Wall clock time and date at job start Tue Mar 31 2020 07:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46830 * 2 1 4 4 C 1.53006 * 109.46722 * 240.00814 * 2 1 3 5 5 C 1.50697 * 109.47083 * 174.99796 * 4 2 1 6 6 H 1.08004 * 119.99947 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00155 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99987 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00336 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47107 * 59.99663 * 9 7 5 11 11 H 1.48496 * 109.47546 * 180.02562 * 9 7 5 12 12 H 1.48510 * 109.46767 * 300.00109 * 9 7 5 13 13 N 1.46899 * 109.47594 * 120.00944 * 2 1 3 14 14 C 1.46954 * 110.99985 * 58.79498 * 13 2 1 15 15 C 1.53054 * 109.35961 * 176.81311 * 14 13 2 16 16 N 1.46957 * 109.36379 * 58.40683 * 15 14 13 17 17 C 1.46900 * 110.99836 * 176.81159 * 16 15 14 18 18 H 1.09000 * 109.47450 * 75.40646 * 17 16 15 19 19 C 1.53002 * 109.47136 * 315.40182 * 17 16 15 20 20 C 1.52998 * 109.46866 * 195.40788 * 17 16 15 21 21 F 1.39897 * 109.47537 * 54.28035 * 20 17 16 22 22 F 1.39906 * 109.47025 * 174.28055 * 20 17 16 23 23 F 1.39899 * 109.47257 * 294.27990 * 20 17 16 24 24 C 1.46958 * 110.87669 * 300.67487 * 16 15 14 25 25 C 1.46956 * 110.99658 * 294.99486 * 13 2 1 26 26 H 1.09000 * 109.47009 * 299.99142 * 1 2 3 27 27 H 1.08998 * 109.47714 * 59.99102 * 1 2 3 28 28 H 1.09008 * 109.46908 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47245 * 54.99583 * 4 2 1 30 30 H 1.09003 * 109.46997 * 294.99912 * 4 2 1 31 31 H 0.96995 * 120.00107 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.49013 * 296.77647 * 14 13 2 33 33 H 1.08998 * 109.48828 * 56.84734 * 14 13 2 34 34 H 1.08998 * 109.48982 * 298.43505 * 15 14 13 35 35 H 1.09001 * 109.50321 * 178.37743 * 15 14 13 36 36 H 1.08998 * 109.47440 * 179.97438 * 19 17 16 37 37 H 1.09000 * 109.47330 * 300.00537 * 19 17 16 38 38 H 1.09011 * 109.46782 * 60.00221 * 19 17 16 39 39 H 1.09004 * 109.48991 * 299.35317 * 24 16 15 40 40 H 1.09008 * 109.50519 * 179.30526 * 24 16 15 41 41 H 1.08997 * 109.49466 * 303.15939 * 25 13 2 42 42 H 1.09008 * 109.48943 * 63.19943 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5417 -0.6148 -1.3130 6 1 4.0788 -0.0854 -0.5398 7 6 4.2302 -1.1932 -2.3581 8 7 3.5762 -1.8374 -3.2999 9 14 6.0920 -1.0621 -2.4366 10 1 6.6837 -1.6881 -1.2270 11 1 6.5869 -1.7618 -3.6493 12 1 6.4853 0.3688 -2.4961 13 7 2.0197 -0.6927 1.1993 14 6 1.5252 -2.0756 1.2475 15 6 2.1203 -2.7851 2.4662 16 7 1.7492 -2.0533 3.6854 17 6 2.2390 -2.7459 4.8847 18 1 3.3131 -2.5879 4.9824 19 6 1.9530 -4.2438 4.7612 20 6 1.5275 -2.1911 6.1203 21 9 0.1429 -2.2753 5.9383 22 9 1.8962 -2.9370 7.2450 23 9 1.8926 -0.8536 6.3076 24 6 2.2437 -0.6702 3.6370 25 6 1.6488 0.0392 2.4185 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 1.6052 -0.2615 -2.1370 30 1 1.7515 -1.7714 -1.2059 31 1 4.0605 -2.2447 -4.0350 32 1 0.4380 -2.0706 1.3248 33 1 1.8232 -2.6003 0.3398 34 1 3.2062 -2.8141 2.3758 35 1 1.7325 -3.8023 2.5205 36 1 2.3168 -4.7578 5.6508 37 1 0.8790 -4.4018 4.6635 38 1 2.4600 -4.6391 3.8808 39 1 3.3310 -0.6753 3.5599 40 1 1.9460 -0.1453 4.5448 41 1 2.0368 1.0563 2.3644 42 1 0.5628 0.0686 2.5087 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411338332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:49 Heat of formation + Delta-G solvation = -139.883551 kcal Electronic energy + Delta-G solvation = -25630.376951 eV Core-core repulsion = 21616.561054 eV Total energy + Delta-G solvation = -4013.815896 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.19003 -47.76482 -47.56649 -39.46738 -36.84756 -33.32647 -32.06837 -30.75083 -29.68714 -27.31678 -26.72730 -25.15983 -23.38279 -22.93807 -21.39914 -20.22727 -18.90551 -18.52048 -18.33482 -17.52238 -16.22229 -16.13579 -15.11689 -14.89531 -14.61542 -14.56141 -14.40187 -14.35000 -14.09986 -13.95249 -13.80269 -13.70480 -13.57900 -13.19433 -12.96636 -12.46224 -12.25350 -11.98166 -11.83851 -11.64466 -11.49437 -11.32845 -11.14238 -10.92192 -10.62186 -10.60220 -10.39433 -10.23612 -9.88115 -9.15975 -9.00804 -8.52342 -8.28017 -7.48856 -5.91309 -3.89381 2.60911 3.38060 3.42317 3.44564 3.45541 3.70910 3.90723 4.33597 4.51165 4.55052 4.72978 4.83699 5.02148 5.31668 5.34875 5.44814 5.45470 5.52036 5.60449 5.70835 5.75640 5.79899 5.85295 5.97757 5.98992 6.06678 6.19279 6.33526 6.43019 6.58836 6.68677 6.78436 6.95299 6.97760 7.52062 7.66252 7.88181 7.99613 8.10293 8.55505 9.16528 9.72479 11.20485 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.022040 B = 0.004179 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.102368 B = 6698.390103 C = 7162.017825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.070 0.930 4 C 0.029 3.971 5 C -0.491 4.491 6 H 0.059 0.941 7 C 0.052 3.948 8 N -0.903 5.903 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.513 5.513 14 C 0.057 3.943 15 C 0.058 3.942 16 N -0.529 5.529 17 C 0.038 3.962 18 H 0.084 0.916 19 C -0.158 4.158 20 C 0.459 3.541 21 F -0.172 7.172 22 F -0.186 7.186 23 F -0.183 7.183 24 C 0.038 3.962 25 C 0.056 3.944 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.019 0.981 30 H 0.020 0.980 31 H 0.258 0.742 32 H 0.035 0.965 33 H 0.098 0.902 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.048 0.952 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.896 -2.491 17.703 18.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.021 4.021 3 H 0.088 0.912 4 C -0.008 4.008 5 C -0.530 4.530 6 H 0.077 0.923 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.237 5.237 14 C -0.071 4.071 15 C -0.069 4.069 16 N -0.255 5.255 17 C -0.073 4.073 18 H 0.102 0.898 19 C -0.215 4.215 20 C 0.404 3.596 21 F -0.153 7.153 22 F -0.168 7.168 23 F -0.164 7.164 24 C -0.090 4.090 25 C -0.073 4.073 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.066 0.934 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.870 -2.571 17.552 18.395 hybrid contribution 0.939 0.205 0.126 0.970 sum -3.931 -2.366 17.677 18.263 Atomic orbital electron populations 1.22510 0.99669 1.01366 1.00711 1.21900 0.90137 0.98406 0.91638 0.91221 1.19223 0.96324 0.95335 0.89918 1.21130 0.91790 1.33072 1.07013 0.92262 1.24996 0.97928 0.95888 0.95964 1.69949 1.35298 1.36838 1.12334 0.86707 0.86437 0.78030 0.77032 1.20497 1.21647 1.20502 1.62314 1.58879 1.01384 1.01099 1.22183 0.96865 0.90545 0.97488 1.22377 0.99599 0.97164 0.87772 1.62165 1.59367 1.02951 1.00978 1.22688 0.98330 0.96977 0.89286 0.89780 1.22038 1.04232 0.91248 1.03986 1.20582 0.78289 0.75489 0.85196 1.93185 1.31045 1.95840 1.95255 1.93159 1.91511 1.76699 1.55390 1.93088 1.91535 1.36227 1.95586 1.22643 0.98590 0.88012 0.99712 1.22105 0.98075 0.97354 0.89763 0.93979 0.92609 0.92885 0.96325 0.96217 0.93247 0.94670 0.88376 0.93171 0.89907 0.90885 0.90402 0.89671 0.93419 0.89358 0.90687 0.94503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.14 8.49 37.16 0.32 -2.82 16 2 C 0.09 1.73 2.30 -67.71 -0.16 1.57 16 3 H 0.07 1.42 8.11 -51.93 -0.42 1.00 16 4 C 0.03 0.71 4.27 -27.88 -0.12 0.60 16 5 C -0.49 -13.43 8.84 -34.44 -0.30 -13.74 16 6 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -26.69 13.29 55.43 0.74 -25.96 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.51 -9.41 4.41 -226.49 -1.00 -10.41 16 14 C 0.06 0.98 4.82 -3.77 -0.02 0.96 16 15 C 0.06 0.81 4.87 -3.76 -0.02 0.80 16 16 N -0.53 -6.95 4.40 -226.48 -1.00 -7.94 16 17 C 0.04 0.41 2.26 -67.71 -0.15 0.26 16 18 H 0.08 0.86 8.06 -51.93 -0.42 0.44 16 19 C -0.16 -1.42 8.13 37.16 0.30 -1.12 16 20 C 0.46 5.25 2.78 37.16 0.10 5.36 16 21 F -0.17 -2.19 16.84 2.25 0.04 -2.15 16 22 F -0.19 -2.04 16.58 2.25 0.04 -2.00 16 23 F -0.18 -2.22 14.41 2.25 0.03 -2.18 16 24 C 0.04 0.52 5.29 -3.77 -0.02 0.50 16 25 C 0.06 0.86 5.25 -3.77 -0.02 0.84 16 26 H 0.04 0.65 6.59 -51.93 -0.34 0.31 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.91 6.46 -51.92 -0.34 0.57 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.02 0.51 6.12 -51.93 -0.32 0.19 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 32 H 0.04 0.59 6.47 -51.93 -0.34 0.25 16 33 H 0.10 1.93 6.07 -51.93 -0.32 1.61 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.00 6.00 -51.93 -0.31 0.68 16 36 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16 37 H 0.08 0.73 7.96 -51.93 -0.41 0.31 16 38 H 0.08 0.73 6.27 -51.92 -0.33 0.40 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.14 5.34 -51.92 -0.28 0.86 16 41 H 0.07 1.12 8.12 -51.93 -0.42 0.70 16 42 H 0.04 0.57 6.60 -51.92 -0.34 0.23 16 LS Contribution 327.98 15.07 4.94 4.94 Total: -1.00 -29.06 327.98 -7.62 -36.68 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -6.21 Total: -2.24 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -0.18 Total: -5.43 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: -1.26 Total: -44.31 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.11 Total: -6.33 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.06 -7.62 -36.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411338332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.202 kcal (2) G-P(sol) polarization free energy of solvation -29.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds