Wall clock time and date at job start Tue Mar 31 2020 07:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 117.00344 * 2 1 4 4 O 1.20836 * 119.99519 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00317 * 179.97438 * 3 2 1 6 6 C 1.52997 * 110.64290 * 59.30259 * 5 3 2 7 7 C 1.54934 * 110.72386 * 296.14643 * 5 3 2 8 8 N 1.48540 * 103.22723 * 204.04886 * 7 5 3 9 9 C 1.46893 * 110.99824 * 159.72185 * 8 7 5 10 10 C 1.53000 * 109.47181 * 170.00211 * 9 8 7 11 11 H 1.09006 * 109.46827 * 304.99991 * 10 9 8 12 12 C 1.47195 * 109.47190 * 64.99829 * 10 9 8 13 13 N 7.74896 * 141.86929 * 27.37076 * 2 1 3 14 14 C 1.53000 * 109.47327 * 185.00415 * 10 9 8 15 15 C 1.50701 * 109.47148 * 174.99880 * 14 10 9 16 16 H 1.08003 * 119.99796 * 359.97438 * 15 14 10 17 17 C 1.37874 * 119.99979 * 179.97438 * 15 14 10 18 18 N 1.31507 * 120.00025 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99677 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47322 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47354 * 119.99993 * 19 17 15 22 22 H 1.48499 * 109.47043 * 239.99606 * 19 17 15 23 23 C 1.47898 * 105.81840 * 39.20967 * 8 7 5 24 24 C 1.53998 * 107.05852 * 334.67295 * 23 8 7 25 25 H 1.09003 * 110.31050 * 120.14161 * 24 23 8 26 26 C 1.53004 * 110.30437 * 242.30696 * 24 23 8 27 27 H 1.09005 * 109.47117 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46943 * 299.99540 * 1 2 3 29 29 H 1.08995 * 109.46860 * 60.00069 * 1 2 3 30 30 H 1.09002 * 109.47153 * 298.29927 * 6 5 3 31 31 H 1.09001 * 109.46832 * 178.30118 * 6 5 3 32 32 H 1.09004 * 109.47261 * 58.30100 * 6 5 3 33 33 H 1.08996 * 110.66955 * 322.48919 * 7 5 3 34 34 H 1.09005 * 110.66492 * 85.61997 * 7 5 3 35 35 H 1.08998 * 109.47863 * 290.00038 * 9 8 7 36 36 H 1.09000 * 109.47094 * 50.00259 * 9 8 7 37 37 H 1.09000 * 109.46857 * 294.99860 * 14 10 9 38 38 H 1.08997 * 109.47395 * 55.00191 * 14 10 9 39 39 H 0.97003 * 120.00238 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.91668 * 94.02070 * 23 8 7 41 41 H 1.08996 * 109.91985 * 215.31716 * 23 8 7 42 42 H 1.08999 * 109.47356 * 175.71419 * 26 24 23 43 43 H 1.09002 * 109.47049 * 295.71313 * 26 24 23 44 44 H 1.09003 * 109.46905 * 55.71694 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.1438 0.5729 -1.2302 7 6 4.1468 0.6661 1.3017 8 7 5.4691 1.3310 1.4277 9 6 5.9637 1.2616 2.8091 10 6 7.4203 1.7275 2.8533 11 1 8.0111 1.1403 2.1501 12 6 7.4916 3.1509 2.4852 13 7 7.5474 4.2490 2.1997 14 6 7.9739 1.5379 4.2670 15 6 9.4413 1.8806 4.2821 16 1 9.9303 2.2012 3.3740 17 6 10.1595 1.7849 5.4551 18 7 9.5640 1.3951 6.5608 19 14 11.9783 2.2105 5.4738 20 1 12.4052 2.6189 4.1115 21 1 12.2157 3.3275 6.4232 22 1 12.7602 1.0227 5.9018 23 6 5.2562 2.7339 1.0108 24 6 4.0409 2.7447 0.0650 25 1 3.2524 3.3795 0.4693 26 6 4.4547 3.2306 -1.3256 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.8708 -0.4822 -1.2082 31 1 5.2297 0.6673 -1.2262 32 1 3.7422 1.0334 -2.1329 33 1 3.5125 0.9061 2.1551 34 1 4.2667 -0.4127 1.2016 35 1 5.3568 1.9058 3.4453 36 1 5.8999 0.2338 3.1666 37 1 7.4408 2.1923 4.9567 38 1 7.8400 0.5005 4.5736 39 1 10.0693 1.3274 7.3861 40 1 5.0526 3.3539 1.8839 41 1 6.1377 3.1035 0.4870 42 1 3.6036 3.1609 -2.0030 43 1 4.7865 4.2671 -1.2645 44 1 5.2688 2.6099 -1.6999 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374344222.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:28 Heat of formation + Delta-G solvation = -83.042756 kcal Electronic energy + Delta-G solvation = -24253.980367 eV Core-core repulsion = 20784.486013 eV Total energy + Delta-G solvation = -3469.494354 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.13674 -40.35550 -38.25420 -37.46596 -35.88846 -35.01120 -33.03217 -32.31724 -29.01601 -28.64740 -27.04121 -27.03155 -24.98111 -23.52520 -23.15850 -21.98386 -20.08581 -18.79886 -18.38032 -18.21783 -17.85243 -17.41428 -16.74180 -16.26802 -15.91999 -15.52920 -15.29222 -14.89572 -14.61753 -14.50805 -14.28823 -14.09192 -14.00679 -13.88958 -13.63793 -13.47655 -13.21842 -12.94351 -12.91033 -12.81693 -12.66750 -12.50064 -12.36027 -12.15887 -11.92621 -11.88087 -11.80508 -11.73912 -11.59233 -11.42175 -11.30771 -11.08164 -10.54401 -9.52644 -8.18496 -6.26213 1.05672 1.39805 1.43061 1.53317 1.64109 1.98966 2.02225 2.42361 2.92257 3.17025 3.20259 3.28888 3.40210 3.72218 3.94026 4.00533 4.12435 4.23430 4.30502 4.32732 4.34716 4.46111 4.49658 4.65162 4.69701 4.71466 4.77068 4.84287 4.87297 4.90685 4.95654 4.98782 5.09465 5.14047 5.19570 5.32360 5.45235 5.49058 5.63302 5.75920 5.81652 5.90377 6.22157 6.64277 6.79252 6.89534 7.42370 8.92628 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028339 B = 0.003298 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.809383 B = 8489.127683 C = 8987.819912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.478 3.522 4 O -0.536 6.536 5 C -0.051 4.051 6 C -0.126 4.126 7 C 0.052 3.948 8 N -0.505 5.505 9 C 0.062 3.938 10 C 0.021 3.979 11 H 0.127 0.873 12 C 0.254 3.746 13 N -0.506 5.506 14 C 0.038 3.962 15 C -0.536 4.536 16 H 0.054 0.946 17 C 0.011 3.989 18 N -0.924 5.924 19 Si 0.947 3.053 20 H -0.269 1.269 21 H -0.287 1.287 22 H -0.272 1.272 23 C 0.040 3.960 24 C -0.086 4.086 25 H 0.072 0.928 26 C -0.137 4.137 27 H 0.135 0.865 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.124 0.876 35 H 0.035 0.965 36 H 0.120 0.880 37 H -0.003 1.003 38 H 0.040 0.960 39 H 0.264 0.736 40 H 0.026 0.974 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.598 -7.643 -15.427 23.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.322 3.678 4 O -0.426 6.426 5 C -0.052 4.052 6 C -0.183 4.183 7 C -0.075 4.075 8 N -0.228 5.228 9 C -0.068 4.068 10 C -0.001 4.001 11 H 0.144 0.856 12 C -0.062 4.062 13 N -0.184 5.184 14 C 0.000 4.000 15 C -0.574 4.574 16 H 0.072 0.928 17 C -0.188 4.188 18 N -0.564 5.564 19 Si 0.774 3.226 20 H -0.193 1.193 21 H -0.213 1.213 22 H -0.197 1.197 23 C -0.088 4.088 24 C -0.105 4.105 25 H 0.090 0.910 26 C -0.194 4.194 27 H 0.153 0.847 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.142 0.858 35 H 0.054 0.946 36 H 0.138 0.862 37 H 0.016 0.984 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.317 -5.998 -16.003 23.629 hybrid contribution 0.142 0.888 1.357 1.628 sum -16.175 -5.110 -14.647 22.411 Atomic orbital electron populations 1.23576 0.74884 1.05867 1.02362 1.86516 1.24797 1.32139 1.83306 1.23732 0.91883 0.81318 0.70863 1.90648 1.67645 1.37542 1.46748 1.21465 0.85802 0.97634 1.00322 1.21804 1.02594 1.00575 0.93295 1.23335 0.88813 1.01499 0.93861 1.64838 1.24409 1.11442 1.22143 1.22348 0.92419 1.03597 0.88395 1.19210 0.98113 0.82200 1.00549 0.85585 1.29581 0.90567 0.95555 0.90512 1.81029 1.11325 1.13757 1.12277 1.18992 0.94215 0.97792 0.89033 1.21573 0.95883 1.44884 0.95070 0.92792 1.25697 1.02364 0.95210 0.95492 1.70033 1.37683 1.48376 1.00273 0.85656 0.80949 0.77962 0.78082 1.19348 1.21316 1.19746 1.23091 0.97950 0.90304 0.97456 1.21992 0.96547 0.94235 0.97774 0.90991 1.21857 1.01959 1.01236 0.94369 0.84741 0.92359 0.91914 0.89930 0.89572 0.91586 0.93577 0.85810 0.94620 0.86184 0.98424 0.94204 0.92751 0.95558 0.90663 0.91922 0.92899 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.52 16 2 O -0.35 -6.29 10.51 -51.39 -0.54 -6.83 16 3 C 0.48 10.54 6.62 71.24 0.47 11.01 16 4 O -0.54 -15.01 15.22 21.93 0.33 -14.68 16 5 C -0.05 -1.01 0.82 -51.72 -0.04 -1.05 16 6 C -0.13 -1.93 7.22 71.98 0.52 -1.41 16 7 C 0.05 1.05 5.40 86.65 0.47 1.51 16 8 N -0.50 -12.35 5.20 -883.03 -4.59 -16.95 16 9 C 0.06 1.70 4.47 86.30 0.39 2.09 16 10 C 0.02 0.74 2.42 -12.60 -0.03 0.71 16 11 H 0.13 4.13 8.14 -2.38 -0.02 4.11 16 12 C 0.25 10.16 10.64 89.44 0.95 11.11 16 13 N -0.51 -21.91 17.94 20.00 0.36 -21.56 16 14 C 0.04 1.75 4.42 29.85 0.13 1.88 16 15 C -0.54 -28.18 8.60 25.60 0.22 -27.96 16 16 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 17 C 0.01 0.61 5.46 84.65 0.46 1.07 16 18 N -0.92 -52.77 13.29 21.44 0.28 -52.49 16 19 Si 0.95 43.32 29.54 68.60 2.03 45.35 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 C 0.04 1.11 4.49 86.45 0.39 1.50 16 24 C -0.09 -2.06 2.91 -9.91 -0.03 -2.09 16 25 H 0.07 1.99 6.90 -2.39 -0.02 1.98 16 26 C -0.14 -2.81 7.79 71.98 0.56 -2.25 16 27 H 0.13 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 29 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.09 1.37 7.38 -2.39 -0.02 1.36 16 32 H 0.07 0.94 7.04 -2.38 -0.02 0.92 16 33 H 0.05 0.97 7.92 -2.39 -0.02 0.95 16 34 H 0.12 1.92 8.05 -2.38 -0.02 1.91 16 35 H 0.04 1.05 7.73 -2.39 -0.02 1.03 16 36 H 0.12 2.80 8.08 -2.39 -0.02 2.78 16 37 H 0.00 -0.14 8.14 -2.39 -0.02 -0.15 16 38 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 40 H 0.03 0.84 6.89 -2.39 -0.02 0.82 16 41 H 0.08 2.28 6.42 -2.39 -0.02 2.26 16 42 H 0.06 1.18 7.71 -2.39 -0.02 1.16 16 43 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.08 1.43 6.59 -2.39 -0.02 1.41 16 Total: -1.00 -65.95 356.59 4.51 -61.44 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 0.98 Total: 8.04 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 5.65 Total: -2.34 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -3.95 Total: -90.99 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.21 Total: -21.51 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -65.95 4.51 -61.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374344222.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.603 kcal (2) G-P(sol) polarization free energy of solvation -65.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds