Wall clock time and date at job start Tue Mar 31 2020 06:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.29617 * 2 1 4 4 C 1.52919 * 109.29805 * 119.58499 * 2 1 3 5 5 C 1.53345 * 108.67633 * 69.35534 * 4 2 1 6 6 H 1.08998 * 109.67244 * 307.79457 * 5 4 2 7 7 C 1.50705 * 109.66980 * 187.29820 * 5 4 2 8 8 O 1.21290 * 120.00239 * 334.59277 * 7 5 4 9 9 N 1.34775 * 119.99393 * 154.59406 * 7 5 4 10 10 C 1.37097 * 119.99672 * 183.57448 * 9 7 5 11 11 H 1.08005 * 119.99793 * 169.07290 * 10 9 7 12 12 C 1.38944 * 120.00461 * 349.07382 * 10 9 7 13 13 N 1.31409 * 120.00019 * 91.89180 * 12 10 9 14 14 Si 1.86801 * 119.99942 * 271.90080 * 12 10 9 15 15 H 1.48506 * 109.47113 * 89.99463 * 14 12 10 16 16 H 1.48499 * 109.46852 * 209.99339 * 14 12 10 17 17 H 1.48497 * 109.47117 * 329.99632 * 14 12 10 18 18 C 1.46498 * 120.00467 * 3.57310 * 9 7 5 19 19 C 1.54265 * 110.03702 * 242.69262 * 18 9 7 20 20 C 1.54963 * 104.16214 * 217.13978 * 19 18 9 21 21 C 1.54887 * 102.77910 * 37.88173 * 20 19 18 22 22 C 1.53879 * 110.03253 * 125.47142 * 18 9 7 23 23 C 1.53061 * 108.42493 * 67.52889 * 5 4 2 24 24 C 1.50178 * 109.89261 * 311.10014 * 23 5 4 25 25 O 1.21278 * 118.24425 * 197.60400 * 24 23 5 26 26 N 1.33350 * 123.50708 * 17.58060 * 24 23 5 27 27 H 1.08997 * 109.47370 * 299.99714 * 1 2 3 28 28 H 1.09002 * 109.47070 * 60.00161 * 1 2 3 29 29 H 1.09010 * 109.46956 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.60029 * 189.11447 * 4 2 1 31 31 H 1.09003 * 109.60553 * 309.43258 * 4 2 1 32 32 H 0.97005 * 120.00105 * 184.83966 * 13 12 10 33 33 H 1.09003 * 110.01774 * 4.08185 * 18 9 7 34 34 H 1.09009 * 110.48103 * 335.78067 * 19 18 9 35 35 H 1.08991 * 110.48894 * 98.42183 * 19 18 9 36 36 H 1.09001 * 110.71397 * 279.56896 * 20 19 18 37 37 H 1.09001 * 110.92909 * 156.29590 * 20 19 18 38 38 H 1.09003 * 110.48747 * 203.41011 * 21 20 19 39 39 H 1.08993 * 110.48791 * 80.76651 * 21 20 19 40 40 H 1.09001 * 110.03228 * 238.56924 * 22 18 9 41 41 H 1.08995 * 110.03070 * 0.02562 * 22 18 9 42 42 H 1.09002 * 109.40530 * 71.22724 * 23 5 4 43 43 H 1.09002 * 109.40255 * 190.96679 * 23 5 4 44 44 H 0.97003 * 117.94531 * 177.77748 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8902 1.0288 0.0000 4 6 2.0354 -0.7126 1.2551 5 6 1.7143 -2.2071 1.1342 6 1 0.6572 -2.3378 0.9028 7 6 2.0395 -2.9024 2.4311 8 8 2.8734 -2.4348 3.1774 9 7 1.4037 -4.0439 2.7615 10 6 1.6457 -4.6371 3.9735 11 1 1.0156 -5.4453 4.3146 12 6 2.7015 -4.1988 4.7632 13 7 2.5026 -3.2665 5.6677 14 14 4.4038 -4.9345 4.5390 15 1 5.1556 -4.1447 3.5307 16 1 5.1306 -4.9043 5.8336 17 1 4.2786 -6.3393 4.0742 18 6 0.4540 -4.6508 1.8256 19 6 -0.9576 -4.6764 2.4473 20 6 -1.5599 -6.0204 1.9651 21 6 -0.3455 -6.9801 2.0224 22 6 0.8430 -6.1148 1.5550 23 6 2.5652 -2.7950 0.0059 24 6 2.4543 -1.9341 -1.2196 25 8 2.7883 -2.4069 -2.2853 26 7 2.0077 -0.6777 -1.1987 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 3.1132 -0.5761 1.3441 31 1 1.5407 -0.2997 2.1343 32 1 3.2521 -2.9104 6.1702 33 1 0.4403 -4.0893 0.8913 34 1 -0.8956 -4.6549 3.5354 35 1 -1.5509 -3.8385 2.0814 36 1 -1.9341 -5.9313 0.9453 37 1 -2.3498 -6.3563 2.6369 38 1 -0.4929 -7.8226 1.3466 39 1 -0.1843 -7.3311 3.0416 40 1 1.0173 -6.2640 0.4894 41 1 1.7381 -6.3738 2.1204 42 1 3.6069 -2.8399 0.3236 43 1 2.2149 -3.8010 -0.2254 44 1 2.0005 -0.1839 -2.0335 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408167753.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:51 Heat of formation + Delta-G solvation = -58.364891 kcal Electronic energy + Delta-G solvation = -25817.285075 eV Core-core repulsion = 22348.860833 eV Total energy + Delta-G solvation = -3468.424242 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.42196 -38.84186 -37.08966 -36.28235 -33.45747 -32.80996 -31.86768 -30.81243 -28.14264 -27.06737 -26.91065 -25.52218 -23.25321 -22.20713 -20.22848 -19.99555 -19.29591 -18.47345 -17.11129 -16.55875 -16.09747 -15.95733 -15.02744 -14.91958 -14.56636 -14.34544 -14.05633 -13.87756 -13.53694 -13.15996 -13.04132 -12.77612 -12.59938 -12.24377 -12.10073 -11.84081 -11.43877 -11.36283 -11.01776 -10.97348 -10.83247 -10.64256 -10.59306 -10.56031 -10.44666 -10.34433 -10.11245 -9.96668 -9.84597 -9.68253 -9.01842 -8.65031 -8.04638 -7.40062 -6.79535 -3.26663 2.83008 3.39483 3.41393 3.55822 3.61934 4.09750 4.26743 4.70261 4.74226 4.81420 4.88051 5.06548 5.11852 5.14695 5.23296 5.41901 5.45793 5.52446 5.58452 5.67462 5.80040 5.83190 5.95965 6.00430 6.04008 6.09159 6.13028 6.14624 6.17556 6.22035 6.35663 6.39843 6.44133 6.53407 6.58632 6.77009 6.89336 6.94345 7.02078 7.41825 7.46394 8.12141 8.37421 8.88336 9.32098 9.65773 10.19856 10.36620 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012637 B = 0.007285 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.249106 B = 3842.841679 C = 4779.519578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.134 3.866 3 H 0.084 0.916 4 C -0.105 4.105 5 C -0.096 4.096 6 H 0.081 0.919 7 C 0.398 3.602 8 O -0.573 6.573 9 N -0.398 5.398 10 C -0.515 4.515 11 H 0.099 0.901 12 C 0.245 3.755 13 N -0.686 5.686 14 Si 0.776 3.224 15 H -0.268 1.268 16 H -0.295 1.295 17 H -0.271 1.271 18 C 0.131 3.869 19 C -0.132 4.132 20 C -0.123 4.123 21 C -0.118 4.118 22 C -0.132 4.132 23 C -0.126 4.126 24 C 0.526 3.474 25 O -0.567 6.567 26 N -0.715 5.715 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.275 0.725 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.955 3.376 -8.133 11.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.029 3.971 3 H 0.102 0.898 4 C -0.143 4.143 5 C -0.118 4.118 6 H 0.099 0.901 7 C 0.190 3.810 8 O -0.460 6.460 9 N -0.114 5.114 10 C -0.627 4.627 11 H 0.117 0.883 12 C 0.012 3.988 13 N -0.305 5.305 14 Si 0.594 3.406 15 H -0.193 1.193 16 H -0.222 1.222 17 H -0.196 1.196 18 C 0.025 3.975 19 C -0.170 4.170 20 C -0.161 4.161 21 C -0.155 4.155 22 C -0.171 4.171 23 C -0.166 4.166 24 C 0.314 3.686 25 O -0.447 6.447 26 N -0.367 5.367 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -6.482 3.348 -7.852 10.718 hybrid contribution 0.958 -0.109 -0.471 1.073 sum -5.524 3.240 -8.323 10.502 Atomic orbital electron populations 1.22322 0.95239 1.02905 1.02170 1.21074 0.94278 0.96390 0.85311 0.89819 1.21641 1.02788 0.93994 0.95896 1.21262 0.99679 0.95597 0.95261 0.90141 1.19261 0.89481 0.83573 0.88671 1.90481 1.36742 1.66185 1.52564 1.43544 1.34822 1.18902 1.14124 1.17812 1.21681 1.25790 0.97435 0.88308 1.24638 0.98127 0.88134 0.87930 1.70857 1.34740 1.13756 1.11143 0.88542 0.91161 0.82046 0.78864 1.19334 1.22157 1.19596 1.21657 0.89682 0.93905 0.92244 1.22746 0.95231 0.96032 1.02981 1.22456 0.97366 0.96070 1.00172 1.22268 0.94842 0.97205 1.01219 1.22464 0.99949 0.94641 1.00014 1.21683 1.03709 0.99286 0.91896 1.20314 0.75383 0.81912 0.90958 1.90715 1.50337 1.71946 1.31698 1.45591 1.65184 1.13880 1.12022 0.91109 0.92600 0.91891 0.90430 0.89384 0.91336 0.90935 0.89449 0.92749 0.92336 0.92216 0.92704 0.91481 0.92814 0.89387 0.87861 0.88292 0.77200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 9.29 37.16 0.35 -1.38 16 2 C 0.13 1.56 3.84 -68.37 -0.26 1.29 16 3 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 4 C -0.11 -1.62 4.17 -26.59 -0.11 -1.73 16 5 C -0.10 -1.67 1.64 -91.56 -0.15 -1.82 16 6 H 0.08 1.29 4.78 -51.93 -0.25 1.04 16 7 C 0.40 9.13 6.69 -10.98 -0.07 9.06 16 8 O -0.57 -15.37 12.59 5.55 0.07 -15.30 16 9 N -0.40 -9.03 2.58 -106.54 -0.28 -9.31 16 10 C -0.52 -13.24 7.49 -14.94 -0.11 -13.35 16 11 H 0.10 2.57 7.65 -52.48 -0.40 2.17 16 12 C 0.25 6.58 2.97 -17.47 -0.05 6.53 16 13 N -0.69 -18.66 13.27 55.50 0.74 -17.93 16 14 Si 0.78 19.81 28.78 -169.99 -4.89 14.92 16 15 H -0.27 -7.31 7.11 56.52 0.40 -6.91 16 16 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 17 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 18 C 0.13 2.38 2.98 -66.81 -0.20 2.18 16 19 C -0.13 -2.18 6.40 -25.03 -0.16 -2.34 16 20 C -0.12 -1.70 6.91 -24.70 -0.17 -1.87 16 21 C -0.12 -1.75 6.83 -25.07 -0.17 -1.92 16 22 C -0.13 -2.27 6.24 -25.61 -0.16 -2.43 16 23 C -0.13 -2.14 5.21 -28.10 -0.15 -2.29 16 24 C 0.53 8.59 7.71 -11.87 -0.09 8.49 16 25 O -0.57 -11.04 17.78 5.56 0.10 -10.94 16 26 N -0.72 -9.18 5.02 -54.86 -0.28 -9.45 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.72 6.52 -51.92 -0.34 0.38 16 30 H 0.08 1.31 8.09 -51.93 -0.42 0.89 16 31 H 0.09 1.41 8.12 -51.93 -0.42 0.99 16 32 H 0.28 7.05 8.32 -40.82 -0.34 6.72 16 33 H 0.07 1.20 4.77 -51.93 -0.25 0.96 16 34 H 0.09 1.70 6.99 -51.92 -0.36 1.34 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.09 1.76 7.16 -51.93 -0.37 1.39 16 42 H 0.10 1.91 8.10 -51.93 -0.42 1.49 16 43 H 0.10 1.66 7.31 -51.93 -0.38 1.28 16 44 H 0.39 4.35 8.80 -40.82 -0.36 3.99 16 LS Contribution 339.60 15.07 5.12 5.12 Total: -1.00 -31.31 339.60 -7.85 -39.16 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.91 Total: 5.32 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -1.51 Total: -1.59 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.19 Total: -36.69 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: 0.17 Total: -26.24 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.89 Total: 14.92 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.31 -7.85 -39.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408167753.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.204 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds