Wall clock time and date at job start Tue Mar 31 2020 06:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.05296 * 2 1 4 4 O 1.43892 * 109.91167 * 238.81384 * 2 1 3 5 5 C 1.44436 * 107.00225 * 214.25960 * 4 2 1 6 6 C 1.55106 * 103.55099 * 39.74270 * 5 4 2 7 7 C 1.53567 * 109.91362 * 121.17684 * 2 1 3 8 8 C 1.52481 * 110.46209 * 3.07422 * 7 2 1 9 9 N 1.47130 * 109.29502 * 181.82147 * 8 7 2 10 10 C 1.46904 * 110.99689 * 181.32255 * 9 8 7 11 11 C 1.53003 * 109.46886 * 66.04348 * 10 9 8 12 12 H 1.09002 * 109.47153 * 303.95780 * 11 10 9 13 13 C 1.47194 * 109.47502 * 63.96281 * 11 10 9 14 14 N 6.30185 * 89.14413 * 153.19045 * 2 1 3 15 15 C 1.53007 * 109.46887 * 183.96138 * 11 10 9 16 16 C 1.50694 * 109.46936 * 175.00081 * 15 11 10 17 17 H 1.08004 * 120.00188 * 359.97438 * 16 15 11 18 18 C 1.37879 * 119.99888 * 180.02562 * 16 15 11 19 19 N 1.31513 * 120.00113 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00223 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47040 * 89.99611 * 20 18 16 22 22 H 1.48494 * 109.47666 * 210.00081 * 20 18 16 23 23 H 1.48505 * 109.47230 * 330.00060 * 20 18 16 24 24 C 1.47142 * 110.71959 * 57.59335 * 9 8 7 25 25 C 1.53105 * 109.30188 * 300.95854 * 24 9 8 26 26 O 1.42312 * 110.59247 * 240.05287 * 7 2 1 27 27 H 1.08999 * 109.47059 * 298.82408 * 1 2 3 28 28 H 1.08996 * 109.47133 * 58.82121 * 1 2 3 29 29 H 1.08999 * 109.46967 * 178.82683 * 1 2 3 30 30 H 1.08998 * 110.60575 * 281.23072 * 5 4 2 31 31 H 1.08990 * 110.60586 * 158.25663 * 5 4 2 32 32 H 1.09009 * 110.93050 * 205.22025 * 6 5 4 33 33 H 1.09003 * 110.96508 * 81.56990 * 6 5 4 34 34 H 1.08998 * 109.50168 * 301.77029 * 8 7 2 35 35 H 1.08999 * 109.49964 * 61.86930 * 8 7 2 36 36 H 1.08999 * 109.46576 * 186.04027 * 10 9 8 37 37 H 1.08994 * 109.47443 * 306.04051 * 10 9 8 38 38 H 1.08995 * 109.46730 * 295.00246 * 15 11 10 39 39 H 1.09004 * 109.46837 * 54.99583 * 15 11 10 40 40 H 0.97001 * 120.00611 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.56081 * 180.98391 * 24 9 8 42 42 H 1.08995 * 109.47599 * 60.88312 * 24 9 8 43 43 H 1.09008 * 109.51571 * 297.35702 * 25 24 9 44 44 H 1.08999 * 109.51325 * 177.25713 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 8 2.0200 -0.7006 -1.1574 5 6 3.2372 -1.3700 -0.7619 6 6 2.9191 -1.8899 0.6644 7 6 2.0530 -0.7475 1.2353 8 6 0.8933 -1.3240 2.0402 9 7 1.4198 -1.9958 3.2386 10 6 0.3338 -2.5933 4.0270 11 6 -0.3120 -3.7272 3.2281 12 1 -0.6525 -3.3454 2.2656 13 6 0.6744 -4.7977 3.0102 14 7 1.4359 -5.6238 2.8420 15 6 -1.5055 -4.2842 4.0069 16 6 -2.2151 -5.3158 3.1683 17 1 -1.8516 -5.5503 2.1787 18 6 -3.3292 -5.9594 3.6640 19 7 -3.7721 -5.6735 4.8688 20 14 -4.2093 -7.2376 2.6243 21 1 -3.6247 -8.5772 2.8869 22 1 -5.6528 -7.2505 2.9726 23 1 -4.0501 -6.9013 1.1866 24 6 2.2104 -1.0607 4.0545 25 6 3.3702 -0.5145 3.2175 26 8 2.8488 0.1138 2.0417 27 1 -0.3633 0.4955 0.9003 28 1 -0.3633 0.5320 -0.8792 29 1 -0.3633 -1.0274 -0.0210 30 1 4.0706 -0.6679 -0.7372 31 1 3.4537 -2.2007 -1.4334 32 1 3.8324 -2.0143 1.2463 33 1 2.3559 -2.8223 0.6231 34 1 0.2224 -0.5188 2.3395 35 1 0.3487 -2.0438 1.4291 36 1 0.7370 -2.9893 4.9590 37 1 -0.4149 -1.8330 4.2490 38 1 -1.1538 -4.7455 4.9296 39 1 -2.1940 -3.4735 4.2454 40 1 -4.5561 -6.1260 5.2175 41 1 2.6052 -1.5814 4.9269 42 1 1.5761 -0.2359 4.3792 43 1 4.0297 -1.3336 2.9307 44 1 3.9295 0.2154 3.8028 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369398468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:04 Heat of formation + Delta-G solvation = -79.056195 kcal Electronic energy + Delta-G solvation = -24993.082061 eV Core-core repulsion = 21523.760577 eV Total energy + Delta-G solvation = -3469.321484 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.91803 -39.37043 -38.27518 -36.55086 -35.40626 -33.87055 -33.43844 -32.27783 -30.18832 -28.67133 -26.95367 -26.12310 -24.53310 -23.55288 -23.19654 -22.32375 -20.16130 -18.68757 -18.39973 -17.96715 -17.39277 -16.88111 -16.56912 -16.42696 -16.14351 -15.99835 -15.54295 -14.98385 -14.91439 -14.78570 -14.47465 -14.13720 -13.92365 -13.70783 -13.51004 -13.30206 -13.21827 -13.03566 -12.91372 -12.80990 -12.51755 -12.39884 -12.33124 -12.27044 -12.18717 -11.90929 -11.67280 -11.45381 -11.33278 -11.12166 -10.69974 -10.57555 -10.53995 -9.30872 -8.20157 -6.28139 1.39436 1.42048 1.50762 2.04985 2.12470 2.40699 2.56482 2.72707 2.87196 3.15603 3.32572 3.48643 3.66361 3.82351 3.98517 4.05885 4.11663 4.18278 4.25280 4.29892 4.36255 4.41743 4.53280 4.58508 4.63945 4.67978 4.71512 4.79171 4.82544 4.83936 4.91779 4.96314 5.02019 5.08225 5.10778 5.30108 5.45444 5.59819 5.77661 5.77986 5.92804 5.99945 6.20184 6.23734 6.82207 6.91993 7.40565 8.90670 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018624 B = 0.004274 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.097277 B = 6549.392415 C = 7035.837911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.088 3.912 3 H 0.084 0.916 4 O -0.389 6.389 5 C 0.047 3.953 6 C -0.165 4.165 7 C 0.097 3.903 8 C 0.032 3.968 9 N -0.549 5.549 10 C 0.073 3.927 11 C 0.021 3.979 12 H 0.111 0.889 13 C 0.265 3.735 14 N -0.510 5.510 15 C 0.039 3.961 16 C -0.538 4.538 17 H 0.052 0.948 18 C 0.014 3.986 19 N -0.922 5.922 20 Si 0.945 3.055 21 H -0.284 1.284 22 H -0.278 1.278 23 H -0.265 1.265 24 C 0.018 3.982 25 C 0.061 3.939 26 O -0.378 6.378 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.003 0.997 39 H 0.036 0.964 40 H 0.264 0.736 41 H 0.095 0.905 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.976 15.958 -5.085 20.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.030 3.970 3 H 0.101 0.899 4 O -0.309 6.309 5 C -0.029 4.029 6 C -0.203 4.203 7 C 0.057 3.943 8 C -0.096 4.096 9 N -0.274 5.274 10 C -0.056 4.056 11 C -0.001 4.001 12 H 0.129 0.871 13 C -0.051 4.051 14 N -0.187 5.187 15 C 0.000 4.000 16 C -0.576 4.576 17 H 0.070 0.930 18 C -0.185 4.185 19 N -0.562 5.562 20 Si 0.771 3.229 21 H -0.210 1.210 22 H -0.203 1.203 23 H -0.189 1.189 24 C -0.110 4.110 25 C -0.015 4.015 26 O -0.297 6.297 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.021 0.979 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.114 0.886 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 13.243 14.491 -5.622 20.420 hybrid contribution -1.376 -0.520 0.365 1.516 sum 11.867 13.971 -5.257 19.069 Atomic orbital electron populations 1.22058 0.91975 1.03364 1.03696 1.22591 0.95966 0.95935 0.82550 0.89861 1.88926 1.40799 1.67886 1.33256 1.23663 0.87414 0.96751 0.95082 1.23487 1.01171 0.98548 0.97090 1.22340 0.90744 0.89909 0.91351 1.22876 0.96049 0.98116 0.92521 1.62262 1.23893 1.33612 1.07682 1.22090 0.92759 0.94936 0.95772 1.19172 0.90109 0.88523 1.02276 0.87130 1.29274 0.91808 0.92958 0.91068 1.80982 1.14077 1.12545 1.11124 1.18982 0.90882 0.95823 0.94291 1.21519 1.11766 1.22516 1.01839 0.92971 1.25663 0.98073 0.98733 0.96009 1.70018 1.25133 1.43600 1.17445 0.85744 0.78023 0.79425 0.79710 1.21038 1.20316 1.18933 1.22848 0.96102 0.95104 0.96932 1.22894 0.94738 0.98500 0.85381 1.87874 1.67881 1.37793 1.36119 0.89491 0.90881 0.91882 0.90949 0.88052 0.89332 0.91178 0.92023 0.89606 0.89849 0.91075 0.97888 0.94624 0.92694 0.88629 0.92939 0.92477 0.85785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.39 71.98 0.60 -2.34 16 2 C 0.09 1.89 3.88 30.78 0.12 2.01 16 3 H 0.08 1.73 7.96 -2.39 -0.02 1.71 16 4 O -0.39 -9.61 11.20 -148.98 -1.67 -11.28 16 5 C 0.05 0.98 7.73 72.70 0.56 1.54 16 6 C -0.17 -3.79 5.98 31.76 0.19 -3.60 16 7 C 0.10 2.13 0.99 -10.33 -0.01 2.12 16 8 C 0.03 0.73 2.80 86.09 0.24 0.97 16 9 N -0.55 -13.18 4.20 -895.79 -3.76 -16.94 16 10 C 0.07 1.97 4.33 86.30 0.37 2.34 16 11 C 0.02 0.74 2.12 -12.60 -0.03 0.71 16 12 H 0.11 3.64 6.35 -2.39 -0.02 3.63 16 13 C 0.27 10.70 13.64 89.44 1.22 11.92 16 14 N -0.51 -22.49 18.54 20.00 0.37 -22.12 16 15 C 0.04 1.76 4.42 29.85 0.13 1.89 16 16 C -0.54 -28.18 8.60 25.60 0.22 -27.96 16 17 H 0.05 2.72 7.59 -2.91 -0.02 2.70 16 18 C 0.01 0.78 5.46 84.66 0.46 1.24 16 19 N -0.92 -52.31 13.29 21.45 0.28 -52.02 16 20 Si 0.95 43.14 29.54 68.60 2.03 45.16 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 24 C 0.02 0.34 5.64 86.29 0.49 0.82 16 25 C 0.06 1.06 6.73 72.02 0.48 1.55 16 26 O -0.38 -8.03 10.22 -148.98 -1.52 -9.55 16 27 H 0.09 1.43 6.78 -2.39 -0.02 1.41 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 1.32 6.75 -2.39 -0.02 1.30 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.09 1.95 6.21 -2.38 -0.01 1.93 16 33 H 0.07 1.90 7.78 -2.39 -0.02 1.88 16 34 H 0.06 1.29 6.59 -2.39 -0.02 1.27 16 35 H 0.09 2.15 5.05 -2.39 -0.01 2.14 16 36 H 0.08 2.25 8.04 -2.39 -0.02 2.23 16 37 H 0.07 1.72 8.12 -2.39 -0.02 1.70 16 38 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.26 14.25 8.31 -92.71 -0.77 13.47 16 41 H 0.10 1.65 8.09 -2.39 -0.02 1.63 16 42 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.06 1.06 6.39 -2.38 -0.02 1.04 16 44 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -63.56 346.02 1.78 -61.78 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.99 Total: 11.73 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 5.06 Total: -6.77 kcal Atomic # 7 Polarization: -87.97 SS G_CDS: -3.10 Total: -91.08 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -3.19 Total: -20.83 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -63.56 1.78 -61.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369398468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.276 kcal (2) G-P(sol) polarization free energy of solvation -63.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds