Wall clock time and date at job start Tue Mar 31 2020 06:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.12779 * 2 1 4 4 C 1.52928 * 109.30094 * 240.52030 * 2 1 3 5 5 C 1.53348 * 108.80645 * 189.01587 * 4 2 1 6 6 H 1.09000 * 109.67425 * 307.71023 * 5 4 2 7 7 C 1.50704 * 109.66788 * 187.21684 * 5 4 2 8 8 O 1.21285 * 120.00169 * 337.06366 * 7 5 4 9 9 N 1.34774 * 119.99705 * 157.06682 * 7 5 4 10 10 C 1.37105 * 120.00087 * 4.70922 * 9 7 5 11 11 H 1.07997 * 120.00288 * 122.52896 * 10 9 7 12 12 C 1.38957 * 119.99590 * 302.52237 * 10 9 7 13 13 N 1.31410 * 119.99923 * 340.26767 * 12 10 9 14 14 Si 1.86798 * 119.99576 * 160.26384 * 12 10 9 15 15 H 1.48504 * 109.47117 * 90.00360 * 14 12 10 16 16 H 1.48499 * 109.47017 * 209.99936 * 14 12 10 17 17 H 1.48496 * 109.47320 * 330.00447 * 14 12 10 18 18 C 1.46500 * 120.00029 * 184.70897 * 9 7 5 19 19 C 1.54270 * 110.03182 * 239.84781 * 18 9 7 20 20 C 1.54962 * 104.16056 * 217.13830 * 19 18 9 21 21 C 1.54881 * 102.77980 * 37.88625 * 20 19 18 22 22 C 1.53872 * 110.03425 * 122.63275 * 18 9 7 23 23 C 1.53064 * 108.42477 * 67.44992 * 5 4 2 24 24 C 1.50171 * 109.89330 * 311.09535 * 23 5 4 25 25 O 1.21284 * 118.25246 * 197.56231 * 24 23 5 26 26 N 1.33353 * 123.50865 * 17.58263 * 24 23 5 27 27 H 1.09004 * 109.46729 * 179.48204 * 1 2 3 28 28 H 1.09000 * 109.47094 * 299.48160 * 1 2 3 29 29 H 1.08999 * 109.47520 * 59.48498 * 1 2 3 30 30 H 1.08994 * 109.60284 * 69.17310 * 4 2 1 31 31 H 1.09002 * 109.59987 * 308.84960 * 4 2 1 32 32 H 0.97001 * 119.99206 * 185.10290 * 13 12 10 33 33 H 1.08994 * 110.01617 * 1.23442 * 18 9 7 34 34 H 1.09000 * 110.48411 * 335.78288 * 19 18 9 35 35 H 1.09005 * 110.49006 * 98.42462 * 19 18 9 36 36 H 1.09000 * 110.71879 * 279.56905 * 20 19 18 37 37 H 1.08998 * 110.92474 * 156.29762 * 20 19 18 38 38 H 1.09003 * 110.49182 * 203.41012 * 21 20 19 39 39 H 1.09003 * 110.60296 * 80.81969 * 21 20 19 40 40 H 1.09001 * 110.02930 * 238.57197 * 22 18 9 41 41 H 1.09005 * 110.03475 * 359.97438 * 22 18 9 42 42 H 1.08999 * 109.40632 * 71.22521 * 23 5 4 43 43 H 1.09008 * 109.39716 * 191.05340 * 23 5 4 44 44 H 0.96997 * 117.95035 * 177.77806 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8872 1.0299 0.0000 4 6 2.0355 -0.7103 -1.2565 5 6 3.5520 -0.9047 -1.1382 6 1 4.0272 0.0485 -0.9065 7 6 4.0974 -1.4412 -2.4366 8 8 3.3667 -2.0324 -3.2031 9 7 5.3971 -1.2640 -2.7459 10 6 6.2445 -0.6819 -1.8388 11 1 7.1267 -1.2096 -1.5080 12 6 5.9681 0.5873 -1.3451 13 7 5.1512 1.3828 -1.9983 14 14 6.7578 1.1625 0.2470 15 1 8.0488 1.8318 -0.0543 16 1 5.8519 2.1197 0.9313 17 1 7.0007 -0.0067 1.1297 18 6 5.9045 -1.6935 -4.0514 19 6 7.0196 -2.7433 -3.8656 20 6 8.0391 -2.4156 -4.9857 21 6 8.0199 -0.8674 -5.0242 22 6 6.5401 -0.5014 -4.7880 23 6 3.8251 -1.9041 -0.0115 24 6 3.0522 -1.5146 1.2157 25 8 3.3881 -1.9886 2.2803 26 7 2.0158 -0.6755 1.1975 27 1 -0.3633 -1.0277 -0.0093 28 1 -0.3633 0.5058 0.8946 29 1 -0.3634 0.5218 -0.8853 30 1 1.8118 -0.1041 -2.1342 31 1 1.5484 -1.6811 -1.3487 32 1 5.0156 2.2940 -1.6945 33 1 5.0936 -2.1117 -4.6476 34 1 7.4834 -2.6376 -2.8849 35 1 6.6212 -3.7498 -3.9938 36 1 7.7110 -2.8299 -5.9390 37 1 9.0322 -2.7834 -4.7278 38 1 8.3516 -0.5058 -5.9976 39 1 8.6457 -0.4562 -4.2321 40 1 6.0380 -0.3415 -5.7423 41 1 6.4706 0.3969 -4.1744 42 1 3.5204 -2.9011 -0.3299 43 1 4.8905 -1.9075 0.2191 44 1 1.5539 -0.5053 2.0332 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408167752.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:48 Heat of formation + Delta-G solvation = -86.266058 kcal Electronic energy + Delta-G solvation = -25764.830027 eV Core-core repulsion = 22295.195900 eV Total energy + Delta-G solvation = -3469.634127 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.12566 -38.82308 -36.95350 -36.06249 -34.28653 -32.45849 -31.45685 -30.74190 -27.92609 -27.15349 -26.72182 -24.93297 -23.37271 -21.93094 -20.12607 -19.62481 -19.26000 -18.50500 -16.89052 -16.58958 -15.90948 -15.64812 -15.23933 -14.76722 -14.62909 -14.34561 -14.07666 -13.71543 -13.46663 -12.88999 -12.82342 -12.63650 -12.54873 -12.41764 -11.91345 -11.64715 -11.32839 -11.20975 -11.11045 -11.08165 -10.81173 -10.66849 -10.48798 -10.44355 -10.32284 -10.24100 -10.18201 -9.90307 -9.65610 -9.52057 -8.79781 -8.74651 -8.20402 -7.26926 -6.50422 -4.33019 3.04993 3.08687 3.16941 3.23211 3.64175 3.91677 4.06516 4.62324 4.75755 5.02564 5.08450 5.23448 5.35357 5.38402 5.46803 5.57919 5.67598 5.74535 5.82920 5.92725 6.08413 6.13829 6.15562 6.21065 6.25599 6.32736 6.39180 6.42668 6.46553 6.51134 6.54821 6.59379 6.74134 6.76515 6.96996 7.07646 7.11263 7.13716 7.33761 7.40172 7.70840 8.01622 8.55531 8.61635 8.84104 9.52580 9.95755 10.52313 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016584 B = 0.006472 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.951540 B = 4325.612179 C = 4926.989619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.136 3.864 3 H 0.074 0.926 4 C -0.106 4.106 5 C -0.109 4.109 6 H 0.133 0.867 7 C 0.524 3.476 8 O -0.609 6.609 9 N -0.444 5.444 10 C -0.338 4.338 11 H 0.082 0.918 12 C 0.058 3.942 13 N -0.854 5.854 14 Si 0.889 3.111 15 H -0.274 1.274 16 H -0.279 1.279 17 H -0.261 1.261 18 C 0.134 3.866 19 C -0.128 4.128 20 C -0.121 4.121 21 C -0.116 4.116 22 C -0.126 4.126 23 C -0.119 4.119 24 C 0.527 3.473 25 O -0.571 6.571 26 N -0.717 5.717 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.272 0.728 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.045 0.955 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.111 0.889 44 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.409 -0.059 -0.257 2.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.031 3.969 3 H 0.092 0.908 4 C -0.144 4.144 5 C -0.130 4.130 6 H 0.151 0.849 7 C 0.313 3.687 8 O -0.495 6.495 9 N -0.163 5.163 10 C -0.466 4.466 11 H 0.100 0.900 12 C -0.148 4.148 13 N -0.490 5.490 14 Si 0.715 3.285 15 H -0.199 1.199 16 H -0.204 1.204 17 H -0.185 1.185 18 C 0.030 3.970 19 C -0.167 4.167 20 C -0.159 4.159 21 C -0.154 4.154 22 C -0.164 4.164 23 C -0.159 4.159 24 C 0.316 3.684 25 O -0.450 6.450 26 N -0.369 5.369 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.129 0.871 44 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -2.573 -0.458 -0.298 2.630 hybrid contribution 0.257 0.770 0.963 1.259 sum -2.316 0.312 0.665 2.430 Atomic orbital electron populations 1.22140 0.94675 1.02633 1.02378 1.21040 0.93941 0.96584 0.85357 0.90801 1.21688 0.95751 1.01082 0.95892 1.21563 0.95107 1.02797 0.93515 0.84929 1.20103 0.82594 0.78902 0.87069 1.90497 1.59104 1.46327 1.53526 1.43358 1.07152 1.53816 1.12021 1.19077 1.08839 0.99310 1.19346 0.89997 1.25530 0.95534 0.95657 0.98114 1.69961 1.35355 1.06267 1.37394 0.86503 0.79550 0.79536 0.82955 1.19904 1.20435 1.18540 1.21579 0.95203 0.93393 0.86844 1.22658 0.96573 0.98057 0.99373 1.22431 0.98530 0.96494 0.98452 1.22262 0.97855 0.95190 1.00108 1.22386 0.93836 1.00948 0.99214 1.21514 1.02141 1.00362 0.91901 1.20376 0.79588 0.77286 0.91170 1.90691 1.67771 1.54711 1.31871 1.45664 1.32745 1.46712 1.11742 0.92033 0.92492 0.90912 0.89921 0.91299 0.91791 0.90622 0.90585 0.92893 0.92425 0.92516 0.93170 0.91725 0.93667 0.88586 0.89024 0.87120 0.77443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.41 37.16 0.35 -1.46 16 2 C 0.14 2.00 3.67 -68.34 -0.25 1.75 16 3 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 4 C -0.11 -1.90 3.98 -26.59 -0.11 -2.00 16 5 C -0.11 -2.26 1.73 -91.56 -0.16 -2.42 16 6 H 0.13 2.97 4.03 -51.93 -0.21 2.76 16 7 C 0.52 12.38 6.38 -10.98 -0.07 12.31 16 8 O -0.61 -15.56 15.59 5.55 0.09 -15.47 16 9 N -0.44 -10.24 2.32 -106.54 -0.25 -10.49 16 10 C -0.34 -7.78 6.45 -14.93 -0.10 -7.88 16 11 H 0.08 1.89 6.92 -52.49 -0.36 1.53 16 12 C 0.06 1.33 3.25 -17.47 -0.06 1.27 16 13 N -0.85 -20.29 11.81 55.50 0.66 -19.64 16 14 Si 0.89 18.62 29.60 -169.99 -5.03 13.59 16 15 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 16 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 18 C 0.13 2.82 3.29 -66.81 -0.22 2.60 16 19 C -0.13 -2.33 6.42 -25.03 -0.16 -2.49 16 20 C -0.12 -1.87 6.91 -24.70 -0.17 -2.04 16 21 C -0.12 -1.93 6.83 -25.08 -0.17 -2.10 16 22 C -0.13 -2.49 6.26 -25.61 -0.16 -2.65 16 23 C -0.12 -2.37 5.24 -28.11 -0.15 -2.52 16 24 C 0.53 10.19 7.71 -11.87 -0.09 10.10 16 25 O -0.57 -12.58 17.78 5.55 0.10 -12.48 16 26 N -0.72 -11.41 5.13 -54.81 -0.28 -11.69 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 31 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 32 H 0.27 6.19 8.32 -40.82 -0.34 5.85 16 33 H 0.08 1.71 6.96 -51.93 -0.36 1.35 16 34 H 0.08 1.45 6.53 -51.93 -0.34 1.11 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 2.20 7.16 -51.93 -0.37 1.82 16 42 H 0.09 1.77 8.09 -51.93 -0.42 1.35 16 43 H 0.11 2.31 7.58 -51.92 -0.39 1.92 16 44 H 0.39 5.42 8.67 -40.82 -0.35 5.06 16 LS Contribution 342.97 15.07 5.17 5.17 Total: -1.00 -27.66 342.97 -8.08 -35.73 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -7.02 Total: 12.81 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -1.51 Total: 2.47 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.13 Total: -41.81 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: 0.19 Total: -27.96 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.66 -8.08 -35.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408167752.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.531 kcal (2) G-P(sol) polarization free energy of solvation -27.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds