 O -0.53 -13.63 13.28 21.98 0.29 -13.34 16 5 C -0.07 -1.22 2.48 -11.46 -0.03 -1.24 16 6 H 0.13 1.56 8.14 -2.39 -0.02 1.55 16 7 C -0.10 -1.80 4.95 30.65 0.15 -1.65 16 8 C 0.05 0.95 5.30 86.32 0.46 1.41 16 9 N -0.56 -12.74 3.64 -896.35 -3.26 -16.00 16 10 C 0.07 1.96 4.32 86.30 0.37 2.33 16 11 C 0.02 0.71 2.14 -12.60 -0.03 0.69 16 12 H 0.12 3.69 6.23 -2.39 -0.01 3.67 16 13 C 0.27 10.91 13.68 89.42 1.22 12.13 16 14 N -0.52 -23.54 18.55 20.03 0.37 -23.17 16 15 C 0.04 1.71 4.42 29.85 0.13 1.84 16 16 C -0.54 -27.96 8.60 25.60 0.22 -27.74 16 17 H 0.05 2.75 7.59 -2.91 -0.02 2.73 16 18 C 0.01 0.63 5.46 84.66 0.46 1.09 16 19 N -0.92 -52.44 13.29 21.45 0.28 -52.15 16 20 Si 0.95 43.13 29.54 68.60 2.03 45.15 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 24 C 0.07 1.23 4.90 86.33 0.42 1.66 16 25 C -0.06 -1.26 2.42 -10.74 -0.03 -1.28 16 26 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 27 C -0.15 -3.70 8.40 71.98 0.60 -3.09 16 28 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 29 H 0.13 0.82 8.14 -2.38 -0.02 0.81 16 30 H 0.06 0.79 8.13 -2.38 -0.02 0.77 16 31 H 0.06 1.29 6.58 -2.39 -0.02 1.27 16 32 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 1.68 6.13 -2.39 -0.01 1.66 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 1.69 8.12 -2.38 -0.02 1.67 16 36 H 0.07 2.06 7.98 -2.39 -0.02 2.04 16 37 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 39 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 40 H 0.08 1.53 8.01 -2.39 -0.02 1.51 16 41 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.05 1.41 6.01 -2.39 -0.01 1.40 16 43 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.06 1.65 5.34 -2.39 -0.01 1.64 16 Total: -1.00 -67.23 354.53 5.82 -61.41 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 0.98 Total: 7.34 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 5.66 Total: -2.33 kcal Atomic # 7 Polarization: -88.72 SS G_CDS: -2.60 Total: -91.32 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.25 Total: -20.25 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -67.23 5.82 -61.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355379294.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.955 kcal (2) G-P(sol) polarization free energy of solvation -67.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds