Wall clock time and date at job start Tue Mar 31 2020 06:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 120.00357 * 2 1 4 4 N 1.46495 * 109.47232 * 125.00128 * 3 2 1 5 5 C 1.46498 * 120.00364 * 274.37335 * 4 3 2 6 6 C 1.50708 * 109.47052 * 269.99668 * 5 4 3 7 7 H 1.08001 * 119.99528 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99833 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00428 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99486 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47527 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47440 * 120.00156 * 10 8 6 13 13 H 1.48505 * 109.46798 * 239.99810 * 10 8 6 14 14 C 1.34779 * 119.99896 * 94.36722 * 4 3 2 15 15 O 1.21283 * 119.99956 * 184.66754 * 14 4 3 16 16 C 1.50697 * 119.99978 * 4.66931 * 14 4 3 17 17 H 1.08996 * 110.78128 * 328.14895 * 16 14 4 18 18 C 1.55400 * 110.85266 * 91.44710 * 16 14 4 19 19 C 1.54915 * 101.66535 * 153.70055 * 18 16 14 20 20 N 1.47428 * 104.83205 * 323.07574 * 19 18 16 21 21 C 1.34777 * 125.64701 * 204.09345 * 20 19 18 22 22 O 1.21278 * 119.99766 * 180.02562 * 21 20 19 23 23 C 1.50698 * 119.99862 * 0.04088 * 21 20 19 24 24 C 1.53001 * 109.46933 * 180.02562 * 23 21 20 25 25 C 1.47021 * 108.70231 * 24.12714 * 20 19 18 26 26 H 1.08001 * 119.99600 * 359.97438 * 1 2 3 27 27 H 1.08003 * 119.99842 * 179.97438 * 1 2 3 28 28 H 1.08001 * 119.99600 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47020 * 5.00653 * 3 2 1 30 30 H 1.09004 * 109.47357 * 245.00649 * 3 2 1 31 31 H 1.09003 * 109.47178 * 29.99156 * 5 4 3 32 32 H 1.09000 * 109.47407 * 149.99608 * 5 4 3 33 33 H 0.96999 * 120.00146 * 179.97438 * 9 8 6 34 34 H 1.08995 * 110.89146 * 35.63194 * 18 16 14 35 35 H 1.08997 * 111.07363 * 271.84793 * 18 16 14 36 36 H 1.09000 * 110.36469 * 204.23498 * 19 18 16 37 37 H 1.09001 * 110.36392 * 81.91471 * 19 18 16 38 38 H 1.08999 * 109.47025 * 299.99920 * 23 21 20 39 39 H 1.09000 * 109.47516 * 60.00361 * 23 21 20 40 40 H 1.09000 * 109.47194 * 179.97438 * 24 23 21 41 41 H 1.08999 * 109.47062 * 300.00517 * 24 23 21 42 42 H 1.09000 * 109.46862 * 59.99793 * 24 23 21 43 43 H 1.09004 * 109.88330 * 118.35686 * 25 20 19 44 44 H 1.08998 * 109.88407 * 239.36728 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5321 1.7751 2.4491 6 6 2.7304 3.2636 2.5763 7 1 3.1579 3.8233 1.7575 8 6 2.3658 3.9108 3.7378 9 7 1.8447 3.2294 4.7346 10 14 2.6109 5.7560 3.8951 11 1 3.2099 6.2844 2.6432 12 1 1.2995 6.4112 4.1319 13 1 3.5189 6.0393 5.0356 14 6 4.2746 0.9484 0.9599 15 8 5.0226 0.8895 1.9128 16 6 4.7770 0.5930 -0.4156 17 1 3.9802 0.1560 -1.0174 18 6 5.3796 1.8384 -1.1233 19 6 6.3889 1.1856 -2.1006 20 7 6.9467 0.0407 -1.3580 21 6 8.1423 -0.5374 -1.5879 22 8 8.5008 -1.4784 -0.9120 23 6 9.0337 -0.0141 -2.6844 24 6 10.3201 -0.8410 -2.7340 25 6 5.9823 -0.3666 -0.3256 26 1 -0.5399 0.9354 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3587 2.1316 0.0897 30 1 2.6213 1.4026 -0.9314 31 1 1.4741 1.5385 2.5619 32 1 3.1032 1.2649 3.2248 33 1 1.5886 3.6847 5.5519 34 1 5.8898 2.4831 -0.4078 35 1 4.6121 2.3906 -1.6656 36 1 7.1783 1.8917 -2.3582 37 1 5.8779 0.8419 -2.9999 38 1 8.5163 -0.0902 -3.6407 39 1 9.2795 1.0292 -2.4862 40 1 10.9647 -0.4628 -3.5275 41 1 10.8377 -0.7654 -1.7778 42 1 10.0740 -1.8841 -2.9325 43 1 5.6553 -1.3905 -0.5071 44 1 6.4415 -0.2935 0.6602 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359386732.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:13 Heat of formation + Delta-G solvation = -52.464157 kcal Electronic energy + Delta-G solvation = -24116.805700 eV Core-core repulsion = 20648.637333 eV Total energy + Delta-G solvation = -3468.168367 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.38224 -39.12741 -37.05203 -35.71782 -33.26508 -33.01865 -32.19277 -31.54881 -29.26086 -27.71688 -25.72363 -25.20495 -23.35884 -22.75618 -21.29264 -19.90331 -19.21584 -18.38806 -17.25764 -17.20010 -16.49885 -15.90089 -15.56354 -15.42487 -14.69535 -14.51342 -14.38567 -14.15759 -13.67440 -13.35121 -12.99283 -12.93046 -12.84270 -12.44388 -12.34191 -12.08936 -11.90179 -11.80819 -11.61487 -11.36968 -11.30915 -11.24109 -11.07704 -10.90215 -10.81986 -10.62822 -10.22675 -9.87676 -9.67362 -9.22282 -8.99640 -8.66241 -8.47099 -7.75050 -6.07662 -4.12934 2.40712 2.60132 2.88380 3.22688 3.26718 3.34919 3.37833 3.89919 4.31374 4.40625 4.44261 4.74867 4.80829 4.89069 4.93162 5.08136 5.14983 5.18312 5.26395 5.28684 5.31585 5.38955 5.42981 5.54524 5.58448 5.72931 5.75539 5.84911 5.96428 6.02166 6.03179 6.14867 6.16171 6.23392 6.76570 6.87500 7.04626 7.42125 7.45547 7.49460 7.88435 8.12728 8.19152 8.33566 8.84546 9.00805 9.52295 11.00491 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.003959 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.465142 B = 7071.595227 C = 8003.620642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.170 4.170 3 C 0.135 3.865 4 N -0.590 5.590 5 C 0.246 3.754 6 C -0.528 4.528 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.517 3.483 15 O -0.535 6.535 16 C -0.127 4.127 17 H 0.102 0.898 18 C -0.118 4.118 19 C 0.101 3.899 20 N -0.619 5.619 21 C 0.524 3.476 22 O -0.541 6.541 23 C -0.139 4.139 24 C -0.137 4.137 25 C 0.118 3.882 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.263 0.737 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.138 -4.250 -19.194 20.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.189 4.189 3 C 0.011 3.989 4 N -0.320 5.320 5 C 0.127 3.873 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.531 5.531 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.302 3.698 15 O -0.412 6.412 16 C -0.149 4.149 17 H 0.120 0.880 18 C -0.156 4.156 19 C -0.022 4.022 20 N -0.353 5.353 21 C 0.313 3.687 22 O -0.418 6.418 23 C -0.179 4.179 24 C -0.195 4.195 25 C -0.004 4.004 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.730 -4.791 -18.117 19.596 hybrid contribution -0.234 1.093 0.165 1.130 sum 5.496 -3.698 -17.952 19.135 Atomic orbital electron populations 1.23826 0.95850 1.01792 1.00339 1.23417 0.96428 0.98991 1.00086 1.20621 0.93122 0.95419 0.89759 1.48185 1.08206 1.63334 1.12297 1.19300 0.95289 0.94828 0.77870 1.21453 1.41727 0.92721 1.00760 0.92393 1.24938 0.95054 0.98594 0.95503 1.69941 1.42260 1.35822 1.05117 0.86455 0.77761 0.85082 0.78177 1.19807 1.20955 1.20876 1.19872 0.82558 0.77998 0.89334 1.90685 1.55272 1.53213 1.42016 1.22443 0.98139 0.97509 0.96780 0.88022 1.22776 0.98397 0.96325 0.98121 1.22382 0.96918 0.87835 0.95050 1.48544 1.17795 1.33518 1.35473 1.20455 0.80241 0.82803 0.85197 1.90712 1.72811 1.28410 1.49859 1.21610 0.96756 1.01744 0.97768 1.21538 0.95485 1.00134 1.02319 1.21834 0.88113 0.97050 0.93417 0.88261 0.88764 0.87773 0.89535 0.90562 0.94892 0.93776 0.92728 0.89483 0.89012 0.90216 0.90933 0.89080 0.88959 0.92119 0.91904 0.92020 0.91364 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 14.32 29.01 0.42 -1.84 16 2 C -0.17 -2.31 9.82 -36.03 -0.35 -2.67 16 3 C 0.13 2.03 5.52 -5.20 -0.03 2.00 16 4 N -0.59 -11.87 2.44 -176.43 -0.43 -12.30 16 5 C 0.25 6.30 5.22 -5.19 -0.03 6.27 16 6 C -0.53 -14.55 9.39 -34.44 -0.32 -14.87 16 7 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 10 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.52 10.24 6.85 -10.99 -0.08 10.17 16 15 O -0.53 -13.22 15.17 5.56 0.08 -13.14 16 16 C -0.13 -1.77 2.38 -89.80 -0.21 -1.98 16 17 H 0.10 1.16 6.50 -51.93 -0.34 0.82 16 18 C -0.12 -1.35 6.45 -24.45 -0.16 -1.51 16 19 C 0.10 0.92 6.69 -2.52 -0.02 0.91 16 20 N -0.62 -7.93 3.33 -170.51 -0.57 -8.50 16 21 C 0.52 7.08 7.85 -10.99 -0.09 6.99 16 22 O -0.54 -9.60 16.31 5.56 0.09 -9.50 16 23 C -0.14 -1.22 5.43 -27.88 -0.15 -1.37 16 24 C -0.14 -1.21 9.20 37.16 0.34 -0.87 16 25 C 0.12 1.78 6.41 -3.06 -0.02 1.76 16 26 H 0.10 1.22 7.84 -52.49 -0.41 0.80 16 27 H 0.09 1.03 8.06 -52.48 -0.42 0.60 16 28 H 0.10 1.36 8.06 -52.49 -0.42 0.93 16 29 H 0.09 1.36 7.76 -51.93 -0.40 0.96 16 30 H 0.08 0.90 5.85 -51.93 -0.30 0.60 16 31 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 32 H 0.04 1.30 7.36 -51.93 -0.38 0.91 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.09 1.21 8.04 -51.93 -0.42 0.79 16 35 H 0.09 0.84 7.95 -51.93 -0.41 0.43 16 36 H 0.08 0.57 7.48 -51.93 -0.39 0.19 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.67 7.85 -51.93 -0.41 0.26 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 42 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.09 1.71 6.78 -51.93 -0.35 1.36 16 LS Contribution 364.84 15.07 5.50 5.50 Total: -1.00 -35.08 364.84 -7.56 -42.64 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -7.16 Total: -0.18 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -0.79 Total: 4.62 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: -0.26 Total: -46.36 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: 0.17 Total: -22.65 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.08 -7.56 -42.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359386732.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.823 kcal (2) G-P(sol) polarization free energy of solvation -35.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds