Wall clock time and date at job start Tue Mar 31 2020 07:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.51576 * 2 1 4 4 C 1.53092 * 109.52233 * 239.88920 * 2 1 3 5 5 N 1.47014 * 109.38746 * 182.65955 * 4 2 1 6 6 C 1.46898 * 111.00237 * 182.83878 * 5 4 2 7 7 C 1.53001 * 109.47060 * 164.14818 * 6 5 4 8 8 H 1.08994 * 109.47595 * 55.76554 * 7 6 5 9 9 C 1.47202 * 109.46937 * 295.76274 * 7 6 5 10 10 N 5.40524 * 143.46575 * 297.13886 * 2 1 3 11 11 C 1.53003 * 109.46945 * 175.76707 * 7 6 5 12 12 C 1.50700 * 109.47025 * 184.99612 * 11 7 6 13 13 H 1.08006 * 119.99900 * 359.97438 * 12 11 7 14 14 C 1.37882 * 119.99937 * 179.97438 * 12 11 7 15 15 N 1.31509 * 119.99895 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99762 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47299 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46768 * 120.00371 * 16 14 12 19 19 H 1.48497 * 109.46848 * 239.99896 * 16 14 12 20 20 C 1.47134 * 110.68061 * 59.11117 * 5 4 2 21 21 C 1.52456 * 109.30484 * 302.47164 * 20 5 4 22 22 C 1.53993 * 110.22414 * 292.69726 * 21 20 5 23 23 C 1.54601 * 103.88412 * 241.32460 * 22 21 20 24 24 O 1.44468 * 104.82444 * 23.89612 * 23 22 21 25 25 C 1.44560 * 105.36752 * 319.83971 * 24 23 22 26 26 O 1.42394 * 110.90196 * 55.16309 * 21 20 5 27 27 H 1.09000 * 109.46847 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47234 * 299.99884 * 1 2 3 29 29 H 1.08999 * 109.47079 * 59.99902 * 1 2 3 30 30 H 1.09002 * 109.48509 * 302.63085 * 4 2 1 31 31 H 1.09008 * 109.48501 * 62.68114 * 4 2 1 32 32 H 1.08998 * 109.47054 * 284.14510 * 6 5 4 33 33 H 1.08999 * 109.47632 * 44.14693 * 6 5 4 34 34 H 1.08994 * 109.46973 * 304.99500 * 11 7 6 35 35 H 1.08995 * 109.47166 * 65.00061 * 11 7 6 36 36 H 0.97002 * 119.99894 * 180.02562 * 15 14 12 37 37 H 1.08997 * 109.50056 * 62.41683 * 20 5 4 38 38 H 1.09002 * 109.50184 * 182.49196 * 20 5 4 39 39 H 1.09003 * 110.54314 * 359.92434 * 22 21 20 40 40 H 1.09002 * 110.54821 * 122.57606 * 22 21 20 41 41 H 1.09000 * 110.36933 * 142.73586 * 23 22 21 42 42 H 1.08995 * 110.36351 * 265.06211 * 23 22 21 43 43 H 1.09009 * 110.39128 * 281.17792 * 25 24 23 44 44 H 1.09003 * 110.39016 * 158.79848 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0415 -0.7239 -1.2482 5 7 3.5103 -0.7780 -1.2134 6 6 4.0429 -1.4070 -2.4293 7 6 5.5368 -1.0994 -2.5502 8 1 6.0493 -1.4252 -1.6451 9 6 5.7266 0.3496 -2.7270 10 7 5.8731 1.4678 -2.8635 11 6 6.1140 -1.8405 -3.7579 12 6 7.6064 -1.6369 -3.8060 13 1 8.0943 -1.0383 -3.0509 14 6 8.3489 -2.2147 -4.8139 15 7 7.7547 -2.9431 -5.7336 16 14 10.1988 -1.9616 -4.8738 17 1 10.6189 -1.1081 -3.7335 18 1 10.8815 -3.2774 -4.7846 19 1 10.5665 -1.2988 -6.1508 20 6 3.9758 -1.4821 -0.0082 21 6 3.4271 -0.7804 1.2290 22 6 4.0594 0.6164 1.3732 23 6 4.7990 0.5506 2.7292 24 8 5.0527 -0.8553 2.9441 25 6 3.8545 -1.5327 2.5024 26 8 2.0083 -0.6769 1.1671 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6408 -1.7373 -1.2707 31 1 1.7185 -0.1850 -2.1390 32 1 3.8975 -2.4859 -2.3739 33 1 3.5194 -1.0142 -3.3009 34 1 5.8952 -2.9046 -3.6697 35 1 5.6647 -1.4516 -4.6716 36 1 8.2771 -3.3499 -6.4424 37 1 3.6214 -2.5126 -0.0291 38 1 5.0654 -1.4725 0.0207 39 1 4.7633 0.8032 0.5622 40 1 3.2873 1.3856 1.3929 41 1 5.7378 1.1019 2.6764 42 1 4.1688 0.9482 3.5247 43 1 3.0769 -1.4639 3.2633 44 1 4.0708 -2.5761 2.2727 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373795614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:47 Heat of formation + Delta-G solvation = -85.213946 kcal Electronic energy + Delta-G solvation = -24750.244943 eV Core-core repulsion = 21280.656439 eV Total energy + Delta-G solvation = -3469.588504 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.74963 -39.35795 -38.38900 -36.58877 -35.41595 -34.10852 -33.43779 -31.55989 -30.21332 -28.76776 -27.39934 -26.12265 -23.98703 -23.61758 -22.93415 -22.74025 -20.37232 -18.59922 -18.42346 -17.92477 -17.32449 -17.12783 -16.62019 -16.28548 -16.15565 -15.91790 -15.59334 -14.93073 -14.87078 -14.67351 -14.40841 -14.15094 -13.91569 -13.71553 -13.43538 -13.27140 -13.18247 -13.04937 -12.82567 -12.78488 -12.66226 -12.56943 -12.42901 -12.34685 -12.16925 -11.89860 -11.69477 -11.52173 -11.34485 -11.14676 -10.77343 -10.56933 -10.52027 -9.36234 -8.20794 -6.28761 1.38198 1.41480 1.51777 2.04563 2.12060 2.40205 2.48220 2.70440 3.02374 3.14924 3.31844 3.51741 3.67540 3.81350 3.88979 4.03021 4.15212 4.16711 4.26442 4.30289 4.35516 4.45018 4.54862 4.63428 4.65669 4.69498 4.74091 4.77926 4.78734 4.81342 4.89637 4.92989 5.03427 5.05823 5.11838 5.29740 5.44931 5.59195 5.66451 5.77214 5.91027 5.97355 6.19756 6.25662 6.81747 6.91539 7.40039 8.90306 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018281 B = 0.004169 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.297380 B = 6713.954561 C = 7431.792993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.087 3.913 3 H 0.059 0.941 4 C 0.024 3.976 5 N -0.548 5.548 6 C 0.073 3.927 7 C 0.023 3.977 8 H 0.110 0.890 9 C 0.266 3.734 10 N -0.510 5.510 11 C 0.039 3.961 12 C -0.538 4.538 13 H 0.052 0.948 14 C 0.014 3.986 15 N -0.922 5.922 16 Si 0.946 3.054 17 H -0.270 1.270 18 H -0.272 1.272 19 H -0.284 1.284 20 C 0.034 3.966 21 C 0.094 3.906 22 C -0.167 4.167 23 C 0.045 3.955 24 O -0.387 6.387 25 C 0.061 3.939 26 O -0.372 6.372 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.035 0.965 35 H 0.003 0.997 36 H 0.264 0.736 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.095 1.809 15.556 21.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.030 3.970 3 H 0.077 0.923 4 C -0.103 4.103 5 N -0.272 5.272 6 C -0.056 4.056 7 C 0.001 3.999 8 H 0.127 0.873 9 C -0.050 4.050 10 N -0.188 5.188 11 C 0.000 4.000 12 C -0.576 4.576 13 H 0.070 0.930 14 C -0.185 4.185 15 N -0.562 5.562 16 Si 0.772 3.228 17 H -0.195 1.195 18 H -0.198 1.198 19 H -0.210 1.210 20 C -0.094 4.094 21 C 0.053 3.947 22 C -0.205 4.205 23 C -0.031 4.031 24 O -0.306 6.306 25 C -0.016 4.016 26 O -0.292 6.292 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.022 0.978 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.115 0.885 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.601 3.713 15.449 21.578 hybrid contribution 0.927 -0.861 -0.885 1.544 sum -13.674 2.852 14.563 20.179 Atomic orbital electron populations 1.21731 0.90761 1.03437 1.03554 1.22309 0.96021 0.95215 0.83490 0.92254 1.22861 0.86783 1.00829 0.99858 1.62183 1.09521 1.53554 1.01986 1.22090 0.92142 0.98785 0.92548 1.19134 0.97270 0.81281 1.02207 0.87257 1.29268 0.90265 0.94970 0.90485 1.80975 1.11582 1.14618 1.11622 1.18986 0.94256 0.95620 0.91153 1.21554 0.93964 1.31147 1.10970 0.92999 1.25673 1.02600 0.94925 0.95315 1.70028 1.37200 1.34176 1.14835 0.85672 0.81011 0.78215 0.77865 1.19487 1.19778 1.21023 1.22720 1.01334 0.96123 0.89251 1.22405 0.81645 0.94971 0.95635 1.23321 1.00872 0.97631 0.98642 1.23523 1.01147 0.82755 0.95665 1.89183 1.37041 1.19072 1.85338 1.23313 0.87674 0.97348 0.93240 1.87881 1.19465 1.78536 1.43329 0.91525 0.91268 0.89440 0.93027 0.89023 0.91028 0.89903 0.94703 0.97827 0.92684 0.92599 0.89650 0.91168 0.89689 0.88537 0.90599 0.89950 0.87016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.57 71.98 0.69 -1.20 16 2 C 0.09 1.66 3.12 30.62 0.10 1.76 16 3 H 0.06 1.24 6.79 -2.39 -0.02 1.23 16 4 C 0.02 0.50 4.89 86.31 0.42 0.92 16 5 N -0.55 -13.66 4.12 -896.19 -3.69 -17.35 16 6 C 0.07 2.03 4.34 86.30 0.37 2.40 16 7 C 0.02 0.83 2.22 -12.60 -0.03 0.80 16 8 H 0.11 3.73 6.61 -2.39 -0.02 3.72 16 9 C 0.27 10.91 13.65 89.44 1.22 12.13 16 10 N -0.51 -22.73 18.54 20.01 0.37 -22.36 16 11 C 0.04 1.77 4.42 29.85 0.13 1.90 16 12 C -0.54 -28.54 8.60 25.60 0.22 -28.32 16 13 H 0.05 2.75 7.59 -2.91 -0.02 2.73 16 14 C 0.01 0.76 5.46 84.66 0.46 1.22 16 15 N -0.92 -52.69 13.29 21.45 0.28 -52.41 16 16 Si 0.95 43.50 29.54 68.60 2.03 45.53 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 20 C 0.03 0.79 3.81 86.08 0.33 1.12 16 21 C 0.09 2.04 1.04 -10.32 -0.01 2.03 16 22 C -0.17 -3.75 5.78 31.47 0.18 -3.57 16 23 C 0.05 0.93 7.65 72.53 0.55 1.48 16 24 O -0.39 -9.27 11.65 -148.98 -1.74 -11.00 16 25 C 0.06 1.22 6.92 72.30 0.50 1.73 16 26 O -0.37 -7.96 9.89 -148.98 -1.47 -9.43 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 1.76 8.03 -2.38 -0.02 1.75 16 32 H 0.07 1.80 8.04 -2.39 -0.02 1.78 16 33 H 0.08 2.29 7.92 -2.39 -0.02 2.27 16 34 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 37 H 0.06 1.21 8.11 -2.39 -0.02 1.19 16 38 H 0.09 2.20 6.61 -2.39 -0.02 2.18 16 39 H 0.07 1.91 7.65 -2.39 -0.02 1.89 16 40 H 0.08 1.82 6.85 -2.39 -0.02 1.80 16 41 H 0.10 1.87 8.14 -2.39 -0.02 1.86 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.08 1.48 8.07 -2.38 -0.02 1.46 16 44 H 0.11 1.96 7.84 -2.39 -0.02 1.94 16 Total: -1.00 -63.69 353.38 1.90 -61.80 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.98 Total: 10.83 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 5.14 Total: -5.60 kcal Atomic # 7 Polarization: -89.08 SS G_CDS: -3.04 Total: -92.12 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -3.21 Total: -20.44 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -63.69 1.90 -61.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373795614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.416 kcal (2) G-P(sol) polarization free energy of solvation -63.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds