Wall clock time and date at job start Tue Mar 31 2020 07:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.51576 * 2 1 4 4 C 1.53092 * 109.52233 * 239.88920 * 2 1 3 5 5 N 1.47014 * 109.38746 * 182.65955 * 4 2 1 6 6 C 1.46898 * 111.00237 * 182.83878 * 5 4 2 7 7 C 1.53001 * 109.47060 * 164.14818 * 6 5 4 8 8 H 1.08994 * 109.47595 * 55.76554 * 7 6 5 9 9 C 1.47202 * 109.46937 * 295.76274 * 7 6 5 10 10 N 5.40524 * 143.46575 * 297.13886 * 2 1 3 11 11 C 1.53003 * 109.46945 * 175.76707 * 7 6 5 12 12 C 1.50700 * 109.47025 * 184.99612 * 11 7 6 13 13 H 1.08006 * 119.99900 * 359.97438 * 12 11 7 14 14 C 1.37882 * 119.99937 * 179.97438 * 12 11 7 15 15 N 1.31509 * 119.99895 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99762 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47299 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46768 * 120.00371 * 16 14 12 19 19 H 1.48497 * 109.46848 * 239.99896 * 16 14 12 20 20 C 1.47134 * 110.68061 * 59.11117 * 5 4 2 21 21 C 1.52456 * 109.30484 * 302.47164 * 20 5 4 22 22 C 1.53993 * 110.22414 * 292.69726 * 21 20 5 23 23 C 1.54601 * 103.88412 * 241.32460 * 22 21 20 24 24 O 1.44468 * 104.82444 * 23.89612 * 23 22 21 25 25 C 1.44560 * 105.36752 * 319.83971 * 24 23 22 26 26 O 1.42394 * 110.90196 * 55.16309 * 21 20 5 27 27 H 1.09000 * 109.46847 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47234 * 299.99884 * 1 2 3 29 29 H 1.08999 * 109.47079 * 59.99902 * 1 2 3 30 30 H 1.09002 * 109.48509 * 302.63085 * 4 2 1 31 31 H 1.09008 * 109.48501 * 62.68114 * 4 2 1 32 32 H 1.08998 * 109.47054 * 284.14510 * 6 5 4 33 33 H 1.08999 * 109.47632 * 44.14693 * 6 5 4 34 34 H 1.08994 * 109.46973 * 304.99500 * 11 7 6 35 35 H 1.08995 * 109.47166 * 65.00061 * 11 7 6 36 36 H 0.97002 * 119.99894 * 180.02562 * 15 14 12 37 37 H 1.08997 * 109.50056 * 62.41683 * 20 5 4 38 38 H 1.09002 * 109.50184 * 182.49196 * 20 5 4 39 39 H 1.09003 * 110.54314 * 359.92434 * 22 21 20 40 40 H 1.09002 * 110.54821 * 122.57606 * 22 21 20 41 41 H 1.09000 * 110.36933 * 142.73586 * 23 22 21 42 42 H 1.08995 * 110.36351 * 265.06211 * 23 22 21 43 43 H 1.09009 * 110.39128 * 281.17792 * 25 24 23 44 44 H 1.09003 * 110.39016 * 158.79848 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0415 -0.7239 -1.2482 5 7 3.5103 -0.7780 -1.2134 6 6 4.0429 -1.4070 -2.4293 7 6 5.5368 -1.0994 -2.5502 8 1 6.0493 -1.4252 -1.6451 9 6 5.7266 0.3496 -2.7270 10 7 5.8731 1.4678 -2.8635 11 6 6.1140 -1.8405 -3.7579 12 6 7.6064 -1.6369 -3.8060 13 1 8.0943 -1.0383 -3.0509 14 6 8.3489 -2.2147 -4.8139 15 7 7.7547 -2.9431 -5.7336 16 14 10.1988 -1.9616 -4.8738 17 1 10.6189 -1.1081 -3.7335 18 1 10.8815 -3.2774 -4.7846 19 1 10.5665 -1.2988 -6.1508 20 6 3.9758 -1.4821 -0.0082 21 6 3.4271 -0.7804 1.2290 22 6 4.0594 0.6164 1.3732 23 6 4.7990 0.5506 2.7292 24 8 5.0527 -0.8553 2.9441 25 6 3.8545 -1.5327 2.5024 26 8 2.0083 -0.6769 1.1671 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6408 -1.7373 -1.2707 31 1 1.7185 -0.1850 -2.1390 32 1 3.8975 -2.4859 -2.3739 33 1 3.5194 -1.0142 -3.3009 34 1 5.8952 -2.9046 -3.6697 35 1 5.6647 -1.4516 -4.6716 36 1 8.2771 -3.3499 -6.4424 37 1 3.6214 -2.5126 -0.0291 38 1 5.0654 -1.4725 0.0207 39 1 4.7633 0.8032 0.5622 40 1 3.2873 1.3856 1.3929 41 1 5.7378 1.1019 2.6764 42 1 4.1688 0.9482 3.5247 43 1 3.0769 -1.4639 3.2633 44 1 4.0708 -2.5761 2.2727 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373795614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:47 Heat of formation + Delta-G solvation = -65.610931 kcal Electronic energy + Delta-G solvation = -24749.394893 eV Core-core repulsion = 21280.656439 eV Total energy + Delta-G solvation = -3468.738454 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.83506 -38.36168 -37.07496 -35.23283 -33.57950 -33.24862 -31.75975 -30.61325 -29.28127 -27.26030 -26.48330 -24.73593 -22.99423 -22.08989 -21.84068 -21.63111 -19.48044 -17.36292 -16.80417 -16.63590 -16.17428 -16.12845 -15.41579 -15.22505 -14.96013 -14.68888 -14.34484 -13.95840 -13.57566 -13.51333 -13.00507 -12.94490 -12.64989 -12.41138 -12.34569 -12.02976 -11.98547 -11.82960 -11.72219 -11.54601 -11.25912 -11.13543 -11.07018 -11.06322 -10.68796 -10.59724 -10.46194 -10.19725 -9.89579 -9.76219 -9.50521 -9.21113 -8.48081 -8.34904 -6.11559 -4.14627 3.27692 3.33087 3.35999 3.40810 3.63542 3.72357 3.80989 3.91477 4.39239 4.41671 4.59128 4.66929 4.72613 4.85741 4.93118 5.03114 5.06814 5.16188 5.23048 5.26928 5.34982 5.40973 5.46785 5.48702 5.55357 5.60695 5.63257 5.69664 5.72730 5.84126 5.88048 5.93309 5.95777 6.05812 6.30434 6.44856 6.51222 6.95292 6.99359 7.12940 7.39490 7.49388 7.83859 8.20897 8.55126 8.90260 9.51196 10.99402 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018281 B = 0.004169 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.297380 B = 6713.954561 C = 7431.792993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.089 3.911 3 H 0.068 0.932 4 C 0.024 3.976 5 N -0.538 5.538 6 C 0.063 3.937 7 C 0.012 3.988 8 H 0.099 0.901 9 C 0.257 3.743 10 N -0.479 5.479 11 C 0.031 3.969 12 C -0.525 4.525 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.284 1.284 20 C 0.034 3.966 21 C 0.092 3.908 22 C -0.170 4.170 23 C 0.046 3.954 24 O -0.368 6.368 25 C 0.061 3.939 26 O -0.369 6.369 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.026 0.974 36 H 0.262 0.738 37 H 0.047 0.953 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.259 2.042 14.481 20.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.031 3.969 3 H 0.086 0.914 4 C -0.104 4.104 5 N -0.262 5.262 6 C -0.066 4.066 7 C -0.010 4.010 8 H 0.117 0.883 9 C -0.060 4.060 10 N -0.156 5.156 11 C -0.007 4.007 12 C -0.563 4.563 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.210 1.210 20 C -0.094 4.094 21 C 0.052 3.948 22 C -0.208 4.208 23 C -0.031 4.031 24 O -0.286 6.286 25 C -0.016 4.016 26 O -0.288 6.288 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.112 0.888 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.756 3.943 14.360 20.273 hybrid contribution 0.689 -0.955 -0.556 1.302 sum -13.067 2.989 13.804 19.241 Atomic orbital electron populations 1.21741 0.92775 1.02955 1.02603 1.22201 0.94537 0.95968 0.84204 0.91382 1.22791 0.88303 1.00182 0.99130 1.62265 1.08053 1.53467 1.02452 1.22275 0.94928 0.97817 0.91556 1.19221 0.94533 0.83314 1.03981 0.88314 1.28836 0.91256 0.94546 0.91373 1.80981 1.10392 1.13555 1.10712 1.19176 0.95988 0.95383 0.90180 1.21169 0.91977 1.31821 1.11381 0.92436 1.24946 0.98681 0.94907 0.95379 1.69944 1.35760 1.33162 1.14178 0.86542 0.85463 0.77998 0.78141 1.19628 1.20830 1.20958 1.22720 1.01985 0.95564 0.89158 1.22434 0.81535 0.95147 0.95686 1.23403 1.01252 0.97267 0.98900 1.23438 1.00693 0.83253 0.95716 1.89206 1.36039 1.18223 1.85162 1.23217 0.87922 0.97063 0.93444 1.87876 1.19682 1.78450 1.42806 0.91812 0.91718 0.90845 0.93761 0.89611 0.92477 0.90062 0.94469 0.95582 0.92843 0.93462 0.88448 0.88855 0.90046 0.88839 0.92295 0.90967 0.88041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.57 37.16 0.36 -0.80 16 2 C 0.09 0.93 3.12 -26.69 -0.08 0.84 16 3 H 0.07 0.76 6.79 -51.93 -0.35 0.41 16 4 C 0.02 0.27 4.89 -3.71 -0.02 0.25 16 5 N -0.54 -7.06 4.12 -234.62 -0.97 -8.03 16 6 C 0.06 0.91 4.34 -3.82 -0.02 0.89 16 7 C 0.01 0.21 2.22 -93.40 -0.21 0.00 16 8 H 0.10 1.72 6.61 -51.93 -0.34 1.38 16 9 C 0.26 5.27 13.65 -20.76 -0.28 4.99 16 10 N -0.48 -10.66 18.54 42.15 0.78 -9.88 16 11 C 0.03 0.72 4.42 -27.88 -0.12 0.59 16 12 C -0.53 -13.91 8.60 -34.44 -0.30 -14.21 16 13 H 0.06 1.53 7.59 -52.48 -0.40 1.13 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -25.39 13.29 55.43 0.74 -24.66 16 16 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C 0.03 0.42 3.81 -3.97 -0.02 0.40 16 21 C 0.09 1.07 1.04 -89.88 -0.09 0.98 16 22 C -0.17 -1.98 5.78 -25.37 -0.15 -2.13 16 23 C 0.05 0.49 7.65 38.00 0.29 0.78 16 24 O -0.37 -4.62 11.65 -35.23 -0.41 -5.03 16 25 C 0.06 0.66 6.92 37.65 0.26 0.92 16 26 O -0.37 -4.30 9.89 -35.23 -0.35 -4.65 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.91 8.03 -51.92 -0.42 0.49 16 32 H 0.06 0.77 8.04 -51.93 -0.42 0.36 16 33 H 0.08 1.17 7.92 -51.93 -0.41 0.76 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.05 0.56 8.11 -51.93 -0.42 0.14 16 38 H 0.10 1.29 6.61 -51.93 -0.34 0.95 16 39 H 0.09 1.27 7.65 -51.93 -0.40 0.87 16 40 H 0.08 0.91 6.85 -51.93 -0.36 0.55 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.72 8.07 -51.92 -0.42 0.31 16 44 H 0.10 0.98 7.84 -51.93 -0.41 0.57 16 LS Contribution 353.38 15.07 5.33 5.33 Total: -1.00 -30.34 353.38 -7.58 -37.92 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -7.20 Total: -2.40 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -0.47 Total: -4.86 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.55 Total: -42.56 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.76 Total: -9.69 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.34 -7.58 -37.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373795614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.689 kcal (2) G-P(sol) polarization free energy of solvation -30.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds