Wall clock time and date at job start Tue Mar 31 2020 06:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 120.00357 * 2 1 4 4 N 1.46495 * 109.47232 * 125.00128 * 3 2 1 5 5 C 1.46498 * 120.00364 * 274.37335 * 4 3 2 6 6 C 1.50708 * 109.47052 * 269.99668 * 5 4 3 7 7 H 1.08001 * 119.99528 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99833 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00428 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99486 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47527 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47440 * 120.00156 * 10 8 6 13 13 H 1.48505 * 109.46798 * 239.99810 * 10 8 6 14 14 C 1.34779 * 119.99896 * 94.36722 * 4 3 2 15 15 O 1.21283 * 119.99956 * 184.66754 * 14 4 3 16 16 C 1.50697 * 119.99978 * 4.66931 * 14 4 3 17 17 H 1.08996 * 110.78128 * 328.14895 * 16 14 4 18 18 C 1.55400 * 110.85266 * 91.44710 * 16 14 4 19 19 C 1.54915 * 101.66535 * 153.70055 * 18 16 14 20 20 N 1.47428 * 104.83205 * 323.07574 * 19 18 16 21 21 C 1.34777 * 125.64701 * 204.09345 * 20 19 18 22 22 O 1.21278 * 119.99766 * 180.02562 * 21 20 19 23 23 C 1.50698 * 119.99862 * 0.04088 * 21 20 19 24 24 C 1.53001 * 109.46933 * 180.02562 * 23 21 20 25 25 C 1.47021 * 108.70231 * 24.12714 * 20 19 18 26 26 H 1.08001 * 119.99600 * 359.97438 * 1 2 3 27 27 H 1.08003 * 119.99842 * 179.97438 * 1 2 3 28 28 H 1.08001 * 119.99600 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47020 * 5.00653 * 3 2 1 30 30 H 1.09004 * 109.47357 * 245.00649 * 3 2 1 31 31 H 1.09003 * 109.47178 * 29.99156 * 5 4 3 32 32 H 1.09000 * 109.47407 * 149.99608 * 5 4 3 33 33 H 0.96999 * 120.00146 * 179.97438 * 9 8 6 34 34 H 1.08995 * 110.89146 * 35.63194 * 18 16 14 35 35 H 1.08997 * 111.07363 * 271.84793 * 18 16 14 36 36 H 1.09000 * 110.36469 * 204.23498 * 19 18 16 37 37 H 1.09001 * 110.36392 * 81.91471 * 19 18 16 38 38 H 1.08999 * 109.47025 * 299.99920 * 23 21 20 39 39 H 1.09000 * 109.47516 * 60.00361 * 23 21 20 40 40 H 1.09000 * 109.47194 * 179.97438 * 24 23 21 41 41 H 1.08999 * 109.47062 * 300.00517 * 24 23 21 42 42 H 1.09000 * 109.46862 * 59.99793 * 24 23 21 43 43 H 1.09004 * 109.88330 * 118.35686 * 25 20 19 44 44 H 1.08998 * 109.88407 * 239.36728 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5321 1.7751 2.4491 6 6 2.7304 3.2636 2.5763 7 1 3.1579 3.8233 1.7575 8 6 2.3658 3.9108 3.7378 9 7 1.8447 3.2294 4.7346 10 14 2.6109 5.7560 3.8951 11 1 3.2099 6.2844 2.6432 12 1 1.2995 6.4112 4.1319 13 1 3.5189 6.0393 5.0356 14 6 4.2746 0.9484 0.9599 15 8 5.0226 0.8895 1.9128 16 6 4.7770 0.5930 -0.4156 17 1 3.9802 0.1560 -1.0174 18 6 5.3796 1.8384 -1.1233 19 6 6.3889 1.1856 -2.1006 20 7 6.9467 0.0407 -1.3580 21 6 8.1423 -0.5374 -1.5879 22 8 8.5008 -1.4784 -0.9120 23 6 9.0337 -0.0141 -2.6844 24 6 10.3201 -0.8410 -2.7340 25 6 5.9823 -0.3666 -0.3256 26 1 -0.5399 0.9354 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3587 2.1316 0.0897 30 1 2.6213 1.4026 -0.9314 31 1 1.4741 1.5385 2.5619 32 1 3.1032 1.2649 3.2248 33 1 1.5886 3.6847 5.5519 34 1 5.8898 2.4831 -0.4078 35 1 4.6121 2.3906 -1.6656 36 1 7.1783 1.8917 -2.3582 37 1 5.8779 0.8419 -2.9999 38 1 8.5163 -0.0902 -3.6407 39 1 9.2795 1.0292 -2.4862 40 1 10.9647 -0.4628 -3.5275 41 1 10.8377 -0.7654 -1.7778 42 1 10.0740 -1.8841 -2.9325 43 1 5.6553 -1.3905 -0.5071 44 1 6.4415 -0.2935 0.6602 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359386732.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:13 Heat of formation + Delta-G solvation = -76.143074 kcal Electronic energy + Delta-G solvation = -24117.832495 eV Core-core repulsion = 20648.637333 eV Total energy + Delta-G solvation = -3469.195162 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.58258 -40.47025 -38.21977 -37.23997 -35.12354 -33.89910 -33.68465 -32.67794 -30.32051 -29.51677 -26.96987 -26.50124 -24.92890 -23.67810 -22.65194 -21.03196 -20.15599 -19.79302 -18.66321 -18.45539 -18.24394 -17.24764 -16.86861 -16.47300 -16.21236 -16.00905 -15.76921 -15.31340 -14.67074 -14.49520 -14.43433 -14.16214 -14.13612 -13.84447 -13.37977 -13.22572 -13.13162 -13.06831 -12.80820 -12.75681 -12.61486 -12.54345 -12.35848 -12.21385 -12.19454 -12.04847 -11.81116 -11.64807 -10.94700 -10.65794 -10.63452 -10.30230 -9.70653 -9.49130 -8.22620 -6.37638 1.31686 1.36814 1.39438 1.50847 1.60843 1.72685 1.89492 2.34594 2.50420 3.07715 3.34731 3.46260 3.69309 3.79459 4.02631 4.14026 4.19590 4.22596 4.26626 4.30032 4.31908 4.45312 4.58897 4.70364 4.78294 4.83721 4.86910 4.94570 4.99541 5.02728 5.07295 5.07841 5.14619 5.20867 5.23571 5.37523 5.51664 5.73417 5.75915 5.96120 6.05342 6.50400 6.68673 6.76033 7.12927 7.26975 7.43518 8.85120 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.003959 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.465142 B = 7071.595227 C = 8003.620642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.187 4.187 3 C 0.131 3.869 4 N -0.593 5.593 5 C 0.263 3.737 6 C -0.540 4.540 7 H 0.060 0.940 8 C 0.005 3.995 9 N -0.931 5.931 10 Si 0.969 3.031 11 H -0.261 1.261 12 H -0.270 1.270 13 H -0.286 1.286 14 C 0.508 3.492 15 O -0.599 6.599 16 C -0.110 4.110 17 H 0.141 0.859 18 C -0.117 4.117 19 C 0.104 3.896 20 N -0.620 5.620 21 C 0.512 3.488 22 O -0.598 6.598 23 C -0.128 4.128 24 C -0.138 4.138 25 C 0.119 3.881 26 H 0.101 0.899 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.021 0.979 32 H -0.009 1.009 33 H 0.266 0.734 34 H 0.054 0.946 35 H 0.127 0.873 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.127 0.873 39 H 0.115 0.885 40 H 0.091 0.909 41 H 0.038 0.962 42 H 0.046 0.954 43 H 0.070 0.930 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.738 -2.520 -23.450 24.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.206 4.206 3 C 0.009 3.991 4 N -0.322 5.322 5 C 0.142 3.858 6 C -0.578 4.578 7 H 0.079 0.921 8 C -0.194 4.194 9 N -0.570 5.570 10 Si 0.793 3.207 11 H -0.184 1.184 12 H -0.195 1.195 13 H -0.212 1.212 14 C 0.297 3.703 15 O -0.480 6.480 16 C -0.132 4.132 17 H 0.158 0.842 18 C -0.155 4.155 19 C -0.017 4.017 20 N -0.353 5.353 21 C 0.303 3.697 22 O -0.479 6.479 23 C -0.167 4.167 24 C -0.196 4.196 25 C -0.005 4.005 26 H 0.119 0.881 27 H 0.131 0.869 28 H 0.128 0.872 29 H 0.098 0.902 30 H 0.137 0.863 31 H 0.039 0.961 32 H 0.009 0.991 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.145 0.855 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.145 0.855 39 H 0.134 0.866 40 H 0.110 0.890 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.291 -3.039 -22.452 23.267 hybrid contribution -0.154 0.496 1.537 1.623 sum 5.138 -2.543 -20.915 21.687 Atomic orbital electron populations 1.24049 0.95610 1.02833 0.98187 1.23358 0.96845 0.98447 1.01977 1.20930 0.92742 0.96131 0.89280 1.48159 1.09414 1.62876 1.11752 1.18694 0.93514 0.93778 0.79860 1.21749 1.41461 0.93583 1.01021 0.92144 1.25903 0.94612 1.03783 0.95089 1.70075 1.43244 1.37975 1.05747 0.85348 0.78107 0.78939 0.78301 1.18439 1.19514 1.21222 1.20922 0.81726 0.76512 0.91178 1.90656 1.56873 1.55749 1.44763 1.22387 0.98504 0.99006 0.93257 0.84153 1.22885 0.99676 0.94925 0.98008 1.22706 0.97298 0.86807 0.94856 1.48703 1.17368 1.34362 1.34906 1.21518 0.80449 0.82072 0.85638 1.90685 1.73974 1.31144 1.52145 1.21697 0.95521 1.02341 0.97171 1.21560 0.96131 0.99741 1.02146 1.21610 0.88939 0.97794 0.92112 0.88102 0.86893 0.87150 0.90240 0.86343 0.96122 0.99077 0.92510 0.92661 0.85467 0.87351 0.86780 0.85472 0.86645 0.88991 0.94246 0.93436 0.91156 0.94087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.88 14.32 67.78 0.97 -2.91 16 2 C -0.19 -4.76 9.82 25.64 0.25 -4.51 16 3 C 0.13 3.71 5.52 85.63 0.47 4.18 16 4 N -0.59 -24.29 2.44 -830.50 -2.03 -26.31 16 5 C 0.26 14.16 5.22 85.64 0.45 14.60 16 6 C -0.54 -30.51 9.39 25.60 0.24 -30.27 16 7 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 8 C 0.00 0.28 5.46 84.65 0.46 0.74 16 9 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 10 Si 0.97 44.24 29.54 68.60 2.03 46.27 16 11 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 12 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 13 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 14 C 0.51 20.77 6.85 87.66 0.60 21.37 16 15 O -0.60 -31.94 15.17 -3.04 -0.05 -31.98 16 16 C -0.11 -2.91 2.38 -10.27 -0.02 -2.94 16 17 H 0.14 2.66 6.50 -2.39 -0.02 2.64 16 18 C -0.12 -2.31 6.45 32.07 0.21 -2.10 16 19 C 0.10 1.42 6.69 86.86 0.58 2.00 16 20 N -0.62 -14.82 3.33 -811.77 -2.70 -17.52 16 21 C 0.51 13.31 7.85 87.66 0.69 13.99 16 22 O -0.60 -22.04 16.31 -3.02 -0.05 -22.09 16 23 C -0.13 -1.81 5.43 29.85 0.16 -1.65 16 24 C -0.14 -2.21 9.20 71.98 0.66 -1.54 16 25 C 0.12 3.64 6.41 86.73 0.56 4.20 16 26 H 0.10 2.28 7.84 -2.91 -0.02 2.26 16 27 H 0.11 2.17 8.06 -2.91 -0.02 2.15 16 28 H 0.11 2.68 8.06 -2.91 -0.02 2.66 16 29 H 0.08 2.38 7.76 -2.39 -0.02 2.37 16 30 H 0.12 2.31 5.85 -2.38 -0.01 2.29 16 31 H 0.02 1.14 8.07 -2.39 -0.02 1.13 16 32 H -0.01 -0.57 7.36 -2.39 -0.02 -0.59 16 33 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 34 H 0.05 1.47 8.04 -2.39 -0.02 1.45 16 35 H 0.13 1.65 7.95 -2.39 -0.02 1.63 16 36 H 0.11 0.94 7.48 -2.39 -0.02 0.92 16 37 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.12 1.16 7.85 -2.39 -0.02 1.14 16 40 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.04 0.80 8.10 -2.39 -0.02 0.78 16 42 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 43 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.04 1.67 6.78 -2.39 -0.02 1.66 16 Total: -1.00 -85.87 364.84 4.73 -81.13 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.97 Total: 11.62 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: 6.28 Total: 15.17 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -4.44 Total: -100.12 kcal Atomic # 8 Polarization: -53.98 SS G_CDS: -0.10 Total: -54.07 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -85.87 4.73 -81.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359386732.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.992 kcal (2) G-P(sol) polarization free energy of solvation -85.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds