Wall clock time and date at job start Tue Mar 31 2020 06:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 110.04459 * 2 1 4 4 O 1.43891 * 109.90693 * 238.82350 * 2 1 3 5 5 C 1.44430 * 106.98995 * 214.24519 * 4 2 1 6 6 C 1.55101 * 103.55344 * 39.74642 * 5 4 2 7 7 C 1.53585 * 109.90566 * 121.16831 * 2 1 3 8 8 C 1.52474 * 110.45476 * 3.11818 * 7 2 1 9 9 N 1.47115 * 109.37009 * 292.07878 * 8 7 2 10 10 C 1.46900 * 110.99626 * 178.74627 * 9 8 7 11 11 C 1.53000 * 109.46931 * 293.82792 * 10 9 8 12 12 H 1.08999 * 109.47236 * 54.04851 * 11 10 9 13 13 C 1.47197 * 109.47380 * 294.04307 * 11 10 9 14 14 N 4.66825 * 11.74414 * 64.76788 * 2 1 3 15 15 C 1.53007 * 109.47019 * 174.04537 * 11 10 9 16 16 C 1.50701 * 109.47016 * 184.99932 * 15 11 10 17 17 H 1.07998 * 119.99795 * 0.02562 * 16 15 11 18 18 C 1.37876 * 120.00079 * 179.97438 * 16 15 11 19 19 N 1.31513 * 119.99822 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00184 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47256 * 270.00206 * 20 18 16 22 22 H 1.48505 * 109.46797 * 150.00432 * 20 18 16 23 23 H 1.48496 * 109.46955 * 30.00735 * 20 18 16 24 24 C 1.47017 * 110.68532 * 302.47081 * 9 8 7 25 25 C 1.53095 * 109.32332 * 59.17587 * 24 9 8 26 26 O 1.42299 * 110.57992 * 240.03857 * 7 2 1 27 27 H 1.08996 * 109.47201 * 298.82714 * 1 2 3 28 28 H 1.08996 * 109.46892 * 58.82888 * 1 2 3 29 29 H 1.09002 * 109.47025 * 178.82817 * 1 2 3 30 30 H 1.08991 * 110.61052 * 281.22768 * 5 4 2 31 31 H 1.09007 * 110.60592 * 158.26246 * 5 4 2 32 32 H 1.08998 * 110.93408 * 205.20344 * 6 5 4 33 33 H 1.09004 * 110.96065 * 81.55874 * 6 5 4 34 34 H 1.08995 * 109.48662 * 172.10936 * 8 7 2 35 35 H 1.08998 * 109.48950 * 52.05051 * 8 7 2 36 36 H 1.08998 * 109.47041 * 173.83051 * 10 9 8 37 37 H 1.08998 * 109.47665 * 53.82496 * 10 9 8 38 38 H 1.08998 * 109.46815 * 65.00178 * 15 11 10 39 39 H 1.09003 * 109.46764 * 304.99990 * 15 11 10 40 40 H 0.97002 * 120.00173 * 359.97438 * 19 18 16 41 41 H 1.09000 * 109.49411 * 179.12656 * 24 9 8 42 42 H 1.09000 * 109.49930 * 299.21604 * 24 9 8 43 43 H 1.09004 * 109.52005 * 182.65380 * 25 24 9 44 44 H 1.09004 * 109.56367 * 62.51491 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9036 1.0239 0.0000 4 8 2.0200 -0.7004 -1.1575 5 6 3.2372 -1.3696 -0.7620 6 6 2.9193 -1.8895 0.6642 7 6 2.0529 -0.7474 1.2356 8 6 0.8931 -1.3246 2.0397 9 7 0.1186 -0.2255 2.6367 10 6 -1.0278 -0.7415 3.3967 11 6 -2.0194 -1.4030 2.4375 12 1 -1.5021 -2.1550 1.8417 13 6 -2.5957 -0.3826 1.5468 14 7 -3.0405 0.4051 0.8595 15 6 -3.1382 -2.0697 3.2404 16 6 -4.0470 -2.8245 2.3047 17 1 -3.8463 -2.8286 1.2435 18 6 -5.1339 -3.5106 2.8034 19 7 -5.3780 -3.5059 4.0957 20 14 -6.2608 -4.4455 1.6435 21 1 -7.3516 -3.5492 1.1835 22 1 -6.8447 -5.6117 2.3538 23 1 -5.4817 -4.9192 0.4714 24 6 0.9774 0.6146 3.4841 25 6 2.1168 1.1894 2.6385 26 8 2.8488 0.1140 2.0416 27 1 -0.3633 0.4955 0.9003 28 1 -0.3633 0.5319 -0.8793 29 1 -0.3633 -1.0275 -0.0210 30 1 4.0705 -0.6674 -0.7374 31 1 3.4540 -2.2003 -1.4337 32 1 3.8326 -2.0140 1.2460 33 1 2.3562 -2.8220 0.6228 34 1 1.2823 -1.9663 2.8300 35 1 0.2490 -1.9077 1.3816 36 1 -1.5188 0.0809 3.9167 37 1 -0.6809 -1.4757 4.1238 38 1 -3.7116 -1.3068 3.7671 39 1 -2.7046 -2.7615 3.9626 40 1 -4.7930 -3.0201 4.6980 41 1 0.3884 1.4303 3.9035 42 1 1.3922 0.0120 4.2922 43 1 2.7822 1.7745 3.2734 44 1 1.7050 1.8276 1.8567 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369398466.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:59 Heat of formation + Delta-G solvation = -72.310352 kcal Electronic energy + Delta-G solvation = -25367.316860 eV Core-core repulsion = 21898.287898 eV Total energy + Delta-G solvation = -3469.028962 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.09885 -39.39576 -38.36385 -36.61712 -35.75704 -33.64684 -33.45694 -32.42952 -30.01810 -28.55134 -26.79706 -26.09048 -24.51131 -23.65251 -23.43851 -22.38251 -20.35720 -19.10321 -18.46295 -18.19393 -17.54057 -16.70083 -16.38585 -16.24055 -15.99638 -15.74508 -15.68469 -15.41867 -15.08288 -14.82035 -14.69728 -14.03430 -13.93541 -13.68758 -13.50888 -13.36966 -13.24663 -13.04491 -12.80203 -12.75603 -12.56696 -12.43860 -12.33933 -12.10138 -12.05924 -11.97465 -11.79874 -11.63436 -11.31552 -10.85011 -10.69350 -10.53654 -10.48975 -9.26388 -8.63594 -6.34649 1.53698 1.59484 1.77589 1.99536 2.05897 2.52676 2.56185 2.66949 2.97346 3.17027 3.24786 3.44157 3.58311 3.68281 3.92075 3.99387 4.07929 4.10552 4.23045 4.29988 4.34460 4.44166 4.46522 4.54668 4.57259 4.59945 4.70438 4.76190 4.79362 4.83438 4.85061 4.89634 4.99581 5.03376 5.08040 5.18926 5.36387 5.49953 5.77736 5.86060 5.93551 5.98523 6.16194 6.21288 6.63135 6.83625 7.42372 8.78733 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020273 B = 0.004395 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.839862 B = 6369.795748 C = 6841.597323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.066 3.934 3 H 0.065 0.935 4 O -0.399 6.399 5 C 0.043 3.957 6 C -0.140 4.140 7 C 0.097 3.903 8 C 0.030 3.970 9 N -0.543 5.543 10 C 0.069 3.931 11 C 0.026 3.974 12 H 0.109 0.891 13 C 0.261 3.739 14 N -0.500 5.500 15 C 0.022 3.978 16 C -0.613 4.613 17 H 0.043 0.957 18 C -0.027 4.027 19 N -0.935 5.935 20 Si 1.105 2.895 21 H -0.284 1.284 22 H -0.279 1.279 23 H -0.271 1.271 24 C 0.016 3.984 25 C 0.057 3.943 26 O -0.374 6.374 27 H 0.115 0.885 28 H 0.027 0.973 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.000 1.000 39 H 0.031 0.969 40 H 0.262 0.738 41 H 0.099 0.901 42 H 0.056 0.944 43 H 0.127 0.873 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.896 4.913 -1.258 21.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.008 3.992 3 H 0.083 0.917 4 O -0.319 6.319 5 C -0.033 4.033 6 C -0.177 4.177 7 C 0.057 3.943 8 C -0.098 4.098 9 N -0.267 5.267 10 C -0.059 4.059 11 C 0.004 3.996 12 H 0.126 0.874 13 C -0.056 4.056 14 N -0.177 5.177 15 C -0.017 4.017 16 C -0.652 4.652 17 H 0.061 0.939 18 C -0.226 4.226 19 N -0.573 5.573 20 Si 0.928 3.072 21 H -0.211 1.211 22 H -0.204 1.204 23 H -0.196 1.196 24 C -0.111 4.111 25 C -0.019 4.019 26 O -0.293 6.293 27 H 0.133 0.867 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.118 0.882 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.018 0.982 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.117 0.883 42 H 0.075 0.925 43 H 0.144 0.856 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 18.810 5.434 -2.903 19.793 hybrid contribution 1.150 0.356 1.032 1.586 sum 19.960 5.790 -1.870 20.867 Atomic orbital electron populations 1.22454 0.93342 1.02041 1.03420 1.23136 0.95330 0.95610 0.85134 0.91716 1.88937 1.41119 1.67954 1.33906 1.23765 0.87105 0.97042 0.95419 1.23134 1.01358 0.96844 0.96407 1.22383 0.91009 0.90912 0.90038 1.22755 0.94673 0.93366 0.99012 1.62468 1.09148 1.21014 1.34112 1.22145 0.90055 0.99895 0.93841 1.19028 0.95774 0.91261 0.93525 0.87364 1.29136 0.90990 0.92758 0.92672 1.81019 1.11636 1.13341 1.11720 1.19150 0.92556 0.94746 0.95216 1.22360 1.13591 1.34445 0.94761 0.93860 1.26970 0.99081 0.97477 0.99082 1.70883 1.40384 1.42371 1.03631 0.83066 0.74679 0.75789 0.73681 1.21076 1.20411 1.19580 1.22864 0.94973 0.98210 0.95075 1.22897 0.93814 0.88775 0.96395 1.87904 1.35322 1.40953 1.65101 0.86716 0.95429 0.93443 0.91325 0.86956 0.87384 0.88229 0.92100 0.89406 0.89442 0.90886 0.98163 0.95055 0.92805 0.88281 0.92541 0.85557 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.72 7.05 71.98 0.51 -4.21 16 2 C 0.07 1.72 3.30 30.79 0.10 1.82 16 3 H 0.07 1.71 6.92 -2.39 -0.02 1.70 16 4 O -0.40 -10.94 11.20 -148.98 -1.67 -12.61 16 5 C 0.04 0.80 7.73 72.70 0.56 1.36 16 6 C -0.14 -2.46 6.43 31.76 0.20 -2.25 16 7 C 0.10 2.10 0.96 -10.32 -0.01 2.09 16 8 C 0.03 0.66 3.32 86.09 0.29 0.95 16 9 N -0.54 -12.48 1.70 -896.21 -1.52 -14.01 16 10 C 0.07 1.79 4.31 86.30 0.37 2.16 16 11 C 0.03 0.90 2.15 -12.60 -0.03 0.88 16 12 H 0.11 3.63 6.28 -2.39 -0.01 3.61 16 13 C 0.26 10.41 11.09 89.44 0.99 11.41 16 14 N -0.50 -21.80 18.43 20.01 0.37 -21.43 16 15 C 0.02 0.98 3.74 29.85 0.11 1.09 16 16 C -0.61 -32.43 8.60 25.60 0.22 -32.21 16 17 H 0.04 2.31 7.59 -2.91 -0.02 2.29 16 18 C -0.03 -1.49 5.46 84.65 0.46 -1.03 16 19 N -0.94 -54.57 13.65 21.45 0.29 -54.28 16 20 Si 1.10 49.70 29.90 68.60 2.05 51.75 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 C 0.02 0.29 5.63 86.31 0.49 0.77 16 25 C 0.06 0.99 6.72 72.01 0.48 1.47 16 26 O -0.37 -7.75 10.20 -148.98 -1.52 -9.27 16 27 H 0.11 3.52 4.16 -2.39 -0.01 3.51 16 28 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 1.51 6.33 -2.39 -0.02 1.50 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.11 1.57 8.07 -2.39 -0.02 1.55 16 33 H 0.10 1.63 7.84 -2.38 -0.02 1.61 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.09 2.20 4.49 -2.39 -0.01 2.19 16 36 H 0.09 2.22 8.03 -2.39 -0.02 2.20 16 37 H 0.07 1.68 8.12 -2.39 -0.02 1.66 16 38 H 0.00 0.00 8.01 -2.39 -0.02 -0.02 16 39 H 0.03 1.38 8.01 -2.39 -0.02 1.36 16 40 H 0.26 15.06 7.22 -92.71 -0.67 14.39 16 41 H 0.10 1.57 8.08 -2.39 -0.02 1.55 16 42 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 44 H 0.05 1.00 6.88 -2.38 -0.02 0.99 16 Total: -1.00 -66.11 337.75 3.85 -62.26 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 1.09 Total: 13.29 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 4.75 Total: -15.70 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -0.86 Total: -89.72 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -3.19 Total: -21.88 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 2.05 Total: 51.75 kcal Total: -66.11 3.85 -62.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369398466.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.049 kcal (2) G-P(sol) polarization free energy of solvation -66.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds