Wall clock time and date at job start Tue Mar 31 2020 06:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 110.04287 * 2 1 4 4 O 1.43893 * 109.90879 * 238.82824 * 2 1 3 5 5 C 1.44427 * 106.99973 * 266.98556 * 4 2 1 6 6 C 1.55102 * 103.55337 * 320.26679 * 5 4 2 7 7 C 1.53570 * 109.91119 * 121.17639 * 2 1 3 8 8 C 1.52477 * 110.46637 * 235.67297 * 7 2 1 9 9 N 1.47125 * 109.31144 * 178.10865 * 8 7 2 10 10 C 1.46897 * 110.99846 * 178.71559 * 9 8 7 11 11 C 1.53004 * 109.47056 * 293.91557 * 10 9 8 12 12 H 1.09003 * 109.46704 * 56.06015 * 11 10 9 13 13 C 1.47195 * 109.47278 * 296.05570 * 11 10 9 14 14 N 6.30372 * 147.45921 * 122.85456 * 2 1 3 15 15 C 1.53008 * 109.47066 * 176.05762 * 11 10 9 16 16 C 1.50698 * 109.46792 * 185.00230 * 15 11 10 17 17 H 1.07999 * 120.00223 * 359.97438 * 16 15 11 18 18 C 1.37876 * 119.99679 * 179.97438 * 16 15 11 19 19 N 1.31518 * 119.99829 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00200 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47202 * 89.99541 * 20 18 16 22 22 H 1.48503 * 109.47238 * 209.99884 * 20 18 16 23 23 H 1.48507 * 109.47216 * 329.99868 * 20 18 16 24 24 C 1.47027 * 110.67513 * 302.43489 * 9 8 7 25 25 C 1.53095 * 109.37371 * 59.11158 * 24 9 8 26 26 O 1.42315 * 110.57561 * 358.72050 * 7 2 1 27 27 H 1.09000 * 109.47614 * 298.81825 * 1 2 3 28 28 H 1.09004 * 109.47425 * 58.82595 * 1 2 3 29 29 H 1.09008 * 109.46773 * 178.81930 * 1 2 3 30 30 H 1.08999 * 110.60198 * 78.78239 * 5 4 2 31 31 H 1.08994 * 110.60653 * 201.75099 * 5 4 2 32 32 H 1.08996 * 110.93295 * 278.45008 * 6 5 4 33 33 H 1.09003 * 110.93124 * 154.78074 * 6 5 4 34 34 H 1.09005 * 109.49703 * 58.15471 * 8 7 2 35 35 H 1.09004 * 109.52559 * 298.08166 * 8 7 2 36 36 H 1.09001 * 109.47345 * 173.92043 * 10 9 8 37 37 H 1.09000 * 109.47553 * 53.91646 * 10 9 8 38 38 H 1.08997 * 109.47061 * 305.00350 * 15 11 10 39 39 H 1.09002 * 109.46957 * 65.00321 * 15 11 10 40 40 H 0.97000 * 119.99722 * 180.02562 * 19 18 16 41 41 H 1.08995 * 109.48565 * 179.08095 * 24 9 8 42 42 H 1.08999 * 109.48329 * 299.13665 * 24 9 8 43 43 H 1.09004 * 109.51492 * 182.71836 * 25 24 9 44 44 H 1.08997 * 109.56614 * 62.57044 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9036 1.0241 0.0000 4 8 2.0199 -0.7003 -1.1576 5 6 2.2320 -2.0731 -0.7622 6 6 2.8295 -1.9524 0.6640 7 6 2.0530 -0.7475 1.2354 8 6 2.9919 0.1444 2.0402 9 7 3.4415 -0.5795 3.2396 10 6 4.3742 0.2366 4.0283 11 6 5.6619 0.4534 3.2309 12 1 5.4214 0.9034 2.2677 13 6 6.3292 -0.8407 3.0151 14 7 6.8440 -1.8395 2.8484 15 6 6.5937 1.3839 4.0101 16 6 7.8072 1.6958 3.1728 17 1 7.9044 1.2724 2.1840 18 6 8.7934 2.5217 3.6690 19 7 9.8527 2.7935 2.9385 20 14 8.6256 3.2536 5.3794 21 1 9.2399 2.3363 6.3728 22 1 9.3161 4.5675 5.4256 23 1 7.1874 3.4387 5.6998 24 6 2.2916 -1.0002 4.0535 25 6 1.3816 -1.9043 3.2179 26 8 0.9709 -1.2003 2.0412 27 1 -0.3634 0.4954 0.9004 28 1 -0.3634 0.5320 -0.8793 29 1 -0.3633 -1.0275 -0.0212 30 1 1.2869 -2.6155 -0.7376 31 1 2.9382 -2.5610 -1.4339 32 1 3.8982 -1.7425 0.6220 33 1 2.6336 -2.8532 1.2458 34 1 2.4658 1.0513 2.3384 35 1 3.8554 0.4090 1.4299 36 1 4.6067 -0.2767 4.9613 37 1 3.9165 1.2010 4.2485 38 1 6.0682 2.3090 4.2471 39 1 6.9051 0.8961 4.9337 40 1 10.5466 3.3743 3.2877 41 1 2.6453 -1.5477 4.9270 42 1 1.7337 -0.1212 4.3763 43 1 0.5039 -2.1785 3.8032 44 1 1.9248 -2.8051 2.9323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369398467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:02 Heat of formation + Delta-G solvation = -58.111520 kcal Electronic energy + Delta-G solvation = -24899.223710 eV Core-core repulsion = 21430.810456 eV Total energy + Delta-G solvation = -3468.413255 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.00260 -38.44697 -37.05661 -35.27441 -33.59830 -32.48460 -31.89616 -31.35457 -29.25829 -28.20079 -26.23782 -24.62726 -23.30000 -22.36782 -21.49282 -21.09539 -19.63159 -17.26936 -17.13183 -16.79654 -16.46086 -16.35271 -15.38664 -15.06736 -14.82390 -14.51936 -14.19350 -14.18721 -13.76609 -13.51089 -13.26734 -13.11056 -12.79842 -12.52655 -12.25215 -12.09646 -12.01486 -11.94534 -11.82441 -11.45166 -11.41187 -11.29521 -11.20602 -11.03951 -10.76341 -10.48541 -10.28320 -10.04393 -9.92295 -9.78563 -9.62549 -9.35537 -8.64857 -8.43333 -6.13555 -4.14628 3.23977 3.31010 3.32191 3.42232 3.56699 3.65846 3.73638 3.79465 4.35072 4.35750 4.54055 4.68235 4.71400 4.79282 4.92149 5.02904 5.06680 5.12539 5.20908 5.21206 5.22285 5.35503 5.41401 5.49121 5.52190 5.56224 5.58986 5.65341 5.77414 5.80372 5.87624 5.91332 6.00628 6.11841 6.16132 6.22880 6.64520 6.85191 6.87791 6.89214 7.04912 7.07427 7.59638 8.37068 8.49076 8.89798 9.45982 10.99512 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.004077 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.026707 B = 6866.570922 C = 7161.837253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.087 3.913 3 H 0.104 0.896 4 O -0.368 6.368 5 C 0.047 3.953 6 C -0.167 4.167 7 C 0.095 3.905 8 C 0.031 3.969 9 N -0.535 5.535 10 C 0.060 3.940 11 C 0.020 3.980 12 H 0.105 0.895 13 C 0.252 3.748 14 N -0.469 5.469 15 C -0.005 4.005 16 C -0.529 4.529 17 H 0.074 0.926 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.263 1.263 24 C 0.018 3.982 25 C 0.061 3.939 26 O -0.364 6.364 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.036 0.964 39 H 0.021 0.979 40 H 0.265 0.735 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.098 0.902 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.399 -6.008 -0.458 22.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.029 3.971 3 H 0.122 0.878 4 O -0.287 6.287 5 C -0.030 4.030 6 C -0.204 4.204 7 C 0.055 3.945 8 C -0.097 4.097 9 N -0.260 5.260 10 C -0.069 4.069 11 C -0.002 4.002 12 H 0.122 0.878 13 C -0.065 4.065 14 N -0.146 5.146 15 C -0.044 4.044 16 C -0.566 4.566 17 H 0.092 0.908 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.704 3.296 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.188 1.188 24 C -0.110 4.110 25 C -0.016 4.016 26 O -0.283 6.283 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.116 0.884 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.359 -7.718 -1.120 21.802 hybrid contribution -0.155 1.393 1.612 2.136 sum -20.514 -6.325 0.492 21.473 Atomic orbital electron populations 1.21942 0.94496 1.02835 1.01913 1.22659 0.95089 0.96337 0.83035 0.87845 1.88977 1.86063 1.21083 1.32606 1.23574 0.99750 0.84183 0.95470 1.23553 1.01629 0.98954 0.96291 1.22359 0.86840 0.94047 0.91290 1.22750 0.98943 0.94964 0.93040 1.62274 1.14800 1.41749 1.07193 1.22302 0.91601 0.96430 0.96526 1.18989 0.92543 0.86879 1.01803 0.87776 1.28660 0.91878 0.93581 0.92377 1.81001 1.10618 1.13415 1.09522 1.19644 0.94971 0.93883 0.95866 1.21004 1.02458 1.29960 1.03222 0.90769 1.24984 0.94903 0.95801 0.97337 1.69906 1.09228 1.36867 1.37363 0.86823 0.78821 0.78865 0.85049 1.20230 1.21218 1.18803 1.22749 0.91987 0.99371 0.96874 1.22735 0.98367 0.94519 0.85983 1.87922 1.30699 1.74375 1.35300 0.91213 0.92360 0.92034 0.92229 0.88897 0.89058 0.89611 0.93347 0.88472 0.89898 0.92623 0.94547 0.96079 0.92524 0.89576 0.93764 0.88425 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.56 37.16 0.32 -1.19 16 2 C 0.09 0.96 3.76 -26.44 -0.10 0.86 16 3 H 0.10 1.07 7.68 -51.92 -0.40 0.67 16 4 O -0.37 -4.67 11.20 -35.23 -0.39 -5.06 16 5 C 0.05 0.51 7.68 38.27 0.29 0.80 16 6 C -0.17 -1.92 5.98 -24.93 -0.15 -2.07 16 7 C 0.09 1.06 0.96 -89.90 -0.09 0.97 16 8 C 0.03 0.36 3.77 -3.97 -0.01 0.35 16 9 N -0.54 -6.50 4.20 -234.60 -0.99 -7.48 16 10 C 0.06 0.79 4.33 -3.82 -0.02 0.78 16 11 C 0.02 0.34 2.12 -93.40 -0.20 0.14 16 12 H 0.10 1.73 6.36 -51.93 -0.33 1.40 16 13 C 0.25 5.06 13.64 -20.76 -0.28 4.78 16 14 N -0.47 -10.35 18.54 42.15 0.78 -9.56 16 15 C 0.00 -0.10 3.49 -27.88 -0.10 -0.20 16 16 C -0.53 -14.05 9.15 -34.44 -0.32 -14.37 16 17 H 0.07 2.18 7.84 -52.49 -0.41 1.76 16 18 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 19 N -0.90 -26.84 13.96 55.43 0.77 -26.06 16 20 Si 0.88 20.40 27.47 -169.99 -4.67 15.73 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 24 C 0.02 0.18 5.63 -3.71 -0.02 0.16 16 25 C 0.06 0.56 6.73 37.21 0.25 0.81 16 26 O -0.36 -3.91 8.47 -35.23 -0.30 -4.21 16 27 H 0.07 0.65 7.85 -51.93 -0.41 0.24 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.63 7.90 -51.92 -0.41 0.22 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.09 1.22 7.77 -51.93 -0.40 0.81 16 33 H 0.09 0.95 6.21 -51.93 -0.32 0.63 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 1.23 6.25 -51.93 -0.32 0.90 16 36 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 37 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 38 H 0.04 0.72 7.20 -51.93 -0.37 0.34 16 39 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.09 0.78 8.08 -51.93 -0.42 0.36 16 42 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.59 6.40 -51.93 -0.33 0.26 16 LS Contribution 346.29 15.07 5.22 5.22 Total: -1.00 -31.32 346.29 -7.16 -38.48 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.07 Total: -0.78 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -0.52 Total: -6.27 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.57 Total: -43.11 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -0.69 Total: -9.27 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.67 Total: 15.73 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.32 -7.16 -38.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369398467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.628 kcal (2) G-P(sol) polarization free energy of solvation -31.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds