Wall clock time and date at job start Tue Mar 31 2020 06:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.29617 * 2 1 4 4 C 1.52919 * 109.29805 * 119.58499 * 2 1 3 5 5 C 1.53345 * 108.67633 * 69.35534 * 4 2 1 6 6 H 1.08998 * 109.67244 * 307.79457 * 5 4 2 7 7 C 1.50705 * 109.66980 * 187.29820 * 5 4 2 8 8 O 1.21290 * 120.00239 * 334.59277 * 7 5 4 9 9 N 1.34775 * 119.99393 * 154.59406 * 7 5 4 10 10 C 1.37097 * 119.99672 * 183.57448 * 9 7 5 11 11 H 1.08005 * 119.99793 * 169.07290 * 10 9 7 12 12 C 1.38944 * 120.00461 * 349.07382 * 10 9 7 13 13 N 1.31409 * 120.00019 * 91.89180 * 12 10 9 14 14 Si 1.86801 * 119.99942 * 271.90080 * 12 10 9 15 15 H 1.48506 * 109.47113 * 89.99463 * 14 12 10 16 16 H 1.48499 * 109.46852 * 209.99339 * 14 12 10 17 17 H 1.48497 * 109.47117 * 329.99632 * 14 12 10 18 18 C 1.46498 * 120.00467 * 3.57310 * 9 7 5 19 19 C 1.54265 * 110.03702 * 242.69262 * 18 9 7 20 20 C 1.54963 * 104.16214 * 217.13978 * 19 18 9 21 21 C 1.54887 * 102.77910 * 37.88173 * 20 19 18 22 22 C 1.53879 * 110.03253 * 125.47142 * 18 9 7 23 23 C 1.53061 * 108.42493 * 67.52889 * 5 4 2 24 24 C 1.50178 * 109.89261 * 311.10014 * 23 5 4 25 25 O 1.21278 * 118.24425 * 197.60400 * 24 23 5 26 26 N 1.33350 * 123.50708 * 17.58060 * 24 23 5 27 27 H 1.08997 * 109.47370 * 299.99714 * 1 2 3 28 28 H 1.09002 * 109.47070 * 60.00161 * 1 2 3 29 29 H 1.09010 * 109.46956 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.60029 * 189.11447 * 4 2 1 31 31 H 1.09003 * 109.60553 * 309.43258 * 4 2 1 32 32 H 0.97005 * 120.00105 * 184.83966 * 13 12 10 33 33 H 1.09003 * 110.01774 * 4.08185 * 18 9 7 34 34 H 1.09009 * 110.48103 * 335.78067 * 19 18 9 35 35 H 1.08991 * 110.48894 * 98.42183 * 19 18 9 36 36 H 1.09001 * 110.71397 * 279.56896 * 20 19 18 37 37 H 1.09001 * 110.92909 * 156.29590 * 20 19 18 38 38 H 1.09003 * 110.48747 * 203.41011 * 21 20 19 39 39 H 1.08993 * 110.48791 * 80.76651 * 21 20 19 40 40 H 1.09001 * 110.03228 * 238.56924 * 22 18 9 41 41 H 1.08995 * 110.03070 * 0.02562 * 22 18 9 42 42 H 1.09002 * 109.40530 * 71.22724 * 23 5 4 43 43 H 1.09002 * 109.40255 * 190.96679 * 23 5 4 44 44 H 0.97003 * 117.94531 * 177.77748 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8902 1.0288 0.0000 4 6 2.0354 -0.7126 1.2551 5 6 1.7143 -2.2071 1.1342 6 1 0.6572 -2.3378 0.9028 7 6 2.0395 -2.9024 2.4311 8 8 2.8734 -2.4348 3.1774 9 7 1.4037 -4.0439 2.7615 10 6 1.6457 -4.6371 3.9735 11 1 1.0156 -5.4453 4.3146 12 6 2.7015 -4.1988 4.7632 13 7 2.5026 -3.2665 5.6677 14 14 4.4038 -4.9345 4.5390 15 1 5.1556 -4.1447 3.5307 16 1 5.1306 -4.9043 5.8336 17 1 4.2786 -6.3393 4.0742 18 6 0.4540 -4.6508 1.8256 19 6 -0.9576 -4.6764 2.4473 20 6 -1.5599 -6.0204 1.9651 21 6 -0.3455 -6.9801 2.0224 22 6 0.8430 -6.1148 1.5550 23 6 2.5652 -2.7950 0.0059 24 6 2.4543 -1.9341 -1.2196 25 8 2.7883 -2.4069 -2.2853 26 7 2.0077 -0.6777 -1.1987 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 3.1132 -0.5761 1.3441 31 1 1.5407 -0.2997 2.1343 32 1 3.2521 -2.9104 6.1702 33 1 0.4403 -4.0893 0.8913 34 1 -0.8956 -4.6549 3.5354 35 1 -1.5509 -3.8385 2.0814 36 1 -1.9341 -5.9313 0.9453 37 1 -2.3498 -6.3563 2.6369 38 1 -0.4929 -7.8226 1.3466 39 1 -0.1843 -7.3311 3.0416 40 1 1.0173 -6.2640 0.4894 41 1 1.7381 -6.3738 2.1204 42 1 3.6069 -2.8399 0.3236 43 1 2.2149 -3.8010 -0.2254 44 1 2.0005 -0.1839 -2.0335 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408167753.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:50 Heat of formation + Delta-G solvation = -78.782058 kcal Electronic energy + Delta-G solvation = -25818.170429 eV Core-core repulsion = 22348.860833 eV Total energy + Delta-G solvation = -3469.309596 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.77472 -40.39455 -38.51192 -37.67672 -35.28045 -34.41165 -33.58032 -31.93788 -29.44644 -28.57645 -28.07597 -27.17865 -24.77675 -23.42512 -21.62077 -21.41989 -20.90535 -19.73243 -18.63796 -17.95972 -17.70033 -17.25628 -16.65783 -16.35506 -16.29905 -15.73946 -15.49768 -15.18645 -14.98854 -14.62901 -14.32582 -14.26681 -14.06425 -14.01592 -13.37872 -13.11947 -12.95558 -12.82420 -12.69856 -12.41920 -12.35006 -12.18322 -12.04851 -11.87155 -11.83121 -11.78064 -11.71997 -11.34864 -11.27025 -11.08105 -10.63244 -10.12852 -9.85913 -9.37567 -8.87698 -5.27401 1.28618 1.46002 1.49324 1.53202 2.19541 2.28846 2.37078 2.70078 3.15058 3.56048 3.71973 3.74953 3.82676 3.85180 4.01353 4.17165 4.23915 4.29959 4.33953 4.46366 4.57546 4.67655 4.70729 4.77717 4.80127 4.82064 4.95188 4.96369 5.00590 5.08348 5.13515 5.18650 5.23802 5.30651 5.37629 5.42798 5.48232 5.59181 5.63876 5.85574 6.17790 6.26691 6.89945 7.16766 7.40917 7.75017 8.14413 8.50952 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012637 B = 0.007285 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.249106 B = 3842.841679 C = 4779.519578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.142 3.858 3 H 0.117 0.883 4 C -0.104 4.104 5 C -0.083 4.083 6 H 0.102 0.898 7 C 0.388 3.612 8 O -0.617 6.617 9 N -0.407 5.407 10 C -0.528 4.528 11 H 0.089 0.911 12 C 0.234 3.766 13 N -0.705 5.705 14 Si 0.797 3.203 15 H -0.296 1.296 16 H -0.287 1.287 17 H -0.269 1.269 18 C 0.122 3.878 19 C -0.129 4.129 20 C -0.111 4.111 21 C -0.115 4.115 22 C -0.133 4.133 23 C -0.122 4.122 24 C 0.532 3.468 25 O -0.600 6.600 26 N -0.698 5.698 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.279 0.721 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.082 0.918 43 H 0.101 0.899 44 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.126 4.195 -10.353 14.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.135 0.865 4 C -0.143 4.143 5 C -0.105 4.105 6 H 0.120 0.880 7 C 0.181 3.819 8 O -0.507 6.507 9 N -0.123 5.123 10 C -0.640 4.640 11 H 0.106 0.894 12 C 0.002 3.998 13 N -0.325 5.325 14 Si 0.616 3.384 15 H -0.224 1.224 16 H -0.214 1.214 17 H -0.194 1.194 18 C 0.018 3.982 19 C -0.167 4.167 20 C -0.148 4.148 21 C -0.153 4.153 22 C -0.171 4.171 23 C -0.162 4.162 24 C 0.319 3.681 25 O -0.483 6.483 26 N -0.349 5.349 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.120 0.880 44 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -8.697 4.172 -10.063 13.939 hybrid contribution 1.638 -0.322 0.232 1.685 sum -7.059 3.850 -9.831 12.700 Atomic orbital electron populations 1.22304 0.93428 1.02740 1.03857 1.21169 0.95509 0.96958 0.82572 0.86502 1.21618 1.01687 0.92915 0.98035 1.21156 1.00839 0.96311 0.92179 0.87990 1.20249 0.88299 0.83361 0.89996 1.90446 1.38476 1.67317 1.54458 1.43727 1.35553 1.19060 1.13940 1.17753 1.21510 1.25814 0.98911 0.89351 1.24950 0.99213 0.87943 0.87687 1.70893 1.35258 1.14504 1.11801 0.88160 0.90604 0.81344 0.78242 1.22365 1.21355 1.19403 1.22010 0.89541 0.94547 0.92135 1.22684 0.94691 0.98726 1.00641 1.22430 0.96912 0.93568 1.01931 1.22258 0.94327 0.97984 1.00722 1.22450 0.99408 0.94396 1.00863 1.21572 1.02339 0.99998 0.92291 1.19980 0.75555 0.82770 0.89746 1.90709 1.52181 1.72939 1.32433 1.45466 1.63523 1.12654 1.13214 0.90212 0.90214 0.92954 0.92454 0.90024 0.90934 0.88971 0.93040 0.90858 0.89585 0.90942 0.90002 0.93363 0.90585 0.93049 0.90002 0.88041 0.75464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 9.29 71.98 0.67 -2.03 16 2 C 0.14 2.80 3.84 45.11 0.17 2.97 16 3 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 4 C -0.10 -3.08 4.17 30.68 0.13 -2.96 16 5 C -0.08 -2.82 1.64 -11.40 -0.02 -2.84 16 6 H 0.10 3.03 4.78 -2.39 -0.01 3.02 16 7 C 0.39 18.05 6.69 87.66 0.59 18.64 16 8 O -0.62 -34.13 12.59 -3.06 -0.04 -34.17 16 9 N -0.41 -18.73 2.58 -609.37 -1.57 -20.31 16 10 C -0.53 -27.94 7.49 84.04 0.63 -27.31 16 11 H 0.09 4.80 7.65 -2.91 -0.02 4.77 16 12 C 0.23 12.95 2.97 84.93 0.25 13.20 16 13 N -0.70 -39.37 13.27 21.66 0.29 -39.09 16 14 Si 0.80 41.78 28.78 68.60 1.97 43.76 16 15 H -0.30 -16.87 7.11 99.48 0.71 -16.16 16 16 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 17 H -0.27 -13.86 7.11 99.48 0.71 -13.15 16 18 C 0.12 4.30 2.98 45.72 0.14 4.44 16 19 C -0.13 -4.08 6.40 31.69 0.20 -3.87 16 20 C -0.11 -2.73 6.91 31.91 0.22 -2.51 16 21 C -0.12 -3.21 6.83 31.67 0.22 -2.99 16 22 C -0.13 -4.43 6.24 31.32 0.20 -4.23 16 23 C -0.12 -4.08 5.21 29.70 0.15 -3.92 16 24 C 0.53 16.38 7.71 87.71 0.68 17.06 16 25 O -0.60 -22.45 17.78 -3.02 -0.05 -22.50 16 26 N -0.70 -15.70 5.02 -446.65 -2.24 -17.94 16 27 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 0.98 6.52 -2.38 -0.02 0.97 16 30 H 0.06 1.93 8.09 -2.39 -0.02 1.91 16 31 H 0.08 2.54 8.12 -2.39 -0.02 2.52 16 32 H 0.28 14.71 8.32 -92.70 -0.77 13.93 16 33 H 0.09 2.85 4.77 -2.39 -0.01 2.84 16 34 H 0.05 2.01 6.99 -2.38 -0.02 1.99 16 35 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.05 2.09 7.16 -2.39 -0.02 2.08 16 42 H 0.08 3.11 8.10 -2.39 -0.02 3.09 16 43 H 0.10 3.31 7.31 -2.39 -0.02 3.30 16 44 H 0.41 7.47 8.80 -92.71 -0.82 6.65 16 Total: -1.00 -70.88 339.60 2.76 -68.11 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.19 Total: 18.49 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 4.22 Total: 3.65 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: -3.53 Total: -77.34 kcal Atomic # 8 Polarization: -56.58 SS G_CDS: -0.09 Total: -56.67 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.97 Total: 43.76 kcal Total: -70.88 2.76 -68.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408167753.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.668 kcal (2) G-P(sol) polarization free energy of solvation -70.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds