Wall clock time and date at job start Tue Mar 31 2020 07:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 117.00142 * 2 1 4 4 O 1.20833 * 119.99721 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00499 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.51828 * 60.12134 * 5 3 2 7 7 C 1.53118 * 109.52198 * 299.99978 * 5 3 2 8 8 C 1.53039 * 109.27853 * 182.43677 * 7 5 3 9 9 N 1.46843 * 109.52049 * 59.17956 * 8 7 5 10 10 C 1.46899 * 110.99647 * 174.15958 * 9 8 7 11 11 C 1.53003 * 109.47124 * 196.06755 * 10 9 8 12 12 H 1.09002 * 109.46907 * 305.08063 * 11 10 9 13 13 C 1.47203 * 109.46914 * 65.07761 * 11 10 9 14 14 N 7.96986 * 131.54743 * 44.77480 * 2 1 3 15 15 C 1.52996 * 109.47076 * 185.07922 * 11 10 9 16 16 C 1.50702 * 109.47222 * 175.00248 * 15 11 10 17 17 H 1.08008 * 119.99868 * 359.97438 * 16 15 11 18 18 C 1.37878 * 120.00506 * 179.97438 * 16 15 11 19 19 N 1.31511 * 119.99560 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00040 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47160 * 90.00273 * 20 18 16 22 22 H 1.48505 * 109.46638 * 209.99847 * 20 18 16 23 23 H 1.48496 * 109.47356 * 330.00160 * 20 18 16 24 24 C 1.46841 * 111.19845 * 298.25437 * 9 8 7 25 25 C 1.53042 * 109.52208 * 61.74936 * 24 9 8 26 26 H 1.08997 * 109.50523 * 180.88219 * 25 24 9 27 27 C 1.53000 * 109.50697 * 60.75702 * 25 24 9 28 28 H 1.09005 * 109.46990 * 60.00652 * 1 2 3 29 29 H 1.09004 * 109.47234 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47686 * 300.00261 * 1 2 3 31 31 H 1.09001 * 109.50579 * 302.38154 * 7 5 3 32 32 H 1.09008 * 109.50374 * 62.45922 * 7 5 3 33 33 H 1.08997 * 109.45943 * 179.19471 * 8 7 5 34 34 H 1.08998 * 109.46063 * 299.17422 * 8 7 5 35 35 H 1.09005 * 109.47444 * 316.06667 * 10 9 8 36 36 H 1.09002 * 109.47337 * 76.07083 * 10 9 8 37 37 H 1.09007 * 109.47354 * 294.99707 * 15 11 10 38 38 H 1.08993 * 109.47384 * 55.00061 * 15 11 10 39 39 H 0.96996 * 120.00257 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.46402 * 181.75565 * 24 9 8 41 41 H 1.08997 * 109.46674 * 301.74415 * 24 9 8 42 42 H 1.09004 * 109.46778 * 300.19885 * 27 25 24 43 43 H 1.09000 * 109.46885 * 60.20020 * 27 25 24 44 44 H 1.09000 * 109.46780 * 180.19724 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9572 0.7827 -0.8900 7 6 4.1146 0.5814 1.2508 8 6 5.6387 0.7177 1.2768 9 7 6.0041 2.1399 1.2841 10 6 7.4539 2.3100 1.4485 11 6 7.7556 3.7553 1.8499 12 1 7.3173 4.4345 1.1186 13 6 7.1803 4.0260 3.1775 14 7 6.7379 4.2342 4.2011 15 6 9.2702 3.9658 1.8978 16 6 9.5673 5.4174 2.1725 17 1 8.7567 6.1198 2.2997 18 6 10.8738 5.8490 2.2613 19 7 11.8607 4.9937 2.1069 20 14 11.2418 7.6486 2.6011 21 1 11.3311 7.8673 4.0672 22 1 12.5323 8.0183 1.9660 23 1 10.1549 8.4907 2.0403 24 6 5.5291 2.8164 0.0705 25 6 4.0017 2.7429 0.0084 26 1 3.6504 3.2314 -0.9004 27 6 3.4064 3.4457 1.2301 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.6922 1.0481 2.1406 32 1 3.8434 -0.4742 1.2299 33 1 6.0309 0.2373 2.1731 34 1 6.0612 0.2388 0.3935 35 1 7.8133 1.6347 2.2250 36 1 7.9555 2.0820 0.5080 37 1 9.6976 3.3512 2.6902 38 1 9.7072 3.6803 0.9409 39 1 12.7798 5.2973 2.1690 40 1 5.8418 3.8604 0.0906 41 1 5.9520 2.3274 -0.8071 42 1 3.7597 2.9573 2.1383 43 1 3.7167 4.4906 1.2351 44 1 2.3186 3.3899 1.1870 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355379297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:05 Heat of formation + Delta-G solvation = -69.763119 kcal Electronic energy + Delta-G solvation = -24140.730240 eV Core-core repulsion = 20671.811734 eV Total energy + Delta-G solvation = -3468.918506 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.10099 -39.21756 -36.96806 -36.31034 -34.38425 -33.29532 -31.95011 -31.25039 -28.51476 -27.01290 -26.84273 -25.00212 -22.87978 -22.44972 -21.62927 -21.21387 -18.90093 -17.78056 -17.04189 -16.68685 -16.56682 -16.41510 -15.64564 -14.80990 -14.72619 -14.60085 -14.21402 -13.90459 -13.75417 -13.58796 -13.03846 -12.85577 -12.54610 -12.50059 -12.30992 -12.05149 -11.85957 -11.57760 -11.50660 -11.36269 -11.22339 -11.15255 -11.04025 -10.89620 -10.74825 -10.67113 -10.52478 -10.47334 -10.09023 -10.02426 -9.51698 -9.21398 -8.45187 -8.18041 -6.09270 -4.12138 1.99363 2.48023 3.30476 3.37040 3.40500 3.76921 3.87431 3.96246 4.32528 4.41935 4.51887 4.61379 4.80604 4.88160 4.92435 4.96475 5.05307 5.19142 5.21474 5.28785 5.29130 5.41410 5.48926 5.52898 5.69551 5.70837 5.81570 5.83554 5.90570 6.00371 6.01273 6.07222 6.24907 6.36432 6.40154 6.52245 6.64894 7.15929 7.18439 7.43066 7.53684 7.56128 7.86293 8.24063 8.63152 8.92771 9.53393 11.01671 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032880 B = 0.003115 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.381892 B = 8985.888505 C = 9210.777083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.465 3.535 4 O -0.498 6.498 5 C -0.076 4.076 6 H 0.105 0.895 7 C -0.109 4.109 8 C 0.059 3.941 9 N -0.540 5.540 10 C 0.063 3.937 11 C 0.011 3.989 12 H 0.099 0.901 13 C 0.258 3.742 14 N -0.481 5.481 15 C 0.031 3.969 16 C -0.525 4.525 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.057 3.943 25 C -0.069 4.069 26 H 0.079 0.921 27 C -0.155 4.155 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.025 0.975 38 H 0.037 0.963 39 H 0.262 0.738 40 H 0.089 0.911 41 H 0.038 0.962 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.627 -12.931 -8.314 23.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.308 3.692 4 O -0.385 6.385 5 C -0.095 4.095 6 H 0.123 0.877 7 C -0.146 4.146 8 C -0.069 4.069 9 N -0.265 5.265 10 C -0.065 4.065 11 C -0.011 4.011 12 H 0.117 0.883 13 C -0.059 4.059 14 N -0.157 5.157 15 C -0.007 4.007 16 C -0.563 4.563 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.071 4.071 25 C -0.088 4.088 26 H 0.097 0.903 27 C -0.211 4.211 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.056 0.944 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.570 -12.119 -6.371 23.072 hybrid contribution 0.691 0.627 -0.932 1.318 sum -17.879 -11.493 -7.303 22.474 Atomic orbital electron populations 1.23247 0.76599 1.03561 1.02512 1.86518 1.23234 1.33804 1.84155 1.23906 0.92119 0.81136 0.72010 1.90610 1.67229 1.36001 1.44692 1.21239 0.86550 0.99852 1.01868 0.87693 1.21635 0.96008 1.00372 0.96621 1.22038 0.94457 0.89040 1.01363 1.61916 1.14675 1.12008 1.37871 1.22223 0.86092 0.96955 1.01251 1.19224 0.99945 0.95403 0.86505 0.88327 1.28758 0.91009 0.91706 0.94447 1.80909 1.12012 1.10066 1.12757 1.19169 0.85008 0.97803 0.98747 1.21145 0.92120 0.93645 1.49409 0.92518 1.24947 0.96351 0.97658 0.95003 1.69933 0.99197 1.34251 1.49713 0.86602 0.77760 0.85234 0.78548 1.20647 1.21124 1.19732 1.22210 0.93614 1.00701 0.90579 1.21051 0.95051 0.92057 1.00666 0.90292 1.22039 1.01565 1.00206 0.97335 0.92004 0.88218 0.91915 0.90206 0.90387 0.90083 0.94435 0.90224 0.92640 0.95615 0.94509 0.92819 0.89280 0.94393 0.91589 0.92823 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.46 10.49 -39.25 -0.41 -3.87 16 3 C 0.47 5.07 6.96 36.01 0.25 5.33 16 4 O -0.50 -6.65 13.28 -18.76 -0.25 -6.90 16 5 C -0.08 -0.73 2.48 -91.65 -0.23 -0.96 16 6 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 7 C -0.11 -1.02 4.95 -26.65 -0.13 -1.15 16 8 C 0.06 0.59 5.44 -3.83 -0.02 0.57 16 9 N -0.54 -6.72 3.59 -234.67 -0.84 -7.57 16 10 C 0.06 0.89 4.34 -3.82 -0.02 0.87 16 11 C 0.01 0.20 2.23 -93.41 -0.21 -0.01 16 12 H 0.10 1.69 6.49 -51.93 -0.34 1.35 16 13 C 0.26 5.34 13.67 -20.81 -0.28 5.05 16 14 N -0.48 -10.86 18.53 42.09 0.78 -10.08 16 15 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 16 C -0.53 -13.90 8.60 -34.44 -0.30 -14.20 16 17 H 0.06 1.50 7.59 -52.48 -0.40 1.11 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -25.42 13.29 55.43 0.74 -24.68 16 20 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 C 0.06 0.64 4.74 -3.83 -0.02 0.63 16 25 C -0.07 -0.76 2.42 -90.54 -0.22 -0.98 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 27 C -0.15 -2.02 8.40 37.16 0.31 -1.70 16 28 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 31 H 0.08 0.87 6.58 -51.93 -0.34 0.53 16 32 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.08 0.81 7.96 -51.93 -0.41 0.40 16 34 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 1.12 7.87 -51.93 -0.41 0.71 16 36 H 0.06 0.71 8.05 -51.93 -0.42 0.30 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.09 1.09 6.42 -51.93 -0.33 0.76 16 41 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.94 6.01 -51.93 -0.31 0.62 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.98 5.34 -51.93 -0.28 0.70 16 LS Contribution 354.86 15.07 5.35 5.35 Total: -1.00 -31.36 354.86 -6.70 -38.06 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -7.02 Total: -3.57 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -0.01 Total: -3.03 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.67 Total: -42.33 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -0.66 Total: -10.77 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.36 -6.70 -38.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355379297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.701 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds