Wall clock time and date at job start Tue Mar 31 2020 07:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 117.00142 * 2 1 4 4 O 1.20833 * 119.99721 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00499 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.51828 * 60.12134 * 5 3 2 7 7 C 1.53118 * 109.52198 * 299.99978 * 5 3 2 8 8 C 1.53039 * 109.27853 * 182.43677 * 7 5 3 9 9 N 1.46843 * 109.52049 * 59.17956 * 8 7 5 10 10 C 1.46899 * 110.99647 * 174.15958 * 9 8 7 11 11 C 1.53003 * 109.47124 * 196.06755 * 10 9 8 12 12 H 1.09002 * 109.46907 * 305.08063 * 11 10 9 13 13 C 1.47203 * 109.46914 * 65.07761 * 11 10 9 14 14 N 7.96986 * 131.54743 * 44.77480 * 2 1 3 15 15 C 1.52996 * 109.47076 * 185.07922 * 11 10 9 16 16 C 1.50702 * 109.47222 * 175.00248 * 15 11 10 17 17 H 1.08008 * 119.99868 * 359.97438 * 16 15 11 18 18 C 1.37878 * 120.00506 * 179.97438 * 16 15 11 19 19 N 1.31511 * 119.99560 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00040 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47160 * 90.00273 * 20 18 16 22 22 H 1.48505 * 109.46638 * 209.99847 * 20 18 16 23 23 H 1.48496 * 109.47356 * 330.00160 * 20 18 16 24 24 C 1.46841 * 111.19845 * 298.25437 * 9 8 7 25 25 C 1.53042 * 109.52208 * 61.74936 * 24 9 8 26 26 H 1.08997 * 109.50523 * 180.88219 * 25 24 9 27 27 C 1.53000 * 109.50697 * 60.75702 * 25 24 9 28 28 H 1.09005 * 109.46990 * 60.00652 * 1 2 3 29 29 H 1.09004 * 109.47234 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47686 * 300.00261 * 1 2 3 31 31 H 1.09001 * 109.50579 * 302.38154 * 7 5 3 32 32 H 1.09008 * 109.50374 * 62.45922 * 7 5 3 33 33 H 1.08997 * 109.45943 * 179.19471 * 8 7 5 34 34 H 1.08998 * 109.46063 * 299.17422 * 8 7 5 35 35 H 1.09005 * 109.47444 * 316.06667 * 10 9 8 36 36 H 1.09002 * 109.47337 * 76.07083 * 10 9 8 37 37 H 1.09007 * 109.47354 * 294.99707 * 15 11 10 38 38 H 1.08993 * 109.47384 * 55.00061 * 15 11 10 39 39 H 0.96996 * 120.00257 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.46402 * 181.75565 * 24 9 8 41 41 H 1.08997 * 109.46674 * 301.74415 * 24 9 8 42 42 H 1.09004 * 109.46778 * 300.19885 * 27 25 24 43 43 H 1.09000 * 109.46885 * 60.20020 * 27 25 24 44 44 H 1.09000 * 109.46780 * 180.19724 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9572 0.7827 -0.8900 7 6 4.1146 0.5814 1.2508 8 6 5.6387 0.7177 1.2768 9 7 6.0041 2.1399 1.2841 10 6 7.4539 2.3100 1.4485 11 6 7.7556 3.7553 1.8499 12 1 7.3173 4.4345 1.1186 13 6 7.1803 4.0260 3.1775 14 7 6.7379 4.2342 4.2011 15 6 9.2702 3.9658 1.8978 16 6 9.5673 5.4174 2.1725 17 1 8.7567 6.1198 2.2997 18 6 10.8738 5.8490 2.2613 19 7 11.8607 4.9937 2.1069 20 14 11.2418 7.6486 2.6011 21 1 11.3311 7.8673 4.0672 22 1 12.5323 8.0183 1.9660 23 1 10.1549 8.4907 2.0403 24 6 5.5291 2.8164 0.0705 25 6 4.0017 2.7429 0.0084 26 1 3.6504 3.2314 -0.9004 27 6 3.4064 3.4457 1.2301 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.6922 1.0481 2.1406 32 1 3.8434 -0.4742 1.2299 33 1 6.0309 0.2373 2.1731 34 1 6.0612 0.2388 0.3935 35 1 7.8133 1.6347 2.2250 36 1 7.9555 2.0820 0.5080 37 1 9.6976 3.3512 2.6902 38 1 9.7072 3.6803 0.9409 39 1 12.7798 5.2973 2.1690 40 1 5.8418 3.8604 0.0906 41 1 5.9520 2.3274 -0.8071 42 1 3.7597 2.9573 2.1383 43 1 3.7167 4.4906 1.2351 44 1 2.3186 3.3899 1.1870 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355379297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:04 Heat of formation + Delta-G solvation = -87.614722 kcal Electronic energy + Delta-G solvation = -24141.504343 eV Core-core repulsion = 20671.811734 eV Total energy + Delta-G solvation = -3469.692610 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.92545 -40.13902 -38.16098 -37.44646 -35.82048 -34.97749 -33.14533 -32.50863 -29.38815 -28.43155 -27.70325 -26.25822 -24.10399 -23.49701 -23.18047 -22.05190 -19.74955 -18.59706 -18.54316 -18.06041 -17.69152 -17.45168 -16.74916 -16.37948 -15.77669 -15.65694 -15.24098 -15.02311 -14.69375 -14.53378 -14.44783 -14.17571 -13.91803 -13.68748 -13.47452 -13.29140 -13.03959 -12.97742 -12.86702 -12.61494 -12.52186 -12.46504 -12.31678 -12.21569 -12.00550 -11.86885 -11.68360 -11.49744 -11.37975 -11.27688 -11.07486 -10.85248 -10.53752 -9.09276 -8.18192 -6.25649 1.17798 1.40037 1.42673 1.51462 1.78189 2.13402 2.21062 2.42416 2.97621 3.17566 3.41727 3.52531 3.73914 3.85481 4.09849 4.22535 4.30774 4.32300 4.33545 4.35775 4.41216 4.50830 4.66843 4.71471 4.72379 4.79449 4.80429 4.89219 4.94494 4.99609 5.05546 5.07618 5.18911 5.19459 5.31441 5.45975 5.49843 5.63476 5.66013 5.81780 6.13651 6.26548 6.30761 6.76480 6.86011 6.98911 7.42676 8.92620 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032880 B = 0.003115 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.381892 B = 8985.888505 C = 9210.777083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.466 3.534 4 O -0.529 6.529 5 C -0.072 4.072 6 H 0.133 0.867 7 C -0.102 4.102 8 C 0.060 3.940 9 N -0.556 5.556 10 C 0.075 3.925 11 C 0.021 3.979 12 H 0.112 0.888 13 C 0.268 3.732 14 N -0.518 5.518 15 C 0.039 3.961 16 C -0.538 4.538 17 H 0.051 0.949 18 C 0.013 3.987 19 N -0.922 5.922 20 Si 0.945 3.055 21 H -0.285 1.285 22 H -0.278 1.278 23 H -0.266 1.266 24 C 0.058 3.942 25 C -0.065 4.065 26 H 0.083 0.917 27 C -0.147 4.147 28 H 0.061 0.939 29 H 0.131 0.869 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.002 0.998 38 H 0.037 0.963 39 H 0.264 0.736 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.039 0.961 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.135 -14.135 -9.763 24.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.311 3.689 4 O -0.419 6.419 5 C -0.091 4.091 6 H 0.150 0.850 7 C -0.139 4.139 8 C -0.068 4.068 9 N -0.281 5.281 10 C -0.054 4.054 11 C -0.001 4.001 12 H 0.130 0.870 13 C -0.048 4.048 14 N -0.195 5.195 15 C 0.000 4.000 16 C -0.576 4.576 17 H 0.069 0.931 18 C -0.186 4.186 19 N -0.562 5.562 20 Si 0.771 3.229 21 H -0.211 1.211 22 H -0.203 1.203 23 H -0.190 1.190 24 C -0.070 4.070 25 C -0.084 4.084 26 H 0.101 0.899 27 C -0.204 4.204 28 H 0.080 0.920 29 H 0.149 0.851 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.117 0.883 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.020 0.980 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.094 -13.341 -7.827 24.573 hybrid contribution 0.776 0.974 -0.465 1.329 sum -18.319 -12.367 -8.292 23.607 Atomic orbital electron populations 1.23505 0.75220 1.05552 1.02258 1.86505 1.24618 1.32955 1.83677 1.24157 0.92624 0.81055 0.71110 1.90603 1.67978 1.37046 1.46268 1.21254 0.85817 0.98902 1.03110 0.84955 1.21581 0.95439 1.01344 0.95574 1.22092 0.94781 0.87463 1.02416 1.61809 1.13393 1.13959 1.38972 1.22025 0.87617 0.93685 1.02065 1.19206 0.96630 0.98801 0.85480 0.87036 1.29299 0.90229 0.90554 0.94693 1.80905 1.13207 1.11511 1.13922 1.18985 0.88067 0.95332 0.97613 1.21557 0.91979 0.95479 1.48567 0.93084 1.25669 0.96527 1.01219 0.95202 1.70017 0.99480 1.35815 1.50920 0.85752 0.77995 0.81213 0.77978 1.21119 1.20286 1.18984 1.22208 0.93611 1.00203 0.90973 1.20987 0.94832 0.93068 0.99536 0.89863 1.21935 1.00969 0.99514 0.97977 0.91994 0.85135 0.92512 0.92299 0.88315 0.90116 0.92196 0.90293 0.90659 0.97995 0.94491 0.92727 0.90514 0.92099 0.93023 0.94169 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.36 -6.19 10.49 -51.38 -0.54 -6.72 16 3 C 0.47 9.45 6.96 71.24 0.50 9.95 16 4 O -0.53 -13.86 13.28 21.94 0.29 -13.57 16 5 C -0.07 -1.20 2.48 -11.46 -0.03 -1.23 16 6 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 7 C -0.10 -1.67 4.95 30.65 0.15 -1.51 16 8 C 0.06 1.03 5.44 86.33 0.47 1.50 16 9 N -0.56 -12.72 3.59 -896.37 -3.22 -15.94 16 10 C 0.07 1.96 4.34 86.30 0.37 2.33 16 11 C 0.02 0.73 2.23 -12.60 -0.03 0.70 16 12 H 0.11 3.68 6.49 -2.39 -0.02 3.67 16 13 C 0.27 11.08 13.67 89.46 1.22 12.31 16 14 N -0.52 -23.59 18.53 19.99 0.37 -23.22 16 15 C 0.04 1.76 4.42 29.85 0.13 1.89 16 16 C -0.54 -28.42 8.60 25.60 0.22 -28.20 16 17 H 0.05 2.70 7.59 -2.91 -0.02 2.68 16 18 C 0.01 0.70 5.46 84.66 0.46 1.16 16 19 N -0.92 -52.62 13.29 21.45 0.28 -52.34 16 20 Si 0.94 43.54 29.54 68.60 2.03 45.57 16 21 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 C 0.06 1.17 4.74 86.33 0.41 1.58 16 25 C -0.07 -1.33 2.42 -10.74 -0.03 -1.36 16 26 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 27 C -0.15 -3.85 8.40 71.98 0.60 -3.24 16 28 H 0.06 0.77 8.13 -2.38 -0.02 0.75 16 29 H 0.13 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 31 H 0.06 1.23 6.58 -2.39 -0.02 1.21 16 32 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.08 1.42 7.96 -2.39 -0.02 1.40 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 2.09 7.87 -2.38 -0.02 2.07 16 36 H 0.08 1.70 8.05 -2.39 -0.02 1.68 16 37 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 40 H 0.08 1.75 6.42 -2.39 -0.02 1.74 16 41 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.05 1.48 6.01 -2.38 -0.01 1.47 16 43 H 0.04 1.11 8.14 -2.39 -0.02 1.10 16 44 H 0.06 1.72 5.34 -2.39 -0.01 1.71 16 Total: -1.00 -67.64 354.86 5.85 -61.78 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 0.98 Total: 7.03 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 5.66 Total: -2.59 kcal Atomic # 7 Polarization: -88.93 SS G_CDS: -2.57 Total: -91.49 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.25 Total: -20.30 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -67.64 5.85 -61.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355379297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.831 kcal (2) G-P(sol) polarization free energy of solvation -67.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds