Wall clock time and date at job start Tue Mar 31 2020 06:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.05296 * 2 1 4 4 O 1.43892 * 109.91167 * 238.81384 * 2 1 3 5 5 C 1.44436 * 107.00225 * 214.25960 * 4 2 1 6 6 C 1.55106 * 103.55099 * 39.74270 * 5 4 2 7 7 C 1.53567 * 109.91362 * 121.17684 * 2 1 3 8 8 C 1.52481 * 110.46209 * 3.07422 * 7 2 1 9 9 N 1.47130 * 109.29502 * 181.82147 * 8 7 2 10 10 C 1.46904 * 110.99689 * 181.32255 * 9 8 7 11 11 C 1.53003 * 109.46886 * 66.04348 * 10 9 8 12 12 H 1.09002 * 109.47153 * 303.95780 * 11 10 9 13 13 C 1.47194 * 109.47502 * 63.96281 * 11 10 9 14 14 N 6.30185 * 89.14413 * 153.19045 * 2 1 3 15 15 C 1.53007 * 109.46887 * 183.96138 * 11 10 9 16 16 C 1.50694 * 109.46936 * 175.00081 * 15 11 10 17 17 H 1.08004 * 120.00188 * 359.97438 * 16 15 11 18 18 C 1.37879 * 119.99888 * 180.02562 * 16 15 11 19 19 N 1.31513 * 120.00113 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00223 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47040 * 89.99611 * 20 18 16 22 22 H 1.48494 * 109.47666 * 210.00081 * 20 18 16 23 23 H 1.48505 * 109.47230 * 330.00060 * 20 18 16 24 24 C 1.47142 * 110.71959 * 57.59335 * 9 8 7 25 25 C 1.53105 * 109.30188 * 300.95854 * 24 9 8 26 26 O 1.42312 * 110.59247 * 240.05287 * 7 2 1 27 27 H 1.08999 * 109.47059 * 298.82408 * 1 2 3 28 28 H 1.08996 * 109.47133 * 58.82121 * 1 2 3 29 29 H 1.08999 * 109.46967 * 178.82683 * 1 2 3 30 30 H 1.08998 * 110.60575 * 281.23072 * 5 4 2 31 31 H 1.08990 * 110.60586 * 158.25663 * 5 4 2 32 32 H 1.09009 * 110.93050 * 205.22025 * 6 5 4 33 33 H 1.09003 * 110.96508 * 81.56990 * 6 5 4 34 34 H 1.08998 * 109.50168 * 301.77029 * 8 7 2 35 35 H 1.08999 * 109.49964 * 61.86930 * 8 7 2 36 36 H 1.08999 * 109.46576 * 186.04027 * 10 9 8 37 37 H 1.08994 * 109.47443 * 306.04051 * 10 9 8 38 38 H 1.08995 * 109.46730 * 295.00246 * 15 11 10 39 39 H 1.09004 * 109.46837 * 54.99583 * 15 11 10 40 40 H 0.97001 * 120.00611 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.56081 * 180.98391 * 24 9 8 42 42 H 1.08995 * 109.47599 * 60.88312 * 24 9 8 43 43 H 1.09008 * 109.51571 * 297.35702 * 25 24 9 44 44 H 1.08999 * 109.51325 * 177.25713 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 8 2.0200 -0.7006 -1.1574 5 6 3.2372 -1.3700 -0.7619 6 6 2.9191 -1.8899 0.6644 7 6 2.0530 -0.7475 1.2353 8 6 0.8933 -1.3240 2.0402 9 7 1.4198 -1.9958 3.2386 10 6 0.3338 -2.5933 4.0270 11 6 -0.3120 -3.7272 3.2281 12 1 -0.6525 -3.3454 2.2656 13 6 0.6744 -4.7977 3.0102 14 7 1.4359 -5.6238 2.8420 15 6 -1.5055 -4.2842 4.0069 16 6 -2.2151 -5.3158 3.1683 17 1 -1.8516 -5.5503 2.1787 18 6 -3.3292 -5.9594 3.6640 19 7 -3.7721 -5.6735 4.8688 20 14 -4.2093 -7.2376 2.6243 21 1 -3.6247 -8.5772 2.8869 22 1 -5.6528 -7.2505 2.9726 23 1 -4.0501 -6.9013 1.1866 24 6 2.2104 -1.0607 4.0545 25 6 3.3702 -0.5145 3.2175 26 8 2.8488 0.1138 2.0417 27 1 -0.3633 0.4955 0.9003 28 1 -0.3633 0.5320 -0.8792 29 1 -0.3633 -1.0274 -0.0210 30 1 4.0706 -0.6679 -0.7372 31 1 3.4537 -2.2007 -1.4334 32 1 3.8324 -2.0143 1.2463 33 1 2.3559 -2.8223 0.6231 34 1 0.2224 -0.5188 2.3395 35 1 0.3487 -2.0438 1.4291 36 1 0.7370 -2.9893 4.9590 37 1 -0.4149 -1.8330 4.2490 38 1 -1.1538 -4.7455 4.9296 39 1 -2.1940 -3.4735 4.2454 40 1 -4.5561 -6.1260 5.2175 41 1 2.6052 -1.5814 4.9269 42 1 1.5761 -0.2359 4.3792 43 1 4.0297 -1.3336 2.9307 44 1 3.9295 0.2154 3.8028 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369398468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:05 Heat of formation + Delta-G solvation = -59.251240 kcal Electronic energy + Delta-G solvation = -24992.223254 eV Core-core repulsion = 21523.760577 eV Total energy + Delta-G solvation = -3468.462677 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.00689 -38.33609 -36.99667 -35.22837 -33.58361 -32.98216 -31.76371 -31.38920 -29.11867 -27.32189 -25.60548 -25.24696 -23.30229 -22.29973 -21.72080 -21.40394 -19.26464 -17.50380 -16.81782 -16.60456 -16.17799 -15.96185 -15.51957 -15.22328 -15.04289 -14.65015 -14.37452 -14.04370 -13.80327 -13.52220 -13.09831 -12.80055 -12.55369 -12.42828 -12.33722 -12.10222 -11.96440 -11.77205 -11.49829 -11.39290 -11.25721 -11.22262 -11.07869 -11.01301 -10.69272 -10.59190 -10.43898 -10.18413 -9.80651 -9.75539 -9.54513 -9.24363 -8.48941 -8.33289 -6.12765 -4.16136 3.28108 3.34818 3.37954 3.41573 3.63359 3.69281 3.75938 3.82489 4.37084 4.40272 4.58188 4.70674 4.80614 4.86218 4.96813 5.01367 5.07907 5.14707 5.24941 5.25582 5.31492 5.38025 5.45982 5.54115 5.57289 5.61514 5.63513 5.68254 5.77169 5.86972 5.93016 5.95323 6.01593 6.11357 6.28211 6.42315 6.64825 6.94447 6.97980 7.10591 7.37574 7.47538 7.82137 8.19163 8.53105 8.88394 9.49712 10.98090 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018624 B = 0.004274 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.097277 B = 6549.392415 C = 7035.837911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.090 3.910 3 H 0.080 0.920 4 O -0.370 6.370 5 C 0.047 3.953 6 C -0.167 4.167 7 C 0.093 3.907 8 C 0.031 3.969 9 N -0.539 5.539 10 C 0.063 3.937 11 C 0.010 3.990 12 H 0.098 0.902 13 C 0.255 3.745 14 N -0.477 5.477 15 C 0.032 3.968 16 C -0.527 4.527 17 H 0.057 0.943 18 C 0.064 3.936 19 N -0.891 5.891 20 Si 0.891 3.109 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.018 3.982 25 C 0.062 3.938 26 O -0.371 6.371 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.026 0.974 39 H 0.037 0.963 40 H 0.263 0.737 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.061 0.939 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.556 14.717 -4.776 19.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.032 3.968 3 H 0.098 0.902 4 O -0.290 6.290 5 C -0.029 4.029 6 C -0.205 4.205 7 C 0.053 3.947 8 C -0.097 4.097 9 N -0.264 5.264 10 C -0.066 4.066 11 C -0.012 4.012 12 H 0.116 0.884 13 C -0.062 4.062 14 N -0.154 5.154 15 C -0.007 4.007 16 C -0.565 4.565 17 H 0.075 0.925 18 C -0.139 4.139 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.110 4.110 25 C -0.014 4.014 26 O -0.290 6.290 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.812 13.240 -5.306 19.173 hybrid contribution -1.289 -0.145 0.261 1.323 sum 11.523 13.094 -5.045 18.158 Atomic orbital electron populations 1.22054 0.92719 1.03728 1.02769 1.22498 0.95313 0.95995 0.83038 0.90246 1.88947 1.40057 1.67569 1.32390 1.23567 0.87584 0.96271 0.95504 1.23556 1.01305 0.99323 0.96276 1.22405 0.90971 0.90017 0.91293 1.22894 0.95719 0.98215 0.92854 1.62333 1.24350 1.32359 1.07312 1.22272 0.91942 0.95895 0.96464 1.19243 0.91974 0.88209 1.01765 0.88389 1.28821 0.92096 0.93197 0.92049 1.80986 1.12831 1.11664 1.09944 1.19170 0.89511 0.96722 0.95261 1.21118 1.11674 1.21978 1.01693 0.92518 1.24941 0.97081 0.96859 0.94988 1.69932 1.24527 1.42389 1.16152 0.86597 0.78800 0.81968 0.80759 1.20625 1.21076 1.19707 1.22766 0.96124 0.95286 0.96854 1.22736 0.95033 0.97864 0.85814 1.87876 1.67923 1.37611 1.35593 0.90670 0.91511 0.90936 0.92149 0.88886 0.89591 0.89091 0.92979 0.88444 0.89936 0.92622 0.95557 0.94460 0.92769 0.89504 0.93739 0.92054 0.88400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 8.39 37.16 0.31 -1.28 16 2 C 0.09 1.03 3.88 -26.44 -0.10 0.93 16 3 H 0.08 0.89 7.96 -51.93 -0.41 0.48 16 4 O -0.37 -4.77 11.20 -35.23 -0.39 -5.16 16 5 C 0.05 0.52 7.73 38.27 0.30 0.82 16 6 C -0.17 -1.98 5.98 -24.93 -0.15 -2.13 16 7 C 0.09 1.10 0.99 -89.91 -0.09 1.01 16 8 C 0.03 0.38 2.80 -3.96 -0.01 0.37 16 9 N -0.54 -6.92 4.20 -234.49 -0.98 -7.91 16 10 C 0.06 0.89 4.33 -3.82 -0.02 0.88 16 11 C 0.01 0.18 2.12 -93.40 -0.20 -0.02 16 12 H 0.10 1.66 6.35 -51.93 -0.33 1.33 16 13 C 0.26 5.19 13.64 -20.76 -0.28 4.91 16 14 N -0.48 -10.54 18.54 42.15 0.78 -9.76 16 15 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 16 C -0.53 -13.81 8.60 -34.44 -0.30 -14.10 16 17 H 0.06 1.49 7.59 -52.48 -0.40 1.09 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -25.21 13.29 55.43 0.74 -24.48 16 20 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 C 0.02 0.19 5.64 -3.64 -0.02 0.17 16 25 C 0.06 0.62 6.73 37.21 0.25 0.87 16 26 O -0.37 -4.37 10.22 -35.23 -0.36 -4.73 16 27 H 0.07 0.69 6.78 -51.93 -0.35 0.34 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.79 6.75 -51.93 -0.35 0.44 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.09 0.99 6.21 -51.92 -0.32 0.67 16 33 H 0.09 1.23 7.78 -51.93 -0.40 0.83 16 34 H 0.05 0.60 6.59 -51.93 -0.34 0.26 16 35 H 0.10 1.27 5.05 -51.93 -0.26 1.01 16 36 H 0.08 1.17 8.04 -51.93 -0.42 0.76 16 37 H 0.06 0.74 8.12 -51.93 -0.42 0.31 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 42 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.63 6.39 -51.92 -0.33 0.30 16 44 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 346.02 15.07 5.21 5.21 Total: -1.00 -30.26 346.02 -7.42 -37.68 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -6.86 Total: -1.61 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -0.53 Total: -5.37 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.53 Total: -42.14 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.75 Total: -9.89 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.26 -7.42 -37.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369398468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.576 kcal (2) G-P(sol) polarization free energy of solvation -30.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds