Wall clock time and date at job start Tue Mar 31 2020 06:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 110.04459 * 2 1 4 4 O 1.43891 * 109.90693 * 238.82350 * 2 1 3 5 5 C 1.44430 * 106.98995 * 214.24519 * 4 2 1 6 6 C 1.55101 * 103.55344 * 39.74642 * 5 4 2 7 7 C 1.53585 * 109.90566 * 121.16831 * 2 1 3 8 8 C 1.52474 * 110.45476 * 3.11818 * 7 2 1 9 9 N 1.47115 * 109.37009 * 292.07878 * 8 7 2 10 10 C 1.46900 * 110.99626 * 178.74627 * 9 8 7 11 11 C 1.53000 * 109.46931 * 293.82792 * 10 9 8 12 12 H 1.08999 * 109.47236 * 54.04851 * 11 10 9 13 13 C 1.47197 * 109.47380 * 294.04307 * 11 10 9 14 14 N 4.66825 * 11.74414 * 64.76788 * 2 1 3 15 15 C 1.53007 * 109.47019 * 174.04537 * 11 10 9 16 16 C 1.50701 * 109.47016 * 184.99932 * 15 11 10 17 17 H 1.07998 * 119.99795 * 0.02562 * 16 15 11 18 18 C 1.37876 * 120.00079 * 179.97438 * 16 15 11 19 19 N 1.31513 * 119.99822 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00184 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47256 * 270.00206 * 20 18 16 22 22 H 1.48505 * 109.46797 * 150.00432 * 20 18 16 23 23 H 1.48496 * 109.46955 * 30.00735 * 20 18 16 24 24 C 1.47017 * 110.68532 * 302.47081 * 9 8 7 25 25 C 1.53095 * 109.32332 * 59.17587 * 24 9 8 26 26 O 1.42299 * 110.57992 * 240.03857 * 7 2 1 27 27 H 1.08996 * 109.47201 * 298.82714 * 1 2 3 28 28 H 1.08996 * 109.46892 * 58.82888 * 1 2 3 29 29 H 1.09002 * 109.47025 * 178.82817 * 1 2 3 30 30 H 1.08991 * 110.61052 * 281.22768 * 5 4 2 31 31 H 1.09007 * 110.60592 * 158.26246 * 5 4 2 32 32 H 1.08998 * 110.93408 * 205.20344 * 6 5 4 33 33 H 1.09004 * 110.96065 * 81.55874 * 6 5 4 34 34 H 1.08995 * 109.48662 * 172.10936 * 8 7 2 35 35 H 1.08998 * 109.48950 * 52.05051 * 8 7 2 36 36 H 1.08998 * 109.47041 * 173.83051 * 10 9 8 37 37 H 1.08998 * 109.47665 * 53.82496 * 10 9 8 38 38 H 1.08998 * 109.46815 * 65.00178 * 15 11 10 39 39 H 1.09003 * 109.46764 * 304.99990 * 15 11 10 40 40 H 0.97002 * 120.00173 * 359.97438 * 19 18 16 41 41 H 1.09000 * 109.49411 * 179.12656 * 24 9 8 42 42 H 1.09000 * 109.49930 * 299.21604 * 24 9 8 43 43 H 1.09004 * 109.52005 * 182.65380 * 25 24 9 44 44 H 1.09004 * 109.56367 * 62.51491 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9036 1.0239 0.0000 4 8 2.0200 -0.7004 -1.1575 5 6 3.2372 -1.3696 -0.7620 6 6 2.9193 -1.8895 0.6642 7 6 2.0529 -0.7474 1.2356 8 6 0.8931 -1.3246 2.0397 9 7 0.1186 -0.2255 2.6367 10 6 -1.0278 -0.7415 3.3967 11 6 -2.0194 -1.4030 2.4375 12 1 -1.5021 -2.1550 1.8417 13 6 -2.5957 -0.3826 1.5468 14 7 -3.0405 0.4051 0.8595 15 6 -3.1382 -2.0697 3.2404 16 6 -4.0470 -2.8245 2.3047 17 1 -3.8463 -2.8286 1.2435 18 6 -5.1339 -3.5106 2.8034 19 7 -5.3780 -3.5059 4.0957 20 14 -6.2608 -4.4455 1.6435 21 1 -7.3516 -3.5492 1.1835 22 1 -6.8447 -5.6117 2.3538 23 1 -5.4817 -4.9192 0.4714 24 6 0.9774 0.6146 3.4841 25 6 2.1168 1.1894 2.6385 26 8 2.8488 0.1140 2.0416 27 1 -0.3633 0.4955 0.9003 28 1 -0.3633 0.5319 -0.8793 29 1 -0.3633 -1.0275 -0.0210 30 1 4.0705 -0.6674 -0.7374 31 1 3.4540 -2.2003 -1.4337 32 1 3.8326 -2.0140 1.2460 33 1 2.3562 -2.8220 0.6228 34 1 1.2823 -1.9663 2.8300 35 1 0.2490 -1.9077 1.3816 36 1 -1.5188 0.0809 3.9167 37 1 -0.6809 -1.4757 4.1238 38 1 -3.7116 -1.3068 3.7671 39 1 -2.7046 -2.7615 3.9626 40 1 -4.7930 -3.0201 4.6980 41 1 0.3884 1.4303 3.9035 42 1 1.3922 0.0120 4.2922 43 1 2.7822 1.7745 3.2734 44 1 1.7050 1.8276 1.8567 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369398466.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:00 Heat of formation + Delta-G solvation = -53.160851 kcal Electronic energy + Delta-G solvation = -25366.486475 eV Core-core repulsion = 21898.287898 eV Total energy + Delta-G solvation = -3468.198578 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.16307 -38.31808 -37.12843 -35.32189 -33.91061 -32.70873 -31.88128 -31.38596 -28.98180 -27.24847 -25.34377 -25.13070 -23.04058 -22.54589 -22.03946 -21.41587 -19.41856 -17.50767 -17.17315 -16.96409 -16.34919 -15.75714 -15.37618 -15.18751 -14.95729 -14.73501 -14.32022 -14.00185 -13.75406 -13.46599 -13.36026 -12.76118 -12.57136 -12.44551 -12.19649 -12.13319 -11.96060 -11.63282 -11.56003 -11.48898 -11.32333 -11.19506 -11.10289 -11.01742 -10.71410 -10.48643 -10.30295 -10.16622 -9.99251 -9.85960 -9.57072 -8.70552 -8.44052 -8.30320 -6.46593 -4.18121 3.39390 3.42315 3.43815 3.54871 3.59840 3.63746 3.72253 3.86225 4.36184 4.47162 4.49458 4.60143 4.70795 4.78330 4.92243 4.97937 5.01960 5.14813 5.26407 5.31729 5.32881 5.43305 5.46851 5.51285 5.52975 5.60913 5.63092 5.63997 5.75219 5.78485 5.81878 6.10967 6.14050 6.20400 6.26071 6.71060 6.76683 6.82837 6.90191 7.02831 7.03497 7.18211 7.98910 8.31781 8.46415 8.75864 9.53061 10.94190 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020273 B = 0.004395 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.839862 B = 6369.795748 C = 6841.597323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.064 3.936 3 H 0.068 0.932 4 O -0.373 6.373 5 C 0.048 3.952 6 C -0.144 4.144 7 C 0.094 3.906 8 C 0.029 3.971 9 N -0.533 5.533 10 C 0.058 3.942 11 C 0.016 3.984 12 H 0.100 0.900 13 C 0.251 3.749 14 N -0.468 5.468 15 C 0.018 3.982 16 C -0.606 4.606 17 H 0.051 0.949 18 C 0.022 3.978 19 N -0.909 5.909 20 Si 1.068 2.932 21 H -0.287 1.287 22 H -0.283 1.283 23 H -0.287 1.287 24 C 0.015 3.985 25 C 0.060 3.940 26 O -0.369 6.369 27 H 0.117 0.883 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.017 0.983 39 H 0.027 0.973 40 H 0.269 0.731 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.099 0.901 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.108 5.210 -1.591 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.006 3.994 3 H 0.086 0.914 4 O -0.292 6.292 5 C -0.029 4.029 6 C -0.182 4.182 7 C 0.053 3.947 8 C -0.099 4.099 9 N -0.257 5.257 10 C -0.070 4.070 11 C -0.005 4.005 12 H 0.118 0.882 13 C -0.066 4.066 14 N -0.145 5.145 15 C -0.021 4.021 16 C -0.644 4.644 17 H 0.070 0.930 18 C -0.183 4.183 19 N -0.544 5.544 20 Si 0.896 3.104 21 H -0.214 1.214 22 H -0.209 1.209 23 H -0.213 1.213 24 C -0.113 4.113 25 C -0.017 4.017 26 O -0.288 6.288 27 H 0.135 0.865 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.068 0.932 35 H 0.119 0.881 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.035 0.965 39 H 0.045 0.955 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.117 0.883 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 16.994 5.720 -3.235 18.221 hybrid contribution 1.665 0.218 1.159 2.040 sum 18.659 5.938 -2.076 19.691 Atomic orbital electron populations 1.22559 0.91710 1.03267 1.04592 1.23212 0.96709 0.95354 0.84123 0.91374 1.88969 1.39484 1.67519 1.33257 1.23530 0.88247 0.96466 0.94658 1.23098 1.00940 0.97372 0.96758 1.22439 0.90787 0.90569 0.90872 1.22773 0.94813 0.93380 0.98906 1.62568 1.08854 1.20727 1.33569 1.22330 0.90321 0.99560 0.94836 1.19078 0.96400 0.91475 0.93594 0.88212 1.28697 0.91706 0.93034 0.93126 1.81021 1.10768 1.12054 1.10645 1.19292 0.91904 0.95333 0.95521 1.21972 1.13150 1.34759 0.94496 0.93031 1.25779 0.97396 0.96584 0.98529 1.70782 1.39754 1.40981 1.02921 0.83549 0.75764 0.76515 0.74589 1.21415 1.20877 1.21317 1.22791 0.95117 0.98225 0.95167 1.22728 0.93424 0.89161 0.96353 1.87902 1.35053 1.40630 1.65235 0.86468 0.93344 0.92319 0.92099 0.88832 0.88985 0.88836 0.93218 0.88092 0.89829 0.92507 0.96458 0.95451 0.92056 0.89334 0.93528 0.88253 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 7.05 37.16 0.26 -2.22 16 2 C 0.06 0.86 3.30 -26.43 -0.09 0.77 16 3 H 0.07 0.92 6.92 -51.93 -0.36 0.56 16 4 O -0.37 -5.25 11.20 -35.23 -0.39 -5.64 16 5 C 0.05 0.50 7.73 38.27 0.30 0.79 16 6 C -0.14 -1.44 6.43 -24.93 -0.16 -1.60 16 7 C 0.09 1.10 0.96 -89.89 -0.09 1.02 16 8 C 0.03 0.35 3.32 -3.98 -0.01 0.34 16 9 N -0.53 -6.61 1.70 -234.62 -0.40 -7.01 16 10 C 0.06 0.80 4.31 -3.82 -0.02 0.78 16 11 C 0.02 0.29 2.15 -93.40 -0.20 0.09 16 12 H 0.10 1.71 6.28 -51.93 -0.33 1.39 16 13 C 0.25 5.03 11.09 -20.76 -0.23 4.80 16 14 N -0.47 -10.14 18.43 42.15 0.78 -9.36 16 15 C 0.02 0.40 3.74 -27.88 -0.10 0.30 16 16 C -0.61 -16.03 8.60 -34.44 -0.30 -16.32 16 17 H 0.05 1.38 7.59 -52.49 -0.40 0.98 16 18 C 0.02 0.60 5.46 -17.82 -0.10 0.50 16 19 N -0.91 -26.39 13.65 55.43 0.76 -25.63 16 20 Si 1.07 24.86 29.90 -169.99 -5.08 19.78 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 24 C 0.02 0.15 5.63 -3.71 -0.02 0.13 16 25 C 0.06 0.59 6.72 37.21 0.25 0.84 16 26 O -0.37 -4.31 10.20 -35.23 -0.36 -4.67 16 27 H 0.12 1.81 4.16 -51.93 -0.22 1.59 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.93 6.33 -51.93 -0.33 0.60 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.09 0.87 7.84 -51.93 -0.41 0.47 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.10 1.32 4.49 -51.93 -0.23 1.09 16 36 H 0.08 1.14 8.03 -51.93 -0.42 0.72 16 37 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 38 H 0.02 0.41 8.01 -51.93 -0.42 -0.01 16 39 H 0.03 0.61 8.01 -51.93 -0.42 0.19 16 40 H 0.27 7.64 7.22 -40.82 -0.29 7.34 16 41 H 0.09 0.82 8.08 -51.93 -0.42 0.40 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.63 6.88 -51.93 -0.36 0.28 16 LS Contribution 337.75 15.07 5.09 5.09 Total: -1.00 -30.91 337.75 -6.88 -37.79 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -6.76 Total: -0.57 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -0.51 Total: -9.77 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 1.13 Total: -42.00 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.75 Total: -10.32 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.08 Total: 19.78 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.91 -6.88 -37.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369398466.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.371 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds