Wall clock time and date at job start Tue Mar 31 2020 06:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 110.04287 * 2 1 4 4 O 1.43893 * 109.90879 * 238.82824 * 2 1 3 5 5 C 1.44427 * 106.99973 * 266.98556 * 4 2 1 6 6 C 1.55102 * 103.55337 * 320.26679 * 5 4 2 7 7 C 1.53570 * 109.91119 * 121.17639 * 2 1 3 8 8 C 1.52477 * 110.46637 * 235.67297 * 7 2 1 9 9 N 1.47125 * 109.31144 * 178.10865 * 8 7 2 10 10 C 1.46897 * 110.99846 * 178.71559 * 9 8 7 11 11 C 1.53004 * 109.47056 * 293.91557 * 10 9 8 12 12 H 1.09003 * 109.46704 * 56.06015 * 11 10 9 13 13 C 1.47195 * 109.47278 * 296.05570 * 11 10 9 14 14 N 6.30372 * 147.45921 * 122.85456 * 2 1 3 15 15 C 1.53008 * 109.47066 * 176.05762 * 11 10 9 16 16 C 1.50698 * 109.46792 * 185.00230 * 15 11 10 17 17 H 1.07999 * 120.00223 * 359.97438 * 16 15 11 18 18 C 1.37876 * 119.99679 * 179.97438 * 16 15 11 19 19 N 1.31518 * 119.99829 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00200 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47202 * 89.99541 * 20 18 16 22 22 H 1.48503 * 109.47238 * 209.99884 * 20 18 16 23 23 H 1.48507 * 109.47216 * 329.99868 * 20 18 16 24 24 C 1.47027 * 110.67513 * 302.43489 * 9 8 7 25 25 C 1.53095 * 109.37371 * 59.11158 * 24 9 8 26 26 O 1.42315 * 110.57561 * 358.72050 * 7 2 1 27 27 H 1.09000 * 109.47614 * 298.81825 * 1 2 3 28 28 H 1.09004 * 109.47425 * 58.82595 * 1 2 3 29 29 H 1.09008 * 109.46773 * 178.81930 * 1 2 3 30 30 H 1.08999 * 110.60198 * 78.78239 * 5 4 2 31 31 H 1.08994 * 110.60653 * 201.75099 * 5 4 2 32 32 H 1.08996 * 110.93295 * 278.45008 * 6 5 4 33 33 H 1.09003 * 110.93124 * 154.78074 * 6 5 4 34 34 H 1.09005 * 109.49703 * 58.15471 * 8 7 2 35 35 H 1.09004 * 109.52559 * 298.08166 * 8 7 2 36 36 H 1.09001 * 109.47345 * 173.92043 * 10 9 8 37 37 H 1.09000 * 109.47553 * 53.91646 * 10 9 8 38 38 H 1.08997 * 109.47061 * 305.00350 * 15 11 10 39 39 H 1.09002 * 109.46957 * 65.00321 * 15 11 10 40 40 H 0.97000 * 119.99722 * 180.02562 * 19 18 16 41 41 H 1.08995 * 109.48565 * 179.08095 * 24 9 8 42 42 H 1.08999 * 109.48329 * 299.13665 * 24 9 8 43 43 H 1.09004 * 109.51492 * 182.71836 * 25 24 9 44 44 H 1.08997 * 109.56614 * 62.57044 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9036 1.0241 0.0000 4 8 2.0199 -0.7003 -1.1576 5 6 2.2320 -2.0731 -0.7622 6 6 2.8295 -1.9524 0.6640 7 6 2.0530 -0.7475 1.2354 8 6 2.9919 0.1444 2.0402 9 7 3.4415 -0.5795 3.2396 10 6 4.3742 0.2366 4.0283 11 6 5.6619 0.4534 3.2309 12 1 5.4214 0.9034 2.2677 13 6 6.3292 -0.8407 3.0151 14 7 6.8440 -1.8395 2.8484 15 6 6.5937 1.3839 4.0101 16 6 7.8072 1.6958 3.1728 17 1 7.9044 1.2724 2.1840 18 6 8.7934 2.5217 3.6690 19 7 9.8527 2.7935 2.9385 20 14 8.6256 3.2536 5.3794 21 1 9.2399 2.3363 6.3728 22 1 9.3161 4.5675 5.4256 23 1 7.1874 3.4387 5.6998 24 6 2.2916 -1.0002 4.0535 25 6 1.3816 -1.9043 3.2179 26 8 0.9709 -1.2003 2.0412 27 1 -0.3634 0.4954 0.9004 28 1 -0.3634 0.5320 -0.8793 29 1 -0.3633 -1.0275 -0.0212 30 1 1.2869 -2.6155 -0.7376 31 1 2.9382 -2.5610 -1.4339 32 1 3.8982 -1.7425 0.6220 33 1 2.6336 -2.8532 1.2458 34 1 2.4658 1.0513 2.3384 35 1 3.8554 0.4090 1.4299 36 1 4.6067 -0.2767 4.9613 37 1 3.9165 1.2010 4.2485 38 1 6.0682 2.3090 4.2471 39 1 6.9051 0.8961 4.9337 40 1 10.5466 3.3743 3.2877 41 1 2.6453 -1.5477 4.9270 42 1 1.7337 -0.1212 4.3763 43 1 0.5039 -2.1785 3.8032 44 1 1.9248 -2.8051 2.9323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369398467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:02 Heat of formation + Delta-G solvation = -79.802483 kcal Electronic energy + Delta-G solvation = -24900.164301 eV Core-core repulsion = 21430.810456 eV Total energy + Delta-G solvation = -3469.353845 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.86582 -39.44006 -38.27689 -36.54405 -35.35870 -33.64607 -33.31892 -32.21722 -30.27318 -29.38933 -27.53978 -25.50784 -24.39845 -23.35028 -23.20221 -22.00181 -20.46723 -18.92936 -18.46056 -17.90660 -17.55608 -17.23674 -16.38753 -16.25914 -16.06230 -15.51774 -15.35462 -15.14555 -14.93434 -14.77908 -14.58065 -14.35630 -14.00695 -13.80730 -13.65964 -13.34558 -13.16925 -12.96133 -12.91254 -12.76875 -12.63174 -12.53899 -12.29790 -12.05375 -11.87577 -11.80777 -11.70940 -11.57945 -11.32443 -11.20443 -10.74174 -10.67373 -10.53168 -9.31137 -8.24933 -6.30992 1.43154 1.44202 1.55150 2.03798 2.11289 2.40666 2.62009 2.72018 2.91206 3.11566 3.29763 3.48927 3.66513 3.82167 3.99081 4.05016 4.14003 4.20060 4.27924 4.30889 4.37290 4.41855 4.46642 4.59828 4.64155 4.67491 4.71226 4.77204 4.83475 4.85577 4.89437 4.97718 5.07644 5.08618 5.12069 5.22454 5.39956 5.41396 5.62380 5.79894 5.93669 6.01560 6.25254 6.25765 6.76512 6.89465 7.33594 8.92109 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.004077 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.026707 B = 6866.570922 C = 7161.837253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.081 3.919 3 H 0.107 0.893 4 O -0.389 6.389 5 C 0.047 3.953 6 C -0.164 4.164 7 C 0.101 3.899 8 C 0.032 3.968 9 N -0.550 5.550 10 C 0.070 3.930 11 C 0.024 3.976 12 H 0.108 0.892 13 C 0.263 3.737 14 N -0.512 5.512 15 C -0.002 4.002 16 C -0.531 4.531 17 H 0.026 0.974 18 C 0.004 3.996 19 N -0.955 5.955 20 Si 0.948 3.052 21 H -0.276 1.276 22 H -0.290 1.290 23 H -0.222 1.222 24 C 0.020 3.980 25 C 0.058 3.942 26 O -0.367 6.367 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.028 0.972 40 H 0.265 0.735 41 H 0.096 0.904 42 H 0.055 0.945 43 H 0.124 0.876 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.308 -5.497 1.862 24.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.023 3.977 3 H 0.125 0.875 4 O -0.309 6.309 5 C -0.029 4.029 6 C -0.202 4.202 7 C 0.060 3.940 8 C -0.096 4.096 9 N -0.275 5.275 10 C -0.058 4.058 11 C 0.002 3.998 12 H 0.125 0.875 13 C -0.053 4.053 14 N -0.189 5.189 15 C -0.041 4.041 16 C -0.569 4.569 17 H 0.045 0.955 18 C -0.193 4.193 19 N -0.595 5.595 20 Si 0.771 3.229 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.144 1.144 24 C -0.108 4.108 25 C -0.018 4.018 26 O -0.285 6.285 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.073 0.927 43 H 0.142 0.858 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.312 -7.224 1.201 24.435 hybrid contribution 0.770 1.166 0.778 1.599 sum -22.542 -6.058 1.979 23.426 Atomic orbital electron populations 1.21873 0.93332 1.02686 1.02470 1.22804 0.96000 0.96369 0.82554 0.87490 1.88950 1.86363 1.21943 1.33640 1.23650 1.00436 0.83750 0.95111 1.23473 1.00228 0.99508 0.97026 1.22236 0.86811 0.93566 0.91348 1.22712 0.98491 0.95564 0.92878 1.62192 1.15978 1.41730 1.07602 1.22172 0.89684 0.98146 0.95840 1.19073 0.93701 0.84619 1.02359 0.87475 1.29328 0.90992 0.93860 0.91163 1.80995 1.11920 1.15077 1.10941 1.19589 0.93415 0.95829 0.95288 1.21380 1.04689 1.28810 1.02065 0.95514 1.26044 0.94385 0.96595 1.02288 1.70095 1.10738 1.38592 1.40080 0.85699 0.81095 0.77369 0.78741 1.20159 1.21627 1.14442 1.22817 0.91171 0.99926 0.96851 1.22901 0.99378 0.93913 0.85615 1.87923 1.30387 1.74470 1.35761 0.90507 0.91905 0.92476 0.90986 0.88445 0.91521 0.89309 0.92148 0.90157 0.88952 0.90192 0.91808 0.95380 0.92661 0.88531 0.92670 0.85811 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.56 71.98 0.62 -1.97 16 2 C 0.08 1.69 3.76 30.78 0.12 1.81 16 3 H 0.11 2.11 7.68 -2.38 -0.02 2.09 16 4 O -0.39 -9.71 11.20 -148.98 -1.67 -11.38 16 5 C 0.05 0.99 7.68 72.70 0.56 1.55 16 6 C -0.16 -3.74 5.98 31.76 0.19 -3.55 16 7 C 0.10 2.10 0.96 -10.33 -0.01 2.09 16 8 C 0.03 0.68 3.77 86.09 0.32 1.01 16 9 N -0.55 -12.01 4.20 -896.13 -3.76 -15.77 16 10 C 0.07 1.62 4.33 86.31 0.37 2.00 16 11 C 0.02 0.80 2.12 -12.60 -0.03 0.78 16 12 H 0.11 3.50 6.36 -2.39 -0.02 3.48 16 13 C 0.26 10.55 13.64 89.44 1.22 11.77 16 14 N -0.51 -22.97 18.54 20.00 0.37 -22.60 16 15 C 0.00 -0.09 3.49 29.85 0.10 0.02 16 16 C -0.53 -28.54 9.15 25.60 0.23 -28.31 16 17 H 0.03 1.64 7.84 -2.91 -0.02 1.61 16 18 C 0.00 0.20 5.47 84.65 0.46 0.66 16 19 N -0.95 -59.06 13.96 21.45 0.30 -58.76 16 20 Si 0.95 40.97 27.47 68.60 1.88 42.85 16 21 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 22 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 23 H -0.22 -8.07 6.54 99.48 0.65 -7.42 16 24 C 0.02 0.32 5.63 86.31 0.49 0.81 16 25 C 0.06 0.90 6.73 72.01 0.48 1.39 16 26 O -0.37 -6.94 8.47 -148.98 -1.26 -8.20 16 27 H 0.08 1.25 7.85 -2.39 -0.02 1.23 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.06 7.90 -2.38 -0.02 1.04 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.07 1.84 7.77 -2.39 -0.02 1.82 16 33 H 0.09 1.93 6.21 -2.39 -0.01 1.91 16 34 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.08 1.99 6.25 -2.39 -0.01 1.98 16 36 H 0.09 2.01 8.04 -2.39 -0.02 1.99 16 37 H 0.08 1.52 8.12 -2.39 -0.02 1.50 16 38 H 0.06 2.23 7.20 -2.39 -0.02 2.22 16 39 H 0.03 1.09 7.57 -2.39 -0.02 1.07 16 40 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 41 H 0.10 1.39 8.08 -2.39 -0.02 1.37 16 42 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.05 0.93 6.40 -2.39 -0.02 0.91 16 Total: -1.00 -70.00 346.29 1.92 -68.07 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.93 Total: 15.75 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 5.13 Total: -9.96 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -3.09 Total: -97.13 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -2.93 Total: -19.58 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 1.88 Total: 42.85 kcal Total: -70.00 1.92 -68.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369398467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.728 kcal (2) G-P(sol) polarization free energy of solvation -69.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds