Wall clock time and date at job start Tue Mar 31 2020 06:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.04713 * 2 1 4 4 O 1.43898 * 109.90499 * 238.82444 * 2 1 3 5 5 C 1.44423 * 106.99911 * 266.99252 * 4 2 1 6 6 C 1.55108 * 103.55423 * 320.26419 * 5 4 2 7 7 C 1.53581 * 109.90947 * 121.18249 * 2 1 3 8 8 C 1.52472 * 110.45956 * 235.67292 * 7 2 1 9 9 N 1.47128 * 109.30971 * 178.10768 * 8 7 2 10 10 C 1.46896 * 110.99991 * 178.70733 * 9 8 7 11 11 C 1.53002 * 109.47181 * 169.99719 * 10 9 8 12 12 H 1.09002 * 109.47070 * 305.00230 * 11 10 9 13 13 C 1.47201 * 109.46938 * 65.00082 * 11 10 9 14 14 N 7.14192 * 127.16459 * 118.45051 * 2 1 3 15 15 C 1.53000 * 109.47233 * 184.99855 * 11 10 9 16 16 C 1.50698 * 109.46984 * 175.00062 * 15 11 10 17 17 H 1.08008 * 120.00253 * 0.02562 * 16 15 11 18 18 C 1.37881 * 120.00032 * 180.02562 * 16 15 11 19 19 N 1.31516 * 119.99811 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99974 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47359 * 59.99932 * 20 18 16 22 22 H 1.48500 * 109.46959 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46855 * 299.99342 * 20 18 16 24 24 C 1.47019 * 110.67317 * 302.42880 * 9 8 7 25 25 C 1.53103 * 109.37571 * 59.11132 * 24 9 8 26 26 O 1.42319 * 110.57116 * 358.71185 * 7 2 1 27 27 H 1.08997 * 109.47180 * 298.82008 * 1 2 3 28 28 H 1.08998 * 109.47610 * 58.82028 * 1 2 3 29 29 H 1.09007 * 109.47330 * 178.82345 * 1 2 3 30 30 H 1.08997 * 110.61172 * 78.78253 * 5 4 2 31 31 H 1.09003 * 110.60411 * 201.75208 * 5 4 2 32 32 H 1.08997 * 110.93402 * 278.45079 * 6 5 4 33 33 H 1.09004 * 110.92721 * 154.78874 * 6 5 4 34 34 H 1.09002 * 109.50219 * 58.14968 * 8 7 2 35 35 H 1.09001 * 109.52252 * 298.07510 * 8 7 2 36 36 H 1.09008 * 109.47165 * 49.99962 * 10 9 8 37 37 H 1.08997 * 109.47437 * 289.99855 * 10 9 8 38 38 H 1.08990 * 109.47170 * 295.00238 * 15 11 10 39 39 H 1.09001 * 109.46952 * 55.00315 * 15 11 10 40 40 H 0.96997 * 119.99784 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.48589 * 179.08072 * 24 9 8 42 42 H 1.08996 * 109.48772 * 299.13723 * 24 9 8 43 43 H 1.09001 * 109.52136 * 182.71351 * 25 24 9 44 44 H 1.08998 * 109.56259 * 62.57012 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9036 1.0239 0.0000 4 8 2.0199 -0.7004 -1.1576 5 6 2.2318 -2.0732 -0.7622 6 6 2.8294 -1.9526 0.6640 7 6 2.0530 -0.7477 1.2354 8 6 2.9919 0.1442 2.0402 9 7 3.4415 -0.5797 3.2396 10 6 4.3743 0.2363 4.0282 11 6 4.6244 -0.4371 5.3791 12 1 3.6720 -0.6138 5.8789 13 6 5.3130 -1.7208 5.1674 14 7 5.8445 -2.7114 5.0041 15 6 5.4958 0.4717 6.2485 16 6 5.6405 -0.1341 7.6207 17 1 5.1595 -1.0736 7.8498 18 6 6.3870 0.5111 8.5839 19 7 6.9732 1.6548 8.3048 20 14 6.5671 -0.2402 10.2846 21 1 7.2058 -1.5759 10.1707 22 1 7.4127 0.6419 11.1284 23 1 5.2262 -0.3840 10.9066 24 6 2.2916 -1.0003 4.0535 25 6 1.3815 -1.9044 3.2179 26 8 0.9708 -1.2004 2.0412 27 1 -0.3633 0.4954 0.9003 28 1 -0.3634 0.5320 -0.8792 29 1 -0.3634 -1.0275 -0.0211 30 1 1.2867 -2.6156 -0.7375 31 1 2.9380 -2.5612 -1.4340 32 1 3.8982 -1.7427 0.6220 33 1 2.6335 -2.8534 1.2457 34 1 2.4658 1.0511 2.3384 35 1 3.8554 0.4087 1.4299 36 1 3.9453 1.2254 4.1892 37 1 5.3173 0.3325 3.4901 38 1 6.4799 0.5766 5.7919 39 1 5.0275 1.4525 6.3318 40 1 7.4986 2.1085 8.9822 41 1 2.6453 -1.5479 4.9270 42 1 1.7337 -0.1213 4.3763 43 1 0.5038 -2.1786 3.8032 44 1 1.9246 -2.8052 2.9323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369398465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:56 Heat of formation + Delta-G solvation = -78.464518 kcal Electronic energy + Delta-G solvation = -24637.746871 eV Core-core repulsion = 21168.451045 eV Total energy + Delta-G solvation = -3469.295827 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.86615 -39.58178 -38.22029 -36.54655 -35.40970 -33.59596 -33.13568 -32.17167 -30.19055 -29.28565 -27.36755 -25.23411 -24.89771 -23.68793 -23.15259 -21.92501 -20.50772 -18.60257 -18.20885 -17.94146 -17.63037 -17.19719 -16.69419 -16.17760 -15.95301 -15.60585 -15.37300 -15.21897 -14.86191 -14.70000 -14.46534 -14.15320 -14.06405 -13.79544 -13.67715 -13.26446 -13.05734 -12.99885 -12.86922 -12.78800 -12.67941 -12.52074 -12.43540 -12.23284 -11.98021 -11.88240 -11.74768 -11.44778 -11.35329 -11.08994 -10.66562 -10.57327 -10.51693 -9.32538 -8.20788 -6.29427 1.40511 1.42437 1.49130 2.01065 2.07921 2.40114 2.61826 2.71479 2.92749 3.14634 3.27136 3.52379 3.67340 3.85543 3.95293 4.01608 4.15470 4.19732 4.25485 4.31037 4.37230 4.40449 4.51641 4.60857 4.65852 4.68996 4.72175 4.73138 4.84025 4.91293 4.95328 4.99460 5.08820 5.09861 5.12874 5.40455 5.43669 5.57956 5.76101 5.80075 5.91227 5.97178 6.18121 6.24697 6.80083 6.88720 7.39437 8.89914 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031509 B = 0.003341 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.431989 B = 8379.450257 C = 8462.805868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.085 3.915 3 H 0.112 0.888 4 O -0.386 6.386 5 C 0.047 3.953 6 C -0.165 4.165 7 C 0.095 3.905 8 C 0.038 3.962 9 N -0.543 5.543 10 C 0.072 3.928 11 C 0.015 3.985 12 H 0.121 0.879 13 C 0.263 3.737 14 N -0.507 5.507 15 C 0.038 3.962 16 C -0.541 4.541 17 H 0.055 0.945 18 C 0.013 3.987 19 N -0.923 5.923 20 Si 0.947 3.053 21 H -0.281 1.281 22 H -0.283 1.283 23 H -0.262 1.262 24 C 0.006 3.994 25 C 0.063 3.937 26 O -0.367 6.367 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.001 0.999 39 H 0.035 0.965 40 H 0.264 0.736 41 H 0.086 0.914 42 H 0.055 0.945 43 H 0.120 0.880 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.725 -2.194 -15.606 21.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.027 3.973 3 H 0.129 0.871 4 O -0.306 6.306 5 C -0.029 4.029 6 C -0.203 4.203 7 C 0.055 3.945 8 C -0.090 4.090 9 N -0.269 5.269 10 C -0.056 4.056 11 C -0.006 4.006 12 H 0.139 0.861 13 C -0.054 4.054 14 N -0.184 5.184 15 C 0.000 4.000 16 C -0.579 4.579 17 H 0.073 0.927 18 C -0.186 4.186 19 N -0.563 5.563 20 Si 0.773 3.227 21 H -0.207 1.207 22 H -0.208 1.208 23 H -0.187 1.187 24 C -0.122 4.122 25 C -0.013 4.013 26 O -0.286 6.286 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.020 0.980 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.074 0.926 43 H 0.138 0.862 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.733 -3.854 -16.186 21.574 hybrid contribution 0.308 0.606 1.845 1.966 sum -13.425 -3.249 -14.342 19.911 Atomic orbital electron populations 1.21889 0.93816 1.02588 1.02379 1.22752 0.95671 0.96422 0.82409 0.87063 1.88940 1.86271 1.21891 1.33454 1.23652 1.00397 0.83682 0.95132 1.23502 1.00871 0.99087 0.96841 1.22349 0.86883 0.93941 0.91373 1.22664 0.98863 0.95231 0.92221 1.62321 1.15512 1.41514 1.07506 1.22117 0.97224 0.95101 0.91165 1.19321 0.99019 0.85133 0.97164 0.86141 1.29264 0.92027 0.93988 0.90086 1.80997 1.11387 1.13994 1.12029 1.18984 0.94044 0.94494 0.92521 1.21508 1.31563 1.06992 0.97799 0.92688 1.25704 0.95263 0.95280 1.02398 1.70022 1.33733 1.16862 1.35650 0.85763 0.78709 0.78045 0.80163 1.20668 1.20813 1.18651 1.22960 0.91744 1.00178 0.97270 1.22824 0.99113 0.93784 0.85622 1.87925 1.30687 1.74452 1.35566 0.90889 0.91721 0.92683 0.91633 0.87759 0.90117 0.89869 0.92746 0.88960 0.91153 0.90207 0.98030 0.94716 0.92683 0.89571 0.92646 0.86222 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 8.56 71.98 0.62 -1.92 16 2 C 0.09 1.59 3.76 30.79 0.12 1.70 16 3 H 0.11 1.82 7.68 -2.39 -0.02 1.81 16 4 O -0.39 -8.23 11.20 -148.98 -1.67 -9.90 16 5 C 0.05 0.86 7.68 72.70 0.56 1.42 16 6 C -0.17 -3.30 5.98 31.76 0.19 -3.11 16 7 C 0.09 1.87 0.96 -10.33 -0.01 1.86 16 8 C 0.04 0.78 3.99 86.08 0.34 1.12 16 9 N -0.54 -13.04 4.38 -896.15 -3.92 -16.96 16 10 C 0.07 1.97 4.64 86.30 0.40 2.37 16 11 C 0.02 0.52 1.73 -12.60 -0.02 0.50 16 12 H 0.12 3.75 5.94 -2.39 -0.01 3.74 16 13 C 0.26 10.40 13.31 89.44 1.19 11.59 16 14 N -0.51 -22.05 18.54 20.01 0.37 -21.68 16 15 C 0.04 1.73 4.42 29.85 0.13 1.86 16 16 C -0.54 -28.02 8.60 25.60 0.22 -27.80 16 17 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16 18 C 0.01 0.69 5.46 84.66 0.46 1.15 16 19 N -0.92 -52.36 13.29 21.45 0.28 -52.07 16 20 Si 0.95 42.70 29.54 68.60 2.03 44.73 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 24 C 0.01 0.14 4.92 86.31 0.42 0.56 16 25 C 0.06 1.21 6.73 72.02 0.48 1.70 16 26 O -0.37 -7.48 8.47 -148.98 -1.26 -8.74 16 27 H 0.07 1.21 7.85 -2.39 -0.02 1.19 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 29 H 0.05 1.01 7.90 -2.38 -0.02 0.99 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 1.75 7.78 -2.39 -0.02 1.73 16 33 H 0.08 1.72 6.21 -2.38 -0.01 1.71 16 34 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 1.83 8.05 -2.39 -0.02 1.81 16 36 H 0.07 1.73 8.08 -2.38 -0.02 1.71 16 37 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 39 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 41 H 0.09 2.04 5.65 -2.39 -0.01 2.02 16 42 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.05 1.13 6.40 -2.39 -0.02 1.11 16 Total: -1.00 -62.34 348.18 1.92 -60.42 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.98 Total: 11.21 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 5.11 Total: -7.01 kcal Atomic # 7 Polarization: -87.45 SS G_CDS: -3.27 Total: -90.72 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -2.93 Total: -18.64 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -62.34 1.92 -60.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369398465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.040 kcal (2) G-P(sol) polarization free energy of solvation -62.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds