Wall clock time and date at job start Tue Mar 31 2020 06:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.04713 * 2 1 4 4 O 1.43898 * 109.90499 * 238.82444 * 2 1 3 5 5 C 1.44423 * 106.99911 * 266.99252 * 4 2 1 6 6 C 1.55108 * 103.55423 * 320.26419 * 5 4 2 7 7 C 1.53581 * 109.90947 * 121.18249 * 2 1 3 8 8 C 1.52472 * 110.45956 * 235.67292 * 7 2 1 9 9 N 1.47128 * 109.30971 * 178.10768 * 8 7 2 10 10 C 1.46896 * 110.99991 * 178.70733 * 9 8 7 11 11 C 1.53002 * 109.47181 * 169.99719 * 10 9 8 12 12 H 1.09002 * 109.47070 * 305.00230 * 11 10 9 13 13 C 1.47201 * 109.46938 * 65.00082 * 11 10 9 14 14 N 7.14192 * 127.16459 * 118.45051 * 2 1 3 15 15 C 1.53000 * 109.47233 * 184.99855 * 11 10 9 16 16 C 1.50698 * 109.46984 * 175.00062 * 15 11 10 17 17 H 1.08008 * 120.00253 * 0.02562 * 16 15 11 18 18 C 1.37881 * 120.00032 * 180.02562 * 16 15 11 19 19 N 1.31516 * 119.99811 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99974 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47359 * 59.99932 * 20 18 16 22 22 H 1.48500 * 109.46959 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46855 * 299.99342 * 20 18 16 24 24 C 1.47019 * 110.67317 * 302.42880 * 9 8 7 25 25 C 1.53103 * 109.37571 * 59.11132 * 24 9 8 26 26 O 1.42319 * 110.57116 * 358.71185 * 7 2 1 27 27 H 1.08997 * 109.47180 * 298.82008 * 1 2 3 28 28 H 1.08998 * 109.47610 * 58.82028 * 1 2 3 29 29 H 1.09007 * 109.47330 * 178.82345 * 1 2 3 30 30 H 1.08997 * 110.61172 * 78.78253 * 5 4 2 31 31 H 1.09003 * 110.60411 * 201.75208 * 5 4 2 32 32 H 1.08997 * 110.93402 * 278.45079 * 6 5 4 33 33 H 1.09004 * 110.92721 * 154.78874 * 6 5 4 34 34 H 1.09002 * 109.50219 * 58.14968 * 8 7 2 35 35 H 1.09001 * 109.52252 * 298.07510 * 8 7 2 36 36 H 1.09008 * 109.47165 * 49.99962 * 10 9 8 37 37 H 1.08997 * 109.47437 * 289.99855 * 10 9 8 38 38 H 1.08990 * 109.47170 * 295.00238 * 15 11 10 39 39 H 1.09001 * 109.46952 * 55.00315 * 15 11 10 40 40 H 0.96997 * 119.99784 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.48589 * 179.08072 * 24 9 8 42 42 H 1.08996 * 109.48772 * 299.13723 * 24 9 8 43 43 H 1.09001 * 109.52136 * 182.71351 * 25 24 9 44 44 H 1.08998 * 109.56259 * 62.57012 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9036 1.0239 0.0000 4 8 2.0199 -0.7004 -1.1576 5 6 2.2318 -2.0732 -0.7622 6 6 2.8294 -1.9526 0.6640 7 6 2.0530 -0.7477 1.2354 8 6 2.9919 0.1442 2.0402 9 7 3.4415 -0.5797 3.2396 10 6 4.3743 0.2363 4.0282 11 6 4.6244 -0.4371 5.3791 12 1 3.6720 -0.6138 5.8789 13 6 5.3130 -1.7208 5.1674 14 7 5.8445 -2.7114 5.0041 15 6 5.4958 0.4717 6.2485 16 6 5.6405 -0.1341 7.6207 17 1 5.1595 -1.0736 7.8498 18 6 6.3870 0.5111 8.5839 19 7 6.9732 1.6548 8.3048 20 14 6.5671 -0.2402 10.2846 21 1 7.2058 -1.5759 10.1707 22 1 7.4127 0.6419 11.1284 23 1 5.2262 -0.3840 10.9066 24 6 2.2916 -1.0003 4.0535 25 6 1.3815 -1.9044 3.2179 26 8 0.9708 -1.2004 2.0412 27 1 -0.3633 0.4954 0.9003 28 1 -0.3634 0.5320 -0.8792 29 1 -0.3634 -1.0275 -0.0211 30 1 1.2867 -2.6156 -0.7375 31 1 2.9380 -2.5612 -1.4340 32 1 3.8982 -1.7427 0.6220 33 1 2.6335 -2.8534 1.2457 34 1 2.4658 1.0511 2.3384 35 1 3.8554 0.4087 1.4299 36 1 3.9453 1.2254 4.1892 37 1 5.3173 0.3325 3.4901 38 1 6.4799 0.5766 5.7919 39 1 5.0275 1.4525 6.3318 40 1 7.4986 2.1085 8.9822 41 1 2.6453 -1.5479 4.9270 42 1 1.7337 -0.1213 4.3763 43 1 0.5038 -2.1786 3.8032 44 1 1.9246 -2.8052 2.9323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369398465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:57 Heat of formation + Delta-G solvation = -59.373155 kcal Electronic energy + Delta-G solvation = -24636.919008 eV Core-core repulsion = 21168.451045 eV Total energy + Delta-G solvation = -3468.467963 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.00720 -38.54994 -37.00017 -35.22494 -33.60305 -32.52623 -31.74109 -31.30571 -29.28392 -27.96927 -26.01468 -24.26750 -23.75465 -22.37851 -21.79523 -20.99624 -19.62728 -17.17149 -16.96592 -16.73655 -16.53303 -16.13111 -15.38067 -15.00314 -14.62228 -14.58763 -14.40329 -14.31243 -13.77148 -13.48484 -13.20088 -12.97317 -12.83162 -12.40341 -12.15479 -12.04523 -11.99725 -11.86765 -11.63167 -11.52541 -11.32267 -11.17812 -11.08174 -11.01054 -10.70293 -10.64486 -10.47470 -10.18697 -9.86296 -9.72405 -9.59272 -9.27405 -8.50636 -8.33713 -6.14630 -4.18481 3.27228 3.32034 3.35138 3.45002 3.59110 3.64872 3.70745 3.78615 4.34821 4.36439 4.50560 4.65593 4.79647 4.87405 4.95689 5.03103 5.08110 5.11901 5.18143 5.23380 5.23504 5.40022 5.45689 5.49782 5.51307 5.60319 5.61465 5.73527 5.80159 5.85881 5.88487 5.92860 5.97824 6.14136 6.28540 6.38483 6.58763 6.92733 6.97497 7.08725 7.35271 7.45258 7.79541 8.16518 8.46898 8.85619 9.47319 10.96174 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031509 B = 0.003341 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.431989 B = 8379.450257 C = 8462.805868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.088 3.912 3 H 0.102 0.898 4 O -0.371 6.371 5 C 0.046 3.954 6 C -0.167 4.167 7 C 0.094 3.906 8 C 0.037 3.963 9 N -0.535 5.535 10 C 0.062 3.938 11 C 0.003 3.997 12 H 0.103 0.897 13 C 0.251 3.749 14 N -0.474 5.474 15 C 0.032 3.968 16 C -0.529 4.529 17 H 0.056 0.944 18 C 0.064 3.936 19 N -0.891 5.891 20 Si 0.892 3.108 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.008 3.992 25 C 0.061 3.939 26 O -0.364 6.364 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.027 0.973 39 H 0.037 0.963 40 H 0.264 0.736 41 H 0.095 0.905 42 H 0.049 0.951 43 H 0.100 0.900 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.327 -2.109 -15.374 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.030 3.970 3 H 0.120 0.880 4 O -0.290 6.290 5 C -0.030 4.030 6 C -0.204 4.204 7 C 0.054 3.946 8 C -0.091 4.091 9 N -0.260 5.260 10 C -0.066 4.066 11 C -0.019 4.019 12 H 0.120 0.880 13 C -0.066 4.066 14 N -0.150 5.150 15 C -0.006 4.006 16 C -0.567 4.567 17 H 0.074 0.926 18 C -0.139 4.139 19 N -0.529 5.529 20 Si 0.719 3.281 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.120 4.120 25 C -0.016 4.016 26 O -0.283 6.283 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.067 0.933 43 H 0.118 0.882 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.317 -3.763 -15.949 20.500 hybrid contribution -0.122 0.590 1.802 1.900 sum -12.438 -3.173 -14.148 19.103 Atomic orbital electron populations 1.21943 0.94423 1.02941 1.01945 1.22650 0.95194 0.96132 0.83050 0.88044 1.88956 1.86101 1.21150 1.32788 1.23580 0.99864 0.84119 0.95432 1.23549 1.01387 0.99239 0.96255 1.22335 0.87024 0.93982 0.91274 1.22627 0.98530 0.95021 0.92950 1.62359 1.15039 1.41496 1.07142 1.22295 0.96595 0.94731 0.92962 1.19390 0.99733 0.87030 0.95731 0.87963 1.28838 0.92712 0.93896 0.91107 1.80997 1.10471 1.12806 1.10752 1.19166 0.94441 0.93793 0.93223 1.21077 1.32236 1.07146 0.96242 0.92593 1.24948 0.95209 0.94804 0.98907 1.69924 1.32762 1.15641 1.34583 0.86649 0.78272 0.79237 0.83902 1.20192 1.21139 1.20034 1.22927 0.91871 0.99795 0.97422 1.22776 0.98578 0.94467 0.85764 1.87921 1.30520 1.74430 1.35444 0.91089 0.92433 0.91960 0.92149 0.88983 0.89219 0.89470 0.93530 0.89279 0.92600 0.89798 0.95480 0.94435 0.92669 0.88668 0.93301 0.88239 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 8.56 37.16 0.32 -1.14 16 2 C 0.09 0.90 3.76 -26.43 -0.10 0.80 16 3 H 0.10 0.94 7.68 -51.93 -0.40 0.54 16 4 O -0.37 -4.24 11.20 -35.23 -0.39 -4.64 16 5 C 0.05 0.45 7.68 38.27 0.29 0.75 16 6 C -0.17 -1.76 5.98 -24.93 -0.15 -1.91 16 7 C 0.09 1.01 0.96 -89.90 -0.09 0.92 16 8 C 0.04 0.41 3.99 -3.97 -0.02 0.40 16 9 N -0.54 -6.86 4.38 -234.60 -1.03 -7.88 16 10 C 0.06 0.89 4.64 -3.83 -0.02 0.87 16 11 C 0.00 0.05 1.73 -93.40 -0.16 -0.11 16 12 H 0.10 1.68 5.94 -51.93 -0.31 1.37 16 13 C 0.25 5.04 13.31 -20.76 -0.28 4.77 16 14 N -0.47 -10.36 18.54 42.15 0.78 -9.58 16 15 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 16 C -0.53 -13.80 8.60 -34.44 -0.30 -14.09 16 17 H 0.06 1.45 7.59 -52.48 -0.40 1.05 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -25.16 13.29 55.43 0.74 -24.43 16 20 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 24 C 0.01 0.09 4.92 -3.71 -0.02 0.08 16 25 C 0.06 0.64 6.73 37.21 0.25 0.89 16 26 O -0.36 -4.08 8.47 -35.23 -0.30 -4.37 16 27 H 0.07 0.66 7.85 -51.93 -0.41 0.25 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.62 7.90 -51.92 -0.41 0.21 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.01 7.78 -51.93 -0.40 0.61 16 33 H 0.09 0.95 6.21 -51.93 -0.32 0.62 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.95 8.05 -51.93 -0.42 0.54 16 36 H 0.06 0.75 8.08 -51.92 -0.42 0.33 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.10 1.21 5.65 -51.93 -0.29 0.91 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.67 6.40 -51.93 -0.33 0.33 16 LS Contribution 348.18 15.07 5.25 5.25 Total: -1.00 -29.81 348.18 -7.51 -37.32 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -7.05 Total: -2.09 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -0.48 Total: -5.55 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.49 Total: -41.89 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.69 Total: -9.01 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.81 -7.51 -37.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369398465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.051 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds