Wall clock time and date at job start Tue Mar 31 2020 07:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09002 * 109.52359 * 2 1 4 4 C 1.53096 * 109.51948 * 239.88421 * 2 1 3 5 5 N 1.47017 * 109.38871 * 182.72161 * 4 2 1 6 6 C 1.46899 * 110.99941 * 182.83428 * 5 4 2 7 7 C 1.52999 * 109.47107 * 160.73095 * 6 5 4 8 8 H 1.09007 * 109.46973 * 55.04091 * 7 6 5 9 9 C 1.47198 * 109.47279 * 295.04690 * 7 6 5 10 10 N 5.37527 * 141.17226 * 297.11359 * 2 1 3 11 11 C 1.52998 * 109.47228 * 175.04062 * 7 6 5 12 12 C 1.50704 * 109.47252 * 184.99981 * 11 7 6 13 13 H 1.08001 * 119.99998 * 0.02562 * 12 11 7 14 14 C 1.37872 * 119.99903 * 180.02562 * 12 11 7 15 15 N 1.31511 * 120.00359 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99677 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47178 * 90.00158 * 16 14 12 18 18 H 1.48503 * 109.46786 * 209.99682 * 16 14 12 19 19 H 1.48497 * 109.47388 * 329.99718 * 16 14 12 20 20 C 1.47126 * 110.67206 * 59.11287 * 5 4 2 21 21 C 1.52456 * 109.30729 * 302.45389 * 20 5 4 22 22 C 1.53979 * 110.27130 * 177.73077 * 21 20 5 23 23 C 1.54613 * 103.87912 * 118.35043 * 22 21 20 24 24 O 1.44470 * 104.82352 * 23.88603 * 23 22 21 25 25 C 1.44542 * 105.36179 * 319.83031 * 24 23 22 26 26 O 1.42292 * 110.85620 * 55.18750 * 21 20 5 27 27 H 1.09001 * 109.47597 * 180.11735 * 1 2 3 28 28 H 1.09006 * 109.47233 * 300.11503 * 1 2 3 29 29 H 1.08995 * 109.47152 * 60.10977 * 1 2 3 30 30 H 1.09001 * 109.48139 * 62.74549 * 4 2 1 31 31 H 1.08993 * 109.50148 * 302.70993 * 4 2 1 32 32 H 1.08998 * 109.47214 * 280.72943 * 6 5 4 33 33 H 1.08993 * 109.47414 * 40.73477 * 6 5 4 34 34 H 1.08994 * 109.47372 * 305.00055 * 11 7 6 35 35 H 1.09000 * 109.46944 * 65.00252 * 11 7 6 36 36 H 0.97003 * 120.00265 * 180.02562 * 15 14 12 37 37 H 1.09005 * 109.49731 * 62.40203 * 20 5 4 38 38 H 1.08993 * 109.50569 * 182.50068 * 20 5 4 39 39 H 1.08992 * 110.54859 * 236.95373 * 22 21 20 40 40 H 1.09001 * 110.54124 * 359.61562 * 22 21 20 41 41 H 1.09008 * 110.36195 * 142.72091 * 23 22 21 42 42 H 1.08997 * 110.37012 * 265.04431 * 23 22 21 43 43 H 1.09001 * 110.39422 * 281.20059 * 25 24 23 44 44 H 1.09005 * 110.38631 * 158.81867 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0414 -0.7240 -1.2482 5 7 3.5101 -0.7795 -1.2127 6 6 4.0427 -1.4088 -2.4286 7 6 5.5164 -1.0324 -2.5941 8 1 6.0638 -1.3014 -1.6906 9 6 5.6298 0.4172 -2.8230 10 7 5.7174 1.5360 -2.9998 11 6 6.1039 -1.7851 -3.7895 12 6 7.5829 -1.5101 -3.8788 13 1 8.0566 -0.8635 -3.1550 14 6 8.3313 -2.0840 -4.8845 15 7 7.7545 -2.8710 -5.7662 16 14 10.1648 -1.7436 -4.9946 17 1 10.9052 -2.7591 -4.2035 18 1 10.5963 -1.8110 -6.4140 19 1 10.4504 -0.3903 -4.4541 20 6 3.9743 -1.4844 -0.0076 21 6 3.4259 -0.7823 1.2296 22 6 3.8519 -1.5355 2.5033 23 6 4.7038 -0.5031 3.2772 24 8 4.2530 0.7826 2.7968 25 6 4.0594 0.6135 1.3744 26 8 2.0082 -0.6781 1.1664 27 1 -0.3634 -1.0276 0.0021 28 1 -0.3634 0.5156 0.8890 29 1 -0.3633 0.5121 -0.8909 30 1 1.7194 -0.1846 -2.1389 31 1 1.6397 -1.7369 -1.2716 32 1 3.9513 -2.4919 -2.3471 33 1 3.4794 -1.0608 -3.2944 34 1 5.9404 -2.8551 -3.6612 35 1 5.6162 -1.4502 -4.7050 36 1 8.2812 -3.2750 -6.4735 37 1 3.6186 -2.5146 -0.0289 38 1 5.0637 -1.4758 0.0222 39 1 2.9781 -1.8249 3.0869 40 1 4.4477 -2.4119 2.2481 41 1 4.5255 -0.5914 4.3490 42 1 5.7619 -0.6415 3.0551 43 1 5.0161 0.6523 0.8535 44 1 3.3851 1.3785 0.9893 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373795618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:55 Heat of formation + Delta-G solvation = -65.753429 kcal Electronic energy + Delta-G solvation = -24706.008195 eV Core-core repulsion = 21237.263562 eV Total energy + Delta-G solvation = -3468.744633 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.84503 -38.29606 -37.02879 -35.24031 -33.59651 -33.41717 -31.80665 -30.68437 -29.11697 -27.24385 -26.42426 -24.62464 -23.51965 -22.10151 -21.67341 -21.38153 -19.69442 -17.36555 -16.81359 -16.64466 -16.13384 -15.99797 -15.64805 -15.35160 -14.80562 -14.62429 -14.35549 -13.96002 -13.62178 -13.38862 -13.02152 -12.90790 -12.69942 -12.38285 -12.35413 -12.11136 -11.97033 -11.79189 -11.66731 -11.59227 -11.28715 -11.21312 -11.19592 -11.09822 -10.69976 -10.63656 -10.48907 -10.23854 -9.94169 -9.64823 -9.47529 -9.23601 -8.49747 -8.37806 -6.13459 -4.16859 3.26481 3.33816 3.38345 3.40892 3.62511 3.72480 3.80638 3.85827 4.37391 4.41849 4.59657 4.60318 4.77306 4.83273 4.91033 4.94066 5.01945 5.17314 5.22771 5.24901 5.33333 5.43215 5.46587 5.47338 5.53419 5.58085 5.65651 5.68326 5.74393 5.78193 5.85501 5.89435 5.91622 5.99671 6.26730 6.41989 6.60883 6.92283 6.96238 7.15038 7.36913 7.47320 7.81513 8.18611 8.53984 8.87797 9.49042 10.97402 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018791 B = 0.004054 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.719512 B = 6904.735020 C = 7565.482749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.085 3.915 3 H 0.069 0.931 4 C 0.024 3.976 5 N -0.540 5.540 6 C 0.062 3.938 7 C 0.013 3.987 8 H 0.098 0.902 9 C 0.255 3.745 10 N -0.478 5.478 11 C 0.031 3.969 12 C -0.527 4.527 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.032 3.968 21 C 0.093 3.907 22 C -0.143 4.143 23 C 0.045 3.955 24 O -0.375 6.375 25 C 0.034 3.966 26 O -0.364 6.364 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.026 0.974 36 H 0.263 0.737 37 H 0.050 0.950 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.738 -0.438 14.696 19.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 H 0.086 0.914 4 C -0.104 4.104 5 N -0.264 5.264 6 C -0.066 4.066 7 C -0.009 4.009 8 H 0.116 0.884 9 C -0.062 4.062 10 N -0.155 5.155 11 C -0.007 4.007 12 C -0.565 4.565 13 H 0.075 0.925 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.096 4.096 21 C 0.053 3.947 22 C -0.181 4.181 23 C -0.032 4.032 24 O -0.293 6.293 25 C -0.043 4.043 26 O -0.283 6.283 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.553 1.753 14.545 19.293 hybrid contribution 0.974 -1.286 -0.597 1.720 sum -11.580 0.468 13.948 18.134 Atomic orbital electron populations 1.21725 0.92667 1.02923 1.02673 1.22242 0.94775 0.95995 0.84287 0.91358 1.22813 0.88130 1.00249 0.99218 1.62288 1.08270 1.53406 1.02474 1.22284 0.95173 0.97674 0.91487 1.19200 0.94915 0.83186 1.03597 0.88436 1.28843 0.91310 0.94563 0.91482 1.80995 1.10295 1.13526 1.10652 1.19174 0.95879 0.95274 0.90393 1.21123 0.92940 1.29448 1.12951 0.92508 1.24942 0.98647 0.94877 0.95411 1.69933 1.36059 1.31338 1.15687 0.86599 0.85326 0.78851 0.77371 1.20458 1.21119 1.19813 1.22757 1.01642 0.95946 0.89296 1.22383 0.82086 0.95315 0.94911 1.22909 1.01117 0.98917 0.95116 1.23448 0.97669 0.82680 0.99355 1.89153 1.87639 1.30955 1.21594 1.23906 1.01042 0.97100 0.82267 1.87925 1.19583 1.78131 1.42703 0.91846 0.91623 0.90839 0.89520 0.93699 0.92344 0.90067 0.94494 0.95557 0.92768 0.93198 0.88739 0.89209 0.89127 0.88947 0.91854 0.90752 0.88637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.57 37.15 0.36 -0.87 16 2 C 0.08 0.93 3.16 -26.69 -0.08 0.84 16 3 H 0.07 0.80 6.39 -51.93 -0.33 0.47 16 4 C 0.02 0.27 4.87 -3.71 -0.02 0.25 16 5 N -0.54 -6.95 4.17 -234.63 -0.98 -7.93 16 6 C 0.06 0.88 4.36 -3.82 -0.02 0.86 16 7 C 0.01 0.23 2.27 -93.41 -0.21 0.02 16 8 H 0.10 1.62 6.77 -51.93 -0.35 1.27 16 9 C 0.25 5.19 13.67 -20.76 -0.28 4.90 16 10 N -0.48 -10.61 18.54 42.15 0.78 -9.83 16 11 C 0.03 0.71 4.42 -27.88 -0.12 0.58 16 12 C -0.53 -13.75 8.60 -34.44 -0.30 -14.05 16 13 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 16 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 C 0.03 0.37 3.85 -3.98 -0.02 0.36 16 21 C 0.09 1.09 1.04 -89.89 -0.09 0.99 16 22 C -0.14 -1.37 6.53 -25.37 -0.17 -1.53 16 23 C 0.05 0.45 7.65 38.01 0.29 0.74 16 24 O -0.37 -5.06 11.65 -35.23 -0.41 -5.47 16 25 C 0.03 0.44 6.54 37.66 0.25 0.68 16 26 O -0.36 -4.50 9.88 -35.23 -0.35 -4.85 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.93 8.01 -51.93 -0.42 0.51 16 31 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.77 7.98 -51.93 -0.41 0.35 16 33 H 0.08 1.15 7.85 -51.93 -0.41 0.74 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.05 0.56 8.11 -51.93 -0.42 0.14 16 38 H 0.09 1.10 6.65 -51.93 -0.35 0.75 16 39 H 0.09 0.85 7.99 -51.93 -0.41 0.44 16 40 H 0.09 0.72 7.71 -51.93 -0.40 0.32 16 41 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 1.01 7.76 -51.93 -0.40 0.60 16 44 H 0.10 1.29 6.16 -51.93 -0.32 0.97 16 LS Contribution 352.79 15.07 5.32 5.32 Total: -1.00 -30.72 352.79 -7.58 -38.30 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -7.14 Total: -2.54 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -0.51 Total: -4.59 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.54 Total: -42.19 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.76 Total: -10.32 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.72 -7.58 -38.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373795618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.451 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds