Wall clock time and date at job start Tue Mar 31 2020 07:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09002 * 109.52359 * 2 1 4 4 C 1.53096 * 109.51948 * 239.88421 * 2 1 3 5 5 N 1.47017 * 109.38871 * 182.72161 * 4 2 1 6 6 C 1.46899 * 110.99941 * 182.83428 * 5 4 2 7 7 C 1.52999 * 109.47107 * 160.73095 * 6 5 4 8 8 H 1.09007 * 109.46973 * 55.04091 * 7 6 5 9 9 C 1.47198 * 109.47279 * 295.04690 * 7 6 5 10 10 N 5.37527 * 141.17226 * 297.11359 * 2 1 3 11 11 C 1.52998 * 109.47228 * 175.04062 * 7 6 5 12 12 C 1.50704 * 109.47252 * 184.99981 * 11 7 6 13 13 H 1.08001 * 119.99998 * 0.02562 * 12 11 7 14 14 C 1.37872 * 119.99903 * 180.02562 * 12 11 7 15 15 N 1.31511 * 120.00359 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99677 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47178 * 90.00158 * 16 14 12 18 18 H 1.48503 * 109.46786 * 209.99682 * 16 14 12 19 19 H 1.48497 * 109.47388 * 329.99718 * 16 14 12 20 20 C 1.47126 * 110.67206 * 59.11287 * 5 4 2 21 21 C 1.52456 * 109.30729 * 302.45389 * 20 5 4 22 22 C 1.53979 * 110.27130 * 177.73077 * 21 20 5 23 23 C 1.54613 * 103.87912 * 118.35043 * 22 21 20 24 24 O 1.44470 * 104.82352 * 23.88603 * 23 22 21 25 25 C 1.44542 * 105.36179 * 319.83031 * 24 23 22 26 26 O 1.42292 * 110.85620 * 55.18750 * 21 20 5 27 27 H 1.09001 * 109.47597 * 180.11735 * 1 2 3 28 28 H 1.09006 * 109.47233 * 300.11503 * 1 2 3 29 29 H 1.08995 * 109.47152 * 60.10977 * 1 2 3 30 30 H 1.09001 * 109.48139 * 62.74549 * 4 2 1 31 31 H 1.08993 * 109.50148 * 302.70993 * 4 2 1 32 32 H 1.08998 * 109.47214 * 280.72943 * 6 5 4 33 33 H 1.08993 * 109.47414 * 40.73477 * 6 5 4 34 34 H 1.08994 * 109.47372 * 305.00055 * 11 7 6 35 35 H 1.09000 * 109.46944 * 65.00252 * 11 7 6 36 36 H 0.97003 * 120.00265 * 180.02562 * 15 14 12 37 37 H 1.09005 * 109.49731 * 62.40203 * 20 5 4 38 38 H 1.08993 * 109.50569 * 182.50068 * 20 5 4 39 39 H 1.08992 * 110.54859 * 236.95373 * 22 21 20 40 40 H 1.09001 * 110.54124 * 359.61562 * 22 21 20 41 41 H 1.09008 * 110.36195 * 142.72091 * 23 22 21 42 42 H 1.08997 * 110.37012 * 265.04431 * 23 22 21 43 43 H 1.09001 * 110.39422 * 281.20059 * 25 24 23 44 44 H 1.09005 * 110.38631 * 158.81867 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0414 -0.7240 -1.2482 5 7 3.5101 -0.7795 -1.2127 6 6 4.0427 -1.4088 -2.4286 7 6 5.5164 -1.0324 -2.5941 8 1 6.0638 -1.3014 -1.6906 9 6 5.6298 0.4172 -2.8230 10 7 5.7174 1.5360 -2.9998 11 6 6.1039 -1.7851 -3.7895 12 6 7.5829 -1.5101 -3.8788 13 1 8.0566 -0.8635 -3.1550 14 6 8.3313 -2.0840 -4.8845 15 7 7.7545 -2.8710 -5.7662 16 14 10.1648 -1.7436 -4.9946 17 1 10.9052 -2.7591 -4.2035 18 1 10.5963 -1.8110 -6.4140 19 1 10.4504 -0.3903 -4.4541 20 6 3.9743 -1.4844 -0.0076 21 6 3.4259 -0.7823 1.2296 22 6 3.8519 -1.5355 2.5033 23 6 4.7038 -0.5031 3.2772 24 8 4.2530 0.7826 2.7968 25 6 4.0594 0.6135 1.3744 26 8 2.0082 -0.6781 1.1664 27 1 -0.3634 -1.0276 0.0021 28 1 -0.3634 0.5156 0.8890 29 1 -0.3633 0.5121 -0.8909 30 1 1.7194 -0.1846 -2.1389 31 1 1.6397 -1.7369 -1.2716 32 1 3.9513 -2.4919 -2.3471 33 1 3.4794 -1.0608 -3.2944 34 1 5.9404 -2.8551 -3.6612 35 1 5.6162 -1.4502 -4.7050 36 1 8.2812 -3.2750 -6.4735 37 1 3.6186 -2.5146 -0.0289 38 1 5.0637 -1.4758 0.0222 39 1 2.9781 -1.8249 3.0869 40 1 4.4477 -2.4119 2.2481 41 1 4.5255 -0.5914 4.3490 42 1 5.7619 -0.6415 3.0551 43 1 5.0161 0.6523 0.8535 44 1 3.3851 1.3785 0.9893 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373795618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:54 Heat of formation + Delta-G solvation = -85.864386 kcal Electronic energy + Delta-G solvation = -24706.880272 eV Core-core repulsion = 21237.263562 eV Total energy + Delta-G solvation = -3469.616709 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.75854 -39.31460 -38.32642 -36.57354 -35.40507 -34.28308 -33.45681 -31.57883 -30.08833 -28.71411 -27.37809 -26.00606 -24.37865 -23.71033 -22.94322 -22.22878 -20.59628 -18.57963 -18.40744 -17.96313 -17.28769 -16.94365 -16.61450 -16.58238 -16.21853 -15.76193 -15.59862 -14.88717 -14.72174 -14.64314 -14.45276 -14.15182 -13.81885 -13.73197 -13.43873 -13.31965 -13.16761 -13.04378 -12.83903 -12.73245 -12.59753 -12.49302 -12.44145 -12.37186 -12.19533 -12.03828 -11.71583 -11.51965 -11.33144 -11.16742 -10.80375 -10.54767 -10.41532 -9.35608 -8.19611 -6.27553 1.39906 1.42597 1.51256 2.05984 2.13648 2.41083 2.56252 2.71728 2.98393 3.16210 3.33399 3.54383 3.69816 3.74786 3.91367 4.03294 4.12812 4.17667 4.24851 4.31911 4.40831 4.41874 4.49433 4.60424 4.65655 4.74509 4.76541 4.77848 4.81911 4.82986 4.87519 4.94341 5.03521 5.06137 5.11037 5.27642 5.46581 5.60960 5.72152 5.78568 5.92347 5.96993 6.20860 6.27284 6.83192 6.93223 7.41285 8.91198 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018791 B = 0.004054 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.719512 B = 6904.735020 C = 7565.482749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.055 0.945 4 C 0.027 3.973 5 N -0.552 5.552 6 C 0.073 3.927 7 C 0.024 3.976 8 H 0.114 0.886 9 C 0.266 3.734 10 N -0.514 5.514 11 C 0.038 3.962 12 C -0.538 4.538 13 H 0.053 0.947 14 C 0.014 3.986 15 N -0.923 5.923 16 Si 0.946 3.054 17 H -0.266 1.266 18 H -0.285 1.285 19 H -0.277 1.277 20 C 0.032 3.968 21 C 0.094 3.906 22 C -0.137 4.137 23 C 0.039 3.961 24 O -0.399 6.399 25 C 0.034 3.966 26 O -0.374 6.374 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.002 0.998 36 H 0.264 0.736 37 H 0.061 0.939 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.065 -1.412 15.807 20.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.025 3.975 3 H 0.073 0.927 4 C -0.101 4.101 5 N -0.277 5.277 6 C -0.055 4.055 7 C 0.002 3.998 8 H 0.132 0.868 9 C -0.051 4.051 10 N -0.191 5.191 11 C 0.000 4.000 12 C -0.576 4.576 13 H 0.071 0.929 14 C -0.185 4.185 15 N -0.563 5.563 16 Si 0.772 3.228 17 H -0.191 1.191 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.096 4.096 21 C 0.053 3.947 22 C -0.175 4.175 23 C -0.037 4.037 24 O -0.319 6.319 25 C -0.042 4.042 26 O -0.293 6.293 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.020 0.980 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.886 0.776 15.675 20.306 hybrid contribution 1.067 -0.948 -0.912 1.694 sum -11.818 -0.172 14.763 18.912 Atomic orbital electron populations 1.21716 0.90822 1.03461 1.03433 1.22339 0.96186 0.95127 0.83866 0.92707 1.22835 0.86925 1.00835 0.99518 1.62195 1.09483 1.53739 1.02280 1.22092 0.92466 0.98658 0.92322 1.19150 0.97629 0.80919 1.02079 0.86796 1.29345 0.90175 0.95050 0.90487 1.80995 1.11659 1.14764 1.11698 1.18988 0.94093 0.95668 0.91285 1.21529 0.94892 1.28697 1.12502 0.92918 1.25663 1.02431 0.94984 0.95412 1.70021 1.37413 1.32461 1.16362 0.85734 0.81134 0.78610 0.77341 1.19100 1.21080 1.20211 1.22794 1.01692 0.96369 0.88707 1.22432 0.81790 0.94609 0.95849 1.22938 1.01406 0.99170 0.93959 1.23691 0.98225 0.81343 1.00456 1.89122 1.87967 1.33100 1.21698 1.23831 1.00329 0.97872 0.82212 1.87924 1.19897 1.78148 1.43347 0.91352 0.91621 0.89375 0.89104 0.92803 0.90635 0.90112 0.94538 0.97979 0.92718 0.92037 0.88697 0.88915 0.87116 0.87142 0.90961 0.91815 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.57 71.98 0.69 -1.42 16 2 C 0.08 1.70 3.16 30.62 0.10 1.80 16 3 H 0.06 1.28 6.39 -2.39 -0.02 1.26 16 4 C 0.03 0.55 4.87 86.31 0.42 0.97 16 5 N -0.55 -13.32 4.17 -896.23 -3.74 -17.06 16 6 C 0.07 1.94 4.36 86.30 0.38 2.32 16 7 C 0.02 0.83 2.27 -12.60 -0.03 0.80 16 8 H 0.11 3.59 6.77 -2.38 -0.02 3.57 16 9 C 0.27 10.70 13.67 89.44 1.22 11.92 16 10 N -0.51 -22.84 18.54 20.01 0.37 -22.47 16 11 C 0.04 1.71 4.42 29.85 0.13 1.85 16 12 C -0.54 -27.90 8.60 25.60 0.22 -27.68 16 13 H 0.05 2.72 7.59 -2.91 -0.02 2.70 16 14 C 0.01 0.76 5.46 84.65 0.46 1.23 16 15 N -0.92 -52.06 13.29 21.45 0.28 -51.78 16 16 Si 0.95 42.83 29.54 68.60 2.03 44.86 16 17 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 C 0.03 0.69 3.85 86.08 0.33 1.02 16 21 C 0.09 2.03 1.04 -10.32 -0.01 2.02 16 22 C -0.14 -2.31 6.53 31.47 0.21 -2.11 16 23 C 0.04 0.71 7.65 72.53 0.55 1.26 16 24 O -0.40 -10.56 11.65 -148.98 -1.74 -12.29 16 25 C 0.03 0.88 6.54 72.31 0.47 1.36 16 26 O -0.37 -8.68 9.88 -148.98 -1.47 -10.15 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 1.01 8.14 -2.38 -0.02 1.00 16 29 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.79 8.01 -2.39 -0.02 1.77 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 1.78 7.98 -2.39 -0.02 1.76 16 33 H 0.08 2.16 7.85 -2.39 -0.02 2.15 16 34 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 37 H 0.06 1.19 8.11 -2.38 -0.02 1.17 16 38 H 0.09 2.00 6.65 -2.39 -0.02 1.99 16 39 H 0.09 1.53 7.99 -2.39 -0.02 1.51 16 40 H 0.11 1.42 7.71 -2.39 -0.02 1.40 16 41 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.06 1.73 7.76 -2.39 -0.02 1.71 16 44 H 0.08 2.28 6.16 -2.38 -0.01 2.26 16 Total: -1.00 -65.04 352.79 1.86 -63.18 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.98 Total: 10.38 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 5.14 Total: -4.68 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -3.08 Total: -91.30 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -3.21 Total: -22.44 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -65.04 1.86 -63.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373795618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.682 kcal (2) G-P(sol) polarization free energy of solvation -65.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds