Wall clock time and date at job start Tue Mar 31 2020 07:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 117.00344 * 2 1 4 4 O 1.20836 * 119.99519 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00317 * 179.97438 * 3 2 1 6 6 C 1.52997 * 110.64290 * 59.30259 * 5 3 2 7 7 C 1.54934 * 110.72386 * 296.14643 * 5 3 2 8 8 N 1.48540 * 103.22723 * 204.04886 * 7 5 3 9 9 C 1.46893 * 110.99824 * 159.72185 * 8 7 5 10 10 C 1.53000 * 109.47181 * 170.00211 * 9 8 7 11 11 H 1.09006 * 109.46827 * 304.99991 * 10 9 8 12 12 C 1.47195 * 109.47190 * 64.99829 * 10 9 8 13 13 N 7.74896 * 141.86929 * 27.37076 * 2 1 3 14 14 C 1.53000 * 109.47327 * 185.00415 * 10 9 8 15 15 C 1.50701 * 109.47148 * 174.99880 * 14 10 9 16 16 H 1.08003 * 119.99796 * 359.97438 * 15 14 10 17 17 C 1.37874 * 119.99979 * 179.97438 * 15 14 10 18 18 N 1.31507 * 120.00025 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99677 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47322 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47354 * 119.99993 * 19 17 15 22 22 H 1.48499 * 109.47043 * 239.99606 * 19 17 15 23 23 C 1.47898 * 105.81840 * 39.20967 * 8 7 5 24 24 C 1.53998 * 107.05852 * 334.67295 * 23 8 7 25 25 H 1.09003 * 110.31050 * 120.14161 * 24 23 8 26 26 C 1.53004 * 110.30437 * 242.30696 * 24 23 8 27 27 H 1.09005 * 109.47117 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46943 * 299.99540 * 1 2 3 29 29 H 1.08995 * 109.46860 * 60.00069 * 1 2 3 30 30 H 1.09002 * 109.47153 * 298.29927 * 6 5 3 31 31 H 1.09001 * 109.46832 * 178.30118 * 6 5 3 32 32 H 1.09004 * 109.47261 * 58.30100 * 6 5 3 33 33 H 1.08996 * 110.66955 * 322.48919 * 7 5 3 34 34 H 1.09005 * 110.66492 * 85.61997 * 7 5 3 35 35 H 1.08998 * 109.47863 * 290.00038 * 9 8 7 36 36 H 1.09000 * 109.47094 * 50.00259 * 9 8 7 37 37 H 1.09000 * 109.46857 * 294.99860 * 14 10 9 38 38 H 1.08997 * 109.47395 * 55.00191 * 14 10 9 39 39 H 0.97003 * 120.00238 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.91668 * 94.02070 * 23 8 7 41 41 H 1.08996 * 109.91985 * 215.31716 * 23 8 7 42 42 H 1.08999 * 109.47356 * 175.71419 * 26 24 23 43 43 H 1.09002 * 109.47049 * 295.71313 * 26 24 23 44 44 H 1.09003 * 109.46905 * 55.71694 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.1438 0.5729 -1.2302 7 6 4.1468 0.6661 1.3017 8 7 5.4691 1.3310 1.4277 9 6 5.9637 1.2616 2.8091 10 6 7.4203 1.7275 2.8533 11 1 8.0111 1.1403 2.1501 12 6 7.4916 3.1509 2.4852 13 7 7.5474 4.2490 2.1997 14 6 7.9739 1.5379 4.2670 15 6 9.4413 1.8806 4.2821 16 1 9.9303 2.2012 3.3740 17 6 10.1595 1.7849 5.4551 18 7 9.5640 1.3951 6.5608 19 14 11.9783 2.2105 5.4738 20 1 12.4052 2.6189 4.1115 21 1 12.2157 3.3275 6.4232 22 1 12.7602 1.0227 5.9018 23 6 5.2562 2.7339 1.0108 24 6 4.0409 2.7447 0.0650 25 1 3.2524 3.3795 0.4693 26 6 4.4547 3.2306 -1.3256 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.8708 -0.4822 -1.2082 31 1 5.2297 0.6673 -1.2262 32 1 3.7422 1.0334 -2.1329 33 1 3.5125 0.9061 2.1551 34 1 4.2667 -0.4127 1.2016 35 1 5.3568 1.9058 3.4453 36 1 5.8999 0.2338 3.1666 37 1 7.4408 2.1923 4.9567 38 1 7.8400 0.5005 4.5736 39 1 10.0693 1.3274 7.3861 40 1 5.0526 3.3539 1.8839 41 1 6.1377 3.1035 0.4870 42 1 3.6036 3.1609 -2.0030 43 1 4.7865 4.2671 -1.2645 44 1 5.2688 2.6099 -1.6999 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374344222.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:28 Heat of formation + Delta-G solvation = -64.486231 kcal Electronic energy + Delta-G solvation = -24253.175696 eV Core-core repulsion = 20784.486013 eV Total energy + Delta-G solvation = -3468.689683 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.22441 -39.34310 -36.96372 -36.40725 -34.40816 -33.33310 -31.42757 -31.39435 -28.00133 -27.56713 -26.10343 -25.76388 -23.68786 -22.17577 -21.76467 -20.95678 -19.16487 -17.65753 -17.22130 -16.74407 -16.58900 -16.33148 -15.38285 -15.03846 -14.63443 -14.46267 -14.10337 -13.81285 -13.52706 -13.32755 -13.12530 -12.94797 -12.66649 -12.54787 -12.29599 -12.21088 -12.05881 -12.00119 -11.87086 -11.43614 -11.13163 -11.07257 -11.05534 -10.86401 -10.79914 -10.72358 -10.64166 -10.49459 -10.43355 -10.24110 -9.54096 -9.22053 -8.46530 -8.42481 -6.10140 -4.13082 1.95429 2.42408 3.28319 3.36644 3.41266 3.59377 3.65913 3.98850 4.11901 4.32985 4.41341 4.58314 4.76378 4.81380 4.82391 4.88955 4.97677 5.14482 5.22402 5.28114 5.32238 5.38380 5.44508 5.56777 5.57999 5.65585 5.69920 5.75141 5.87610 5.96083 5.99678 6.03294 6.08602 6.16447 6.26857 6.32849 6.53277 6.82466 7.04473 7.42612 7.50265 7.52298 7.85258 8.22668 8.43080 8.91776 9.52534 11.00819 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028339 B = 0.003298 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.809383 B = 8489.127683 C = 8987.819912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.353 6.353 3 C 0.475 3.525 4 O -0.505 6.505 5 C -0.054 4.054 6 C -0.130 4.130 7 C 0.052 3.948 8 N -0.510 5.510 9 C 0.053 3.947 10 C 0.010 3.990 11 H 0.111 0.889 12 C 0.246 3.754 13 N -0.479 5.479 14 C 0.032 3.968 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.282 1.282 23 C 0.036 3.964 24 C -0.088 4.088 25 H 0.090 0.910 26 C -0.142 4.142 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.100 0.900 35 H 0.043 0.957 36 H 0.096 0.904 37 H 0.024 0.976 38 H 0.040 0.960 39 H 0.262 0.738 40 H 0.050 0.950 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.059 0.941 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.356 -5.917 -14.117 22.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.270 6.270 3 C 0.317 3.683 4 O -0.392 6.392 5 C -0.056 4.056 6 C -0.187 4.187 7 C -0.076 4.076 8 N -0.234 5.234 9 C -0.076 4.076 10 C -0.012 4.012 11 H 0.129 0.871 12 C -0.070 4.070 13 N -0.156 5.156 14 C -0.007 4.007 15 C -0.563 4.563 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.208 1.208 23 C -0.092 4.092 24 C -0.107 4.107 25 H 0.108 0.892 26 C -0.199 4.199 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.118 0.882 35 H 0.061 0.939 36 H 0.115 0.885 37 H 0.042 0.958 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.070 -4.251 -14.679 22.177 hybrid contribution 0.141 0.358 0.946 1.021 sum -15.929 -3.893 -13.733 21.389 Atomic orbital electron populations 1.23280 0.76504 1.03734 1.02494 1.86530 1.23229 1.33298 1.83895 1.23638 0.91670 0.81276 0.71681 1.90654 1.66961 1.36447 1.45166 1.21477 0.86014 0.98647 0.99454 1.21798 1.02850 0.99874 0.94163 1.23230 0.90147 1.00434 0.93831 1.64874 1.23032 1.12043 1.23446 1.22465 0.95027 1.02629 0.87465 1.19280 0.95580 0.83095 1.03213 0.87090 1.29180 0.91462 0.95204 0.91172 1.81036 1.10211 1.12871 1.11447 1.19174 0.96050 0.98678 0.86792 1.21175 0.94057 1.45705 0.95342 0.92428 1.24951 0.98516 0.94970 0.95560 1.69944 1.36236 1.47098 0.99768 0.86540 0.85243 0.78101 0.78231 1.19656 1.21027 1.20828 1.23220 0.97783 0.90126 0.98108 1.22072 0.97908 0.93181 0.97520 0.89150 1.21888 1.01364 1.01478 0.95149 0.87990 0.91911 0.92001 0.91449 0.89469 0.92240 0.93277 0.88220 0.93855 0.88547 0.95803 0.94213 0.92858 0.93211 0.89354 0.92706 0.92235 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.56 10.51 -39.25 -0.41 -3.98 16 3 C 0.48 5.58 6.62 36.01 0.24 5.82 16 4 O -0.51 -7.19 15.22 -18.76 -0.29 -7.48 16 5 C -0.05 -0.59 0.82 -153.80 -0.13 -0.71 16 6 C -0.13 -1.17 7.22 37.16 0.27 -0.90 16 7 C 0.05 0.57 5.40 -1.90 -0.01 0.56 16 8 N -0.51 -6.65 5.20 -230.46 -1.20 -7.85 16 9 C 0.05 0.77 4.47 -3.83 -0.02 0.75 16 10 C 0.01 0.19 2.42 -93.41 -0.23 -0.04 16 11 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 12 C 0.25 4.93 10.64 -20.76 -0.22 4.71 16 13 N -0.48 -10.25 17.94 42.15 0.76 -9.50 16 14 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 15 C -0.52 -13.85 8.60 -34.44 -0.30 -14.14 16 16 H 0.06 1.52 7.59 -52.48 -0.40 1.12 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 19 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.04 0.49 4.49 -2.75 -0.01 0.48 16 24 C -0.09 -1.07 2.91 -89.26 -0.26 -1.33 16 25 H 0.09 1.22 6.90 -51.93 -0.36 0.87 16 26 C -0.14 -1.51 7.79 37.16 0.29 -1.22 16 27 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 29 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.82 7.38 -51.93 -0.38 0.44 16 32 H 0.06 0.50 7.04 -51.93 -0.37 0.13 16 33 H 0.05 0.56 7.92 -51.93 -0.41 0.15 16 34 H 0.10 0.96 8.05 -51.93 -0.42 0.54 16 35 H 0.04 0.65 7.73 -51.93 -0.40 0.25 16 36 H 0.10 1.25 8.08 -51.93 -0.42 0.83 16 37 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 40 H 0.05 0.78 6.89 -51.93 -0.36 0.42 16 41 H 0.09 1.34 6.42 -51.93 -0.33 1.01 16 42 H 0.05 0.55 7.71 -51.93 -0.40 0.15 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.67 6.59 -51.93 -0.34 0.33 16 LS Contribution 356.59 15.07 5.37 5.37 Total: -1.00 -30.77 356.59 -6.68 -37.46 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -7.11 Total: -3.07 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 0.47 Total: -2.52 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.29 Total: -42.00 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -0.70 Total: -11.45 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.77 -6.68 -37.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374344222.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.028 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds