Wall clock time and date at job start Tue Mar 31 2020 07:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34232 * 116.99784 * 2 1 4 4 O 1.20822 * 119.99850 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99496 * 180.02562 * 3 2 1 6 6 C 1.53002 * 110.78497 * 56.75213 * 5 3 2 7 7 C 1.54942 * 110.72411 * 293.50261 * 5 3 2 8 8 N 1.48532 * 103.22509 * 204.23148 * 7 5 3 9 9 C 1.46903 * 111.00020 * 159.72131 * 8 7 5 10 10 C 1.53001 * 109.47242 * 176.93358 * 9 8 7 11 11 H 1.08996 * 109.46525 * 54.76813 * 10 9 8 12 12 C 1.47193 * 109.47159 * 294.76849 * 10 9 8 13 13 N 7.74899 * 167.85646 * 70.82101 * 2 1 3 14 14 C 1.52995 * 109.46977 * 174.76783 * 10 9 8 15 15 C 1.50703 * 109.47215 * 185.00129 * 14 10 9 16 16 H 1.07998 * 119.99854 * 0.02562 * 15 14 10 17 17 C 1.37875 * 119.99999 * 179.97438 * 15 14 10 18 18 N 1.31511 * 120.00276 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99724 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47412 * 60.00071 * 19 17 15 21 21 H 1.48496 * 109.47200 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47244 * 300.00083 * 19 17 15 23 23 C 1.47899 * 105.82412 * 39.20579 * 8 7 5 24 24 C 1.53997 * 107.05630 * 334.66981 * 23 8 7 25 25 H 1.09010 * 110.30591 * 120.13737 * 24 23 8 26 26 C 1.53000 * 110.30901 * 242.30541 * 24 23 8 27 27 H 1.09001 * 109.47509 * 59.99447 * 1 2 3 28 28 H 1.08997 * 109.47147 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47030 * 299.99424 * 1 2 3 30 30 H 1.09000 * 109.46529 * 183.24792 * 6 5 3 31 31 H 1.08996 * 109.46822 * 303.24944 * 6 5 3 32 32 H 1.08995 * 109.46501 * 63.25110 * 6 5 3 33 33 H 1.08995 * 110.66839 * 85.79567 * 7 5 3 34 34 H 1.09003 * 110.66488 * 322.66577 * 7 5 3 35 35 H 1.09000 * 109.46733 * 56.93291 * 9 8 7 36 36 H 1.09002 * 109.46779 * 296.94002 * 9 8 7 37 37 H 1.09002 * 109.47428 * 305.00465 * 14 10 9 38 38 H 1.08997 * 109.47233 * 64.99917 * 14 10 9 39 39 H 0.97001 * 120.00277 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.91443 * 94.01930 * 23 8 7 41 41 H 1.08994 * 109.92104 * 215.31716 * 23 8 7 42 42 H 1.08995 * 109.46795 * 58.54837 * 26 24 23 43 43 H 1.09004 * 109.46834 * 178.54817 * 26 24 23 44 44 H 1.09001 * 109.47164 * 298.54907 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.1491 0.5203 -1.1973 7 6 4.1446 0.7261 1.3280 8 7 5.4647 1.3996 1.4279 9 6 5.9557 1.3931 2.8124 10 6 7.3480 2.0254 2.8628 11 1 7.3121 3.0188 2.4157 12 6 8.2963 1.1844 2.1146 13 7 9.0276 0.5355 1.5396 14 6 7.8046 2.1377 4.3187 15 6 9.1200 2.8708 4.3775 16 1 9.5836 3.2219 3.4675 17 6 9.7310 3.0941 5.5932 18 7 9.1662 2.6670 6.7014 19 14 11.3611 4.0035 5.6660 20 1 11.1955 5.3632 5.0926 21 1 11.8045 4.1123 7.0791 22 1 12.3796 3.2573 4.8843 23 6 5.2495 2.7820 0.9483 24 6 4.0370 2.7474 -0.0004 25 1 3.2457 3.3975 0.3731 26 6 4.4535 3.1720 -1.4101 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 5.2376 0.5420 -1.1453 31 1 3.8048 -0.5137 -1.1774 32 1 3.8199 0.9952 -2.1214 33 1 4.2675 -0.3557 1.2764 34 1 3.5073 1.0023 2.1681 35 1 6.0097 0.3661 3.1739 36 1 5.2739 1.9645 3.4423 37 1 7.0574 2.6855 4.8928 38 1 7.9259 1.1395 4.7395 39 1 9.5963 2.8238 7.5566 40 1 5.0418 3.4397 1.7925 41 1 6.1315 3.1303 0.4111 42 1 5.2357 2.5058 -1.7739 43 1 3.5917 3.1178 -2.0753 44 1 4.8297 4.1947 -1.3853 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374344221.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:26 Heat of formation + Delta-G solvation = -67.120175 kcal Electronic energy + Delta-G solvation = -24159.414334 eV Core-core repulsion = 20690.610434 eV Total energy + Delta-G solvation = -3468.803899 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.22364 -39.29428 -36.90529 -36.39794 -34.42984 -33.28259 -31.49920 -31.29582 -27.99834 -27.58912 -26.11817 -25.77180 -23.69098 -22.17134 -21.74901 -20.96501 -19.21762 -17.61858 -17.23219 -16.61027 -16.50207 -16.33873 -15.45510 -15.09337 -14.61779 -14.49716 -14.12346 -13.72748 -13.54227 -13.38226 -13.07738 -12.94436 -12.70589 -12.50495 -12.28059 -12.13185 -12.01840 -11.87271 -11.81119 -11.40731 -11.17475 -11.07743 -11.01628 -10.96065 -10.88202 -10.67890 -10.64912 -10.58050 -10.45222 -10.19450 -9.54449 -9.24641 -8.46471 -8.38408 -6.10063 -4.13360 1.94886 2.42620 3.30958 3.35308 3.38936 3.73735 3.83615 4.00025 4.12473 4.32299 4.41186 4.58176 4.76006 4.81847 4.88539 4.89310 4.98253 5.13677 5.22159 5.28062 5.33486 5.38025 5.42700 5.57250 5.58559 5.66045 5.70027 5.72304 5.88627 5.95580 5.98018 5.99492 6.01744 6.16298 6.24281 6.36531 6.45723 6.85658 7.04920 7.41209 7.49892 7.51674 7.84861 8.22332 8.58469 8.91100 9.52169 11.00813 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026163 B = 0.003263 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.959041 B = 8579.767759 C = 8782.931024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.354 6.354 3 C 0.476 3.524 4 O -0.505 6.505 5 C -0.054 4.054 6 C -0.132 4.132 7 C 0.053 3.947 8 N -0.513 5.513 9 C 0.053 3.947 10 C 0.011 3.989 11 H 0.100 0.900 12 C 0.256 3.744 13 N -0.478 5.478 14 C 0.032 3.968 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.036 3.964 24 C -0.089 4.089 25 H 0.093 0.907 26 C -0.143 4.143 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.037 0.963 38 H 0.026 0.974 39 H 0.263 0.737 40 H 0.057 0.943 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.053 0.947 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.671 -2.894 -13.416 22.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.270 6.270 3 C 0.318 3.682 4 O -0.392 6.392 5 C -0.056 4.056 6 C -0.189 4.189 7 C -0.075 4.075 8 N -0.237 5.237 9 C -0.076 4.076 10 C -0.011 4.011 11 H 0.117 0.883 12 C -0.061 4.061 13 N -0.155 5.155 14 C -0.007 4.007 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.092 4.092 24 C -0.107 4.107 25 H 0.111 0.889 26 C -0.200 4.200 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.374 -3.853 -14.390 22.136 hybrid contribution -0.249 1.261 1.008 1.634 sum -16.622 -2.592 -13.382 21.497 Atomic orbital electron populations 1.23280 0.76492 1.03726 1.02505 1.86535 1.23243 1.33354 1.83879 1.23630 0.91678 0.81255 0.71653 1.90646 1.66951 1.36407 1.45211 1.21474 0.85995 0.98789 0.99316 1.21823 1.02904 0.99422 0.94766 1.23199 0.90163 1.00577 0.93606 1.64862 1.23225 1.13548 1.22067 1.22450 0.95336 1.02222 0.87606 1.19201 0.87930 0.95318 0.98614 0.88261 1.28741 0.92788 0.92935 0.91617 1.80908 1.11303 1.11114 1.12147 1.19169 0.97058 0.98454 0.86014 1.21095 1.05612 1.36894 0.92886 0.92544 1.24946 0.97639 0.95640 0.95690 1.69924 1.39151 1.46088 0.97880 0.86656 0.84047 0.80375 0.77017 1.20049 1.21198 1.20202 1.23080 0.97675 0.90486 0.97973 1.22080 0.98068 0.93201 0.97397 0.88862 1.21910 1.01356 1.01717 0.95049 0.91988 0.88039 0.91873 0.89537 0.91619 0.92041 0.88636 0.93137 0.89880 0.92499 0.94506 0.95536 0.92730 0.92457 0.89423 0.91449 0.92818 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.58 10.40 -39.26 -0.41 -3.99 16 3 C 0.48 5.45 6.65 36.01 0.24 5.69 16 4 O -0.51 -6.90 15.19 -18.75 -0.28 -7.19 16 5 C -0.05 -0.57 0.82 -153.80 -0.13 -0.70 16 6 C -0.13 -1.25 7.22 37.16 0.27 -0.98 16 7 C 0.05 0.59 5.44 -1.90 -0.01 0.58 16 8 N -0.51 -6.62 4.90 -230.45 -1.13 -7.75 16 9 C 0.05 0.76 4.10 -3.82 -0.02 0.75 16 10 C 0.01 0.20 2.17 -93.41 -0.20 0.00 16 11 H 0.10 1.69 7.18 -51.93 -0.37 1.32 16 12 C 0.26 5.25 13.67 -20.82 -0.28 4.97 16 13 N -0.48 -10.66 18.53 42.08 0.78 -9.88 16 14 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 15 C -0.53 -13.92 8.60 -34.44 -0.30 -14.22 16 16 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 19 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.04 0.42 5.19 -2.75 -0.01 0.41 16 24 C -0.09 -0.95 2.92 -89.26 -0.26 -1.21 16 25 H 0.09 1.10 6.85 -51.92 -0.36 0.75 16 26 C -0.14 -1.35 7.76 37.16 0.29 -1.06 16 27 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 30 H 0.09 0.90 7.58 -51.93 -0.39 0.50 16 31 H 0.06 0.58 8.06 -51.93 -0.42 0.16 16 32 H 0.06 0.53 6.76 -51.93 -0.35 0.18 16 33 H 0.10 1.01 8.05 -51.93 -0.42 0.60 16 34 H 0.05 0.56 7.92 -51.93 -0.41 0.15 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.06 0.77 7.94 -51.93 -0.41 0.36 16 37 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.06 0.67 7.64 -51.93 -0.40 0.28 16 41 H 0.09 1.05 7.63 -51.93 -0.40 0.66 16 42 H 0.07 0.63 6.51 -51.93 -0.34 0.29 16 43 H 0.05 0.49 7.81 -51.93 -0.41 0.09 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 360.95 15.07 5.44 5.44 Total: -1.00 -31.18 360.95 -6.62 -37.80 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -7.16 Total: -3.72 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 0.43 Total: -2.24 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.39 Total: -42.32 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.69 Total: -11.18 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.18 -6.62 -37.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374344221.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.321 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds