Wall clock time and date at job start Tue Mar 31 2020 06:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.12779 * 2 1 4 4 C 1.52928 * 109.30094 * 240.52030 * 2 1 3 5 5 C 1.53348 * 108.80645 * 189.01587 * 4 2 1 6 6 H 1.09000 * 109.67425 * 307.71023 * 5 4 2 7 7 C 1.50704 * 109.66788 * 187.21684 * 5 4 2 8 8 O 1.21285 * 120.00169 * 337.06366 * 7 5 4 9 9 N 1.34774 * 119.99705 * 157.06682 * 7 5 4 10 10 C 1.37105 * 120.00087 * 4.70922 * 9 7 5 11 11 H 1.07997 * 120.00288 * 122.52896 * 10 9 7 12 12 C 1.38957 * 119.99590 * 302.52237 * 10 9 7 13 13 N 1.31410 * 119.99923 * 340.26767 * 12 10 9 14 14 Si 1.86798 * 119.99576 * 160.26384 * 12 10 9 15 15 H 1.48504 * 109.47117 * 90.00360 * 14 12 10 16 16 H 1.48499 * 109.47017 * 209.99936 * 14 12 10 17 17 H 1.48496 * 109.47320 * 330.00447 * 14 12 10 18 18 C 1.46500 * 120.00029 * 184.70897 * 9 7 5 19 19 C 1.54270 * 110.03182 * 239.84781 * 18 9 7 20 20 C 1.54962 * 104.16056 * 217.13830 * 19 18 9 21 21 C 1.54881 * 102.77980 * 37.88625 * 20 19 18 22 22 C 1.53872 * 110.03425 * 122.63275 * 18 9 7 23 23 C 1.53064 * 108.42477 * 67.44992 * 5 4 2 24 24 C 1.50171 * 109.89330 * 311.09535 * 23 5 4 25 25 O 1.21284 * 118.25246 * 197.56231 * 24 23 5 26 26 N 1.33353 * 123.50865 * 17.58263 * 24 23 5 27 27 H 1.09004 * 109.46729 * 179.48204 * 1 2 3 28 28 H 1.09000 * 109.47094 * 299.48160 * 1 2 3 29 29 H 1.08999 * 109.47520 * 59.48498 * 1 2 3 30 30 H 1.08994 * 109.60284 * 69.17310 * 4 2 1 31 31 H 1.09002 * 109.59987 * 308.84960 * 4 2 1 32 32 H 0.97001 * 119.99206 * 185.10290 * 13 12 10 33 33 H 1.08994 * 110.01617 * 1.23442 * 18 9 7 34 34 H 1.09000 * 110.48411 * 335.78288 * 19 18 9 35 35 H 1.09005 * 110.49006 * 98.42462 * 19 18 9 36 36 H 1.09000 * 110.71879 * 279.56905 * 20 19 18 37 37 H 1.08998 * 110.92474 * 156.29762 * 20 19 18 38 38 H 1.09003 * 110.49182 * 203.41012 * 21 20 19 39 39 H 1.09003 * 110.60296 * 80.81969 * 21 20 19 40 40 H 1.09001 * 110.02930 * 238.57197 * 22 18 9 41 41 H 1.09005 * 110.03475 * 359.97438 * 22 18 9 42 42 H 1.08999 * 109.40632 * 71.22521 * 23 5 4 43 43 H 1.09008 * 109.39716 * 191.05340 * 23 5 4 44 44 H 0.96997 * 117.95035 * 177.77806 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8872 1.0299 0.0000 4 6 2.0355 -0.7103 -1.2565 5 6 3.5520 -0.9047 -1.1382 6 1 4.0272 0.0485 -0.9065 7 6 4.0974 -1.4412 -2.4366 8 8 3.3667 -2.0324 -3.2031 9 7 5.3971 -1.2640 -2.7459 10 6 6.2445 -0.6819 -1.8388 11 1 7.1267 -1.2096 -1.5080 12 6 5.9681 0.5873 -1.3451 13 7 5.1512 1.3828 -1.9983 14 14 6.7578 1.1625 0.2470 15 1 8.0488 1.8318 -0.0543 16 1 5.8519 2.1197 0.9313 17 1 7.0007 -0.0067 1.1297 18 6 5.9045 -1.6935 -4.0514 19 6 7.0196 -2.7433 -3.8656 20 6 8.0391 -2.4156 -4.9857 21 6 8.0199 -0.8674 -5.0242 22 6 6.5401 -0.5014 -4.7880 23 6 3.8251 -1.9041 -0.0115 24 6 3.0522 -1.5146 1.2157 25 8 3.3881 -1.9886 2.2803 26 7 2.0158 -0.6755 1.1975 27 1 -0.3633 -1.0277 -0.0093 28 1 -0.3633 0.5058 0.8946 29 1 -0.3634 0.5218 -0.8853 30 1 1.8118 -0.1041 -2.1342 31 1 1.5484 -1.6811 -1.3487 32 1 5.0156 2.2940 -1.6945 33 1 5.0936 -2.1117 -4.6476 34 1 7.4834 -2.6376 -2.8849 35 1 6.6212 -3.7498 -3.9938 36 1 7.7110 -2.8299 -5.9390 37 1 9.0322 -2.7834 -4.7278 38 1 8.3516 -0.5058 -5.9976 39 1 8.6457 -0.4562 -4.2321 40 1 6.0380 -0.3415 -5.7423 41 1 6.4706 0.3969 -4.1744 42 1 3.5204 -2.9011 -0.3299 43 1 4.8905 -1.9075 0.2191 44 1 1.5539 -0.5053 2.0332 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408167752.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:47 Heat of formation + Delta-G solvation = -102.325227 kcal Electronic energy + Delta-G solvation = -25765.526405 eV Core-core repulsion = 22295.195900 eV Total energy + Delta-G solvation = -3470.330505 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.70351 -40.50297 -38.53907 -37.56672 -36.06830 -34.00614 -33.25151 -32.05629 -29.41108 -28.72944 -28.08397 -26.72954 -24.92315 -23.26717 -21.60119 -21.21962 -20.93018 -20.04602 -18.45917 -18.23126 -17.53348 -17.23063 -16.91982 -16.37094 -16.16151 -15.89583 -15.60466 -15.31952 -14.95937 -14.52057 -14.38658 -14.17852 -14.04761 -13.59996 -13.37953 -13.13144 -13.00367 -12.86795 -12.55347 -12.46186 -12.38616 -12.25283 -12.10302 -11.88536 -11.82803 -11.78344 -11.70674 -11.32845 -11.30105 -11.14322 -10.55631 -10.14146 -10.01534 -9.08743 -8.31418 -6.17951 1.35437 1.45517 1.52599 1.53399 2.09031 2.27423 2.31920 2.94551 2.97606 3.61629 3.79466 3.87307 3.92170 3.93321 4.04507 4.22020 4.31392 4.36602 4.40721 4.63864 4.70484 4.71977 4.79809 4.83210 4.85976 4.90110 4.93819 4.96126 5.07167 5.13318 5.16648 5.20919 5.27335 5.28926 5.43060 5.50339 5.54837 5.59976 5.67916 5.83533 6.22241 6.25419 6.72167 7.01629 7.15549 7.68584 8.13402 8.72333 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016584 B = 0.006472 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.951540 B = 4325.612179 C = 4926.989619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.139 3.861 3 H 0.078 0.922 4 C -0.102 4.102 5 C -0.105 4.105 6 H 0.120 0.880 7 C 0.507 3.493 8 O -0.638 6.638 9 N -0.448 5.448 10 C -0.344 4.344 11 H 0.080 0.920 12 C 0.040 3.960 13 N -0.873 5.873 14 Si 0.933 3.067 15 H -0.268 1.268 16 H -0.279 1.279 17 H -0.268 1.268 18 C 0.122 3.878 19 C -0.124 4.124 20 C -0.109 4.109 21 C -0.109 4.109 22 C -0.122 4.122 23 C -0.114 4.114 24 C 0.528 3.472 25 O -0.600 6.600 26 N -0.701 5.701 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.274 0.726 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.062 0.938 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.356 0.375 -0.057 2.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.035 3.965 3 H 0.096 0.904 4 C -0.140 4.140 5 C -0.126 4.126 6 H 0.138 0.862 7 C 0.298 3.702 8 O -0.526 6.526 9 N -0.166 5.166 10 C -0.472 4.472 11 H 0.098 0.902 12 C -0.165 4.165 13 N -0.509 5.509 14 Si 0.758 3.242 15 H -0.193 1.193 16 H -0.204 1.204 17 H -0.193 1.193 18 C 0.018 3.982 19 C -0.162 4.162 20 C -0.147 4.147 21 C -0.147 4.147 22 C -0.160 4.160 23 C -0.154 4.154 24 C 0.316 3.684 25 O -0.483 6.483 26 N -0.352 5.352 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -2.523 0.005 -0.108 2.526 hybrid contribution 0.229 0.646 0.824 1.072 sum -2.295 0.650 0.716 2.490 Atomic orbital electron populations 1.22093 0.91298 1.03353 1.04237 1.21117 0.96457 0.95765 0.83191 0.90431 1.21644 0.93747 1.01226 0.97376 1.21498 0.96889 1.01934 0.92312 0.86210 1.20664 0.82784 0.78868 0.87908 1.90459 1.59720 1.47777 1.54611 1.43538 1.07165 1.53234 1.12648 1.19127 1.08781 0.99515 1.19743 0.90219 1.25886 0.95723 0.95510 0.99414 1.70018 1.36054 1.06541 1.38257 0.85832 0.79141 0.78786 0.80460 1.19282 1.20379 1.19278 1.21787 0.95524 0.94832 0.86047 1.22599 0.96267 0.97310 1.00055 1.22403 0.98826 0.95453 0.98008 1.22215 0.95055 0.96171 1.01246 1.22295 0.96412 0.98863 0.98444 1.21401 1.01584 1.00322 0.92126 1.20163 0.80204 0.77789 0.90205 1.90677 1.68895 1.56229 1.32516 1.45545 1.31493 1.45231 1.12940 0.91894 0.89966 0.89762 0.90875 0.91537 0.91564 0.92755 0.91771 0.92412 0.90726 0.90118 0.90591 0.92436 0.93269 0.91884 0.88938 0.88556 0.75715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.41 71.98 0.68 -2.31 16 2 C 0.14 3.85 3.67 45.10 0.17 4.02 16 3 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 4 C -0.10 -3.62 3.98 30.69 0.12 -3.50 16 5 C -0.11 -4.44 1.73 -11.40 -0.02 -4.46 16 6 H 0.12 5.42 4.03 -2.39 -0.01 5.41 16 7 C 0.51 24.67 6.38 87.66 0.56 25.23 16 8 O -0.64 -33.63 15.59 -3.05 -0.05 -33.67 16 9 N -0.45 -21.17 2.32 -609.38 -1.41 -22.58 16 10 C -0.34 -16.11 6.45 84.04 0.54 -15.57 16 11 H 0.08 3.73 6.92 -2.91 -0.02 3.71 16 12 C 0.04 1.83 3.25 84.93 0.28 2.11 16 13 N -0.87 -41.83 11.81 21.67 0.26 -41.58 16 14 Si 0.93 38.02 29.60 68.60 2.03 40.05 16 15 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 16 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 17 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 18 C 0.12 5.23 3.29 45.72 0.15 5.38 16 19 C -0.12 -4.44 6.42 31.70 0.20 -4.24 16 20 C -0.11 -3.11 6.91 31.91 0.22 -2.89 16 21 C -0.11 -3.43 6.83 31.67 0.22 -3.21 16 22 C -0.12 -4.83 6.26 31.32 0.20 -4.63 16 23 C -0.11 -4.61 5.24 29.70 0.16 -4.45 16 24 C 0.53 20.14 7.71 87.71 0.68 20.81 16 25 O -0.60 -26.22 17.78 -3.04 -0.05 -26.27 16 26 N -0.70 -21.11 5.13 -446.50 -2.29 -23.40 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.07 2.38 8.08 -2.39 -0.02 2.36 16 32 H 0.27 12.50 8.32 -92.71 -0.77 11.73 16 33 H 0.05 2.53 6.96 -2.39 -0.02 2.51 16 34 H 0.06 2.44 6.53 -2.39 -0.02 2.43 16 35 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.06 2.93 7.16 -2.38 -0.02 2.91 16 42 H 0.09 3.66 8.09 -2.39 -0.02 3.65 16 43 H 0.10 4.13 7.58 -2.38 -0.02 4.12 16 44 H 0.41 10.25 8.67 -92.71 -0.80 9.44 16 Total: -1.00 -60.41 342.97 2.82 -57.59 By element: Atomic # 1 Polarization: 37.39 SS G_CDS: 0.20 Total: 37.59 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 4.14 Total: 12.28 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -3.45 Total: -87.57 kcal Atomic # 8 Polarization: -59.85 SS G_CDS: -0.10 Total: -59.95 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -60.41 2.82 -57.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408167752.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.731 kcal (2) G-P(sol) polarization free energy of solvation -60.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds