Wall clock time and date at job start Tue Mar 31 2020 07:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34232 * 116.99784 * 2 1 4 4 O 1.20822 * 119.99850 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99496 * 180.02562 * 3 2 1 6 6 C 1.53002 * 110.78497 * 56.75213 * 5 3 2 7 7 C 1.54942 * 110.72411 * 293.50261 * 5 3 2 8 8 N 1.48532 * 103.22509 * 204.23148 * 7 5 3 9 9 C 1.46903 * 111.00020 * 159.72131 * 8 7 5 10 10 C 1.53001 * 109.47242 * 176.93358 * 9 8 7 11 11 H 1.08996 * 109.46525 * 54.76813 * 10 9 8 12 12 C 1.47193 * 109.47159 * 294.76849 * 10 9 8 13 13 N 7.74899 * 167.85646 * 70.82101 * 2 1 3 14 14 C 1.52995 * 109.46977 * 174.76783 * 10 9 8 15 15 C 1.50703 * 109.47215 * 185.00129 * 14 10 9 16 16 H 1.07998 * 119.99854 * 0.02562 * 15 14 10 17 17 C 1.37875 * 119.99999 * 179.97438 * 15 14 10 18 18 N 1.31511 * 120.00276 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99724 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47412 * 60.00071 * 19 17 15 21 21 H 1.48496 * 109.47200 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47244 * 300.00083 * 19 17 15 23 23 C 1.47899 * 105.82412 * 39.20579 * 8 7 5 24 24 C 1.53997 * 107.05630 * 334.66981 * 23 8 7 25 25 H 1.09010 * 110.30591 * 120.13737 * 24 23 8 26 26 C 1.53000 * 110.30901 * 242.30541 * 24 23 8 27 27 H 1.09001 * 109.47509 * 59.99447 * 1 2 3 28 28 H 1.08997 * 109.47147 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47030 * 299.99424 * 1 2 3 30 30 H 1.09000 * 109.46529 * 183.24792 * 6 5 3 31 31 H 1.08996 * 109.46822 * 303.24944 * 6 5 3 32 32 H 1.08995 * 109.46501 * 63.25110 * 6 5 3 33 33 H 1.08995 * 110.66839 * 85.79567 * 7 5 3 34 34 H 1.09003 * 110.66488 * 322.66577 * 7 5 3 35 35 H 1.09000 * 109.46733 * 56.93291 * 9 8 7 36 36 H 1.09002 * 109.46779 * 296.94002 * 9 8 7 37 37 H 1.09002 * 109.47428 * 305.00465 * 14 10 9 38 38 H 1.08997 * 109.47233 * 64.99917 * 14 10 9 39 39 H 0.97001 * 120.00277 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.91443 * 94.01930 * 23 8 7 41 41 H 1.08994 * 109.92104 * 215.31716 * 23 8 7 42 42 H 1.08995 * 109.46795 * 58.54837 * 26 24 23 43 43 H 1.09004 * 109.46834 * 178.54817 * 26 24 23 44 44 H 1.09001 * 109.47164 * 298.54907 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.1491 0.5203 -1.1973 7 6 4.1446 0.7261 1.3280 8 7 5.4647 1.3996 1.4279 9 6 5.9557 1.3931 2.8124 10 6 7.3480 2.0254 2.8628 11 1 7.3121 3.0188 2.4157 12 6 8.2963 1.1844 2.1146 13 7 9.0276 0.5355 1.5396 14 6 7.8046 2.1377 4.3187 15 6 9.1200 2.8708 4.3775 16 1 9.5836 3.2219 3.4675 17 6 9.7310 3.0941 5.5932 18 7 9.1662 2.6670 6.7014 19 14 11.3611 4.0035 5.6660 20 1 11.1955 5.3632 5.0926 21 1 11.8045 4.1123 7.0791 22 1 12.3796 3.2573 4.8843 23 6 5.2495 2.7820 0.9483 24 6 4.0370 2.7474 -0.0004 25 1 3.2457 3.3975 0.3731 26 6 4.4535 3.1720 -1.4101 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 5.2376 0.5420 -1.1453 31 1 3.8048 -0.5137 -1.1774 32 1 3.8199 0.9952 -2.1214 33 1 4.2675 -0.3557 1.2764 34 1 3.5073 1.0023 2.1681 35 1 6.0097 0.3661 3.1739 36 1 5.2739 1.9645 3.4423 37 1 7.0574 2.6855 4.8928 38 1 7.9259 1.1395 4.7395 39 1 9.5963 2.8238 7.5566 40 1 5.0418 3.4397 1.7925 41 1 6.1315 3.1303 0.4111 42 1 5.2357 2.5058 -1.7739 43 1 3.5917 3.1178 -2.0753 44 1 4.8297 4.1947 -1.3853 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374344221.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:25 Heat of formation + Delta-G solvation = -85.315088 kcal Electronic energy + Delta-G solvation = -24160.203324 eV Core-core repulsion = 20690.610434 eV Total energy + Delta-G solvation = -3469.592890 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.09569 -40.24161 -38.21089 -37.46324 -35.87292 -34.99418 -32.97407 -32.25113 -29.02166 -28.63833 -27.04831 -26.94981 -24.96888 -23.52181 -23.10743 -21.93128 -20.09443 -18.69853 -18.33217 -18.13583 -17.77338 -17.38739 -16.63223 -16.44685 -15.89169 -15.45823 -15.25191 -14.92173 -14.53028 -14.36928 -14.27480 -14.16464 -13.98232 -13.71526 -13.59560 -13.36930 -13.11237 -12.98936 -12.88968 -12.86369 -12.60334 -12.48262 -12.40808 -12.24066 -11.88557 -11.83529 -11.76008 -11.66734 -11.51070 -11.45897 -11.30499 -11.08774 -10.53966 -9.40013 -8.18530 -6.26708 1.07167 1.41911 1.43623 1.50492 1.66975 2.10639 2.17617 2.42364 2.98078 3.17066 3.25696 3.36879 3.46122 3.77107 3.97058 4.07307 4.19887 4.26394 4.30220 4.33238 4.35649 4.54606 4.58717 4.70194 4.70672 4.74682 4.79327 4.82240 4.84532 4.91915 4.97053 5.05898 5.14757 5.20802 5.23121 5.36437 5.46847 5.47346 5.62231 5.79491 5.86906 5.97187 6.21801 6.65892 6.84446 6.95775 7.41873 8.92210 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026163 B = 0.003263 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.959041 B = 8579.767759 C = 8782.931024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.357 6.357 3 C 0.479 3.521 4 O -0.531 6.531 5 C -0.052 4.052 6 C -0.127 4.127 7 C 0.054 3.946 8 N -0.520 5.520 9 C 0.062 3.938 10 C 0.023 3.977 11 H 0.115 0.885 12 C 0.267 3.733 13 N -0.510 5.510 14 C 0.038 3.962 15 C -0.539 4.539 16 H 0.054 0.946 17 C 0.012 3.988 18 N -0.924 5.924 19 Si 0.947 3.053 20 H -0.263 1.263 21 H -0.283 1.283 22 H -0.280 1.280 23 C 0.034 3.966 24 C -0.085 4.085 25 H 0.083 0.917 26 C -0.140 4.140 27 H 0.063 0.937 28 H 0.131 0.869 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.033 0.967 38 H 0.002 0.998 39 H 0.264 0.736 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.334 -2.780 -14.385 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C 0.322 3.678 4 O -0.420 6.420 5 C -0.054 4.054 6 C -0.184 4.184 7 C -0.074 4.074 8 N -0.244 5.244 9 C -0.067 4.067 10 C 0.001 3.999 11 H 0.133 0.867 12 C -0.050 4.050 13 N -0.187 5.187 14 C -0.001 4.001 15 C -0.577 4.577 16 H 0.073 0.927 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.773 3.227 20 H -0.188 1.188 21 H -0.208 1.208 22 H -0.206 1.206 23 C -0.094 4.094 24 C -0.104 4.104 25 H 0.101 0.899 26 C -0.197 4.197 27 H 0.082 0.918 28 H 0.149 0.851 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.121 0.879 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.052 0.948 38 H 0.021 0.979 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.047 -3.747 -15.374 23.260 hybrid contribution -0.105 1.189 1.300 1.765 sum -17.153 -2.558 -14.074 22.334 Atomic orbital electron populations 1.23567 0.74861 1.05744 1.02493 1.86524 1.24869 1.32521 1.83374 1.23710 0.91867 0.81251 0.70932 1.90637 1.67538 1.37286 1.46576 1.21466 0.85733 0.98730 0.99443 1.21787 1.02215 0.99785 0.94610 1.23219 0.89239 1.00831 0.94071 1.64813 1.24469 1.14391 1.20721 1.22273 0.93306 1.02053 0.89050 1.19114 0.89258 0.96203 0.95295 0.86738 1.29157 0.92339 0.92382 0.91074 1.80908 1.12262 1.12310 1.13238 1.18988 0.95767 0.96439 0.88884 1.21521 1.06910 1.36590 0.92701 0.92739 1.25699 1.00737 0.96626 0.95630 1.70021 1.40580 1.47442 0.98300 0.85769 0.80209 0.79690 0.77048 1.18756 1.20801 1.20626 1.23114 0.98095 0.89901 0.98241 1.22016 0.97218 0.93268 0.97865 0.89882 1.21883 1.01502 1.02093 0.94189 0.91829 0.85065 0.92115 0.90339 0.90918 0.91152 0.87926 0.92937 0.89898 0.91205 0.94830 0.97909 0.92720 0.92348 0.89546 0.91203 0.92553 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.36 -6.59 10.40 -51.44 -0.54 -7.13 16 3 C 0.48 10.32 6.65 71.24 0.47 10.79 16 4 O -0.53 -14.03 15.19 21.97 0.33 -13.69 16 5 C -0.05 -1.02 0.82 -51.72 -0.04 -1.06 16 6 C -0.13 -2.17 7.22 71.98 0.52 -1.65 16 7 C 0.05 1.12 5.44 86.65 0.47 1.59 16 8 N -0.52 -12.61 4.90 -883.00 -4.33 -16.94 16 9 C 0.06 1.72 4.10 86.30 0.35 2.07 16 10 C 0.02 0.81 2.17 -12.60 -0.03 0.79 16 11 H 0.11 3.73 7.18 -2.39 -0.02 3.71 16 12 C 0.27 10.75 13.67 89.46 1.22 11.97 16 13 N -0.51 -22.48 18.53 19.98 0.37 -22.11 16 14 C 0.04 1.73 4.42 29.85 0.13 1.86 16 15 C -0.54 -28.34 8.60 25.60 0.22 -28.12 16 16 H 0.05 2.83 7.59 -2.91 -0.02 2.81 16 17 C 0.01 0.66 5.46 84.65 0.46 1.12 16 18 N -0.92 -52.85 13.29 21.45 0.28 -52.56 16 19 Si 0.95 43.22 29.54 68.60 2.03 45.25 16 20 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 23 C 0.03 0.75 5.19 86.45 0.45 1.20 16 24 C -0.08 -1.71 2.92 -9.91 -0.03 -1.74 16 25 H 0.08 1.88 6.85 -2.38 -0.02 1.87 16 26 C -0.14 -2.42 7.76 71.98 0.56 -1.86 16 27 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 28 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 30 H 0.08 1.50 7.58 -2.39 -0.02 1.48 16 31 H 0.07 1.14 8.06 -2.39 -0.02 1.12 16 32 H 0.07 1.07 6.76 -2.39 -0.02 1.05 16 33 H 0.10 1.99 8.05 -2.39 -0.02 1.97 16 34 H 0.05 1.08 7.92 -2.39 -0.02 1.06 16 35 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.07 1.77 7.94 -2.39 -0.02 1.75 16 37 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 40 H 0.06 1.28 7.64 -2.38 -0.02 1.27 16 41 H 0.09 1.94 7.63 -2.39 -0.02 1.92 16 42 H 0.07 1.18 6.51 -2.39 -0.02 1.16 16 43 H 0.06 0.95 7.81 -2.39 -0.02 0.93 16 44 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -65.51 360.95 5.09 -60.42 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 0.98 Total: 8.26 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 5.96 Total: -1.49 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -3.67 Total: -91.61 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.20 Total: -20.82 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -65.51 5.09 -60.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374344221.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.896 kcal (2) G-P(sol) polarization free energy of solvation -65.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds