Wall clock time and date at job start Tue Mar 31 2020 07:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46830 * 2 1 4 4 C 1.53006 * 109.46722 * 240.00814 * 2 1 3 5 5 C 1.50697 * 109.47083 * 174.99796 * 4 2 1 6 6 H 1.08004 * 119.99947 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00155 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99987 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00336 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47107 * 59.99663 * 9 7 5 11 11 H 1.48496 * 109.47546 * 180.02562 * 9 7 5 12 12 H 1.48510 * 109.46767 * 300.00109 * 9 7 5 13 13 N 1.46899 * 109.47594 * 120.00944 * 2 1 3 14 14 C 1.46954 * 110.99985 * 58.79498 * 13 2 1 15 15 C 1.53054 * 109.35961 * 176.81311 * 14 13 2 16 16 N 1.46957 * 109.36379 * 58.40683 * 15 14 13 17 17 C 1.46900 * 110.99836 * 176.81159 * 16 15 14 18 18 H 1.09000 * 109.47450 * 75.40646 * 17 16 15 19 19 C 1.53002 * 109.47136 * 315.40182 * 17 16 15 20 20 C 1.52998 * 109.46866 * 195.40788 * 17 16 15 21 21 F 1.39897 * 109.47537 * 54.28035 * 20 17 16 22 22 F 1.39906 * 109.47025 * 174.28055 * 20 17 16 23 23 F 1.39899 * 109.47257 * 294.27990 * 20 17 16 24 24 C 1.46958 * 110.87669 * 300.67487 * 16 15 14 25 25 C 1.46956 * 110.99658 * 294.99486 * 13 2 1 26 26 H 1.09000 * 109.47009 * 299.99142 * 1 2 3 27 27 H 1.08998 * 109.47714 * 59.99102 * 1 2 3 28 28 H 1.09008 * 109.46908 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47245 * 54.99583 * 4 2 1 30 30 H 1.09003 * 109.46997 * 294.99912 * 4 2 1 31 31 H 0.96995 * 120.00107 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.49013 * 296.77647 * 14 13 2 33 33 H 1.08998 * 109.48828 * 56.84734 * 14 13 2 34 34 H 1.08998 * 109.48982 * 298.43505 * 15 14 13 35 35 H 1.09001 * 109.50321 * 178.37743 * 15 14 13 36 36 H 1.08998 * 109.47440 * 179.97438 * 19 17 16 37 37 H 1.09000 * 109.47330 * 300.00537 * 19 17 16 38 38 H 1.09011 * 109.46782 * 60.00221 * 19 17 16 39 39 H 1.09004 * 109.48991 * 299.35317 * 24 16 15 40 40 H 1.09008 * 109.50519 * 179.30526 * 24 16 15 41 41 H 1.08997 * 109.49466 * 303.15939 * 25 13 2 42 42 H 1.09008 * 109.48943 * 63.19943 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5417 -0.6148 -1.3130 6 1 4.0788 -0.0854 -0.5398 7 6 4.2302 -1.1932 -2.3581 8 7 3.5762 -1.8374 -3.2999 9 14 6.0920 -1.0621 -2.4366 10 1 6.6837 -1.6881 -1.2270 11 1 6.5869 -1.7618 -3.6493 12 1 6.4853 0.3688 -2.4961 13 7 2.0197 -0.6927 1.1993 14 6 1.5252 -2.0756 1.2475 15 6 2.1203 -2.7851 2.4662 16 7 1.7492 -2.0533 3.6854 17 6 2.2390 -2.7459 4.8847 18 1 3.3131 -2.5879 4.9824 19 6 1.9530 -4.2438 4.7612 20 6 1.5275 -2.1911 6.1203 21 9 0.1429 -2.2753 5.9383 22 9 1.8962 -2.9370 7.2450 23 9 1.8926 -0.8536 6.3076 24 6 2.2437 -0.6702 3.6370 25 6 1.6488 0.0392 2.4185 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 1.6052 -0.2615 -2.1370 30 1 1.7515 -1.7714 -1.2059 31 1 4.0605 -2.2447 -4.0350 32 1 0.4380 -2.0706 1.3248 33 1 1.8232 -2.6003 0.3398 34 1 3.2062 -2.8141 2.3758 35 1 1.7325 -3.8023 2.5205 36 1 2.3168 -4.7578 5.6508 37 1 0.8790 -4.4018 4.6635 38 1 2.4600 -4.6391 3.8808 39 1 3.3310 -0.6753 3.5599 40 1 1.9460 -0.1453 4.5448 41 1 2.0368 1.0563 2.3644 42 1 0.5628 0.0686 2.5087 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411338332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:49 Heat of formation + Delta-G solvation = -158.359246 kcal Electronic energy + Delta-G solvation = -25631.178117 eV Core-core repulsion = 21616.561054 eV Total energy + Delta-G solvation = -4014.617063 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.09687 -48.66407 -48.49253 -40.70185 -38.13236 -35.08204 -33.60997 -31.96486 -31.03591 -29.13613 -27.63174 -26.41023 -25.07145 -24.35893 -22.40688 -21.59991 -20.14490 -19.44361 -19.42272 -18.47913 -18.30881 -17.32348 -16.54862 -16.28126 -15.96847 -15.71997 -15.60559 -15.38301 -15.28571 -14.94116 -14.83823 -14.73129 -14.62856 -14.51005 -14.22154 -13.84221 -13.65021 -13.45381 -13.08590 -12.90730 -12.83401 -12.66493 -12.52463 -12.41068 -12.33716 -12.08891 -11.91614 -11.67726 -11.42839 -11.08682 -10.91082 -10.45077 -9.58361 -8.91314 -8.08146 -6.12832 1.43114 1.44670 1.52424 1.70729 2.46034 2.48402 2.82039 3.04376 3.12125 3.29083 3.42824 3.85027 3.88410 4.04844 4.10261 4.27226 4.37713 4.40890 4.44416 4.45897 4.59521 4.62266 4.66706 4.75828 4.85560 4.92740 4.99679 5.06654 5.09460 5.17859 5.22753 5.31825 5.51585 5.68609 5.78816 5.82188 5.91972 6.33590 6.43974 6.53258 7.00609 7.52985 9.03509 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.022040 B = 0.004179 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.102368 B = 6698.390103 C = 7162.017825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.095 3.905 3 H 0.063 0.937 4 C 0.036 3.964 5 C -0.499 4.499 6 H 0.056 0.944 7 C -0.001 4.001 8 N -0.939 5.939 9 Si 0.954 3.046 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.530 5.530 14 C 0.061 3.939 15 C 0.068 3.932 16 N -0.532 5.532 17 C 0.038 3.962 18 H 0.095 0.905 19 C -0.156 4.156 20 C 0.461 3.539 21 F -0.180 7.180 22 F -0.181 7.181 23 F -0.187 7.187 24 C 0.043 3.957 25 C 0.058 3.942 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.050 0.950 29 H -0.010 1.010 30 H 0.002 0.998 31 H 0.258 0.742 32 H 0.039 0.961 33 H 0.064 0.936 34 H 0.039 0.961 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.041 0.959 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.451 -2.600 19.593 20.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.013 4.013 3 H 0.082 0.918 4 C -0.001 4.001 5 C -0.537 4.537 6 H 0.074 0.926 7 C -0.197 4.197 8 N -0.581 5.581 9 Si 0.780 3.220 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.255 5.255 14 C -0.067 4.067 15 C -0.059 4.059 16 N -0.258 5.258 17 C -0.072 4.072 18 H 0.113 0.887 19 C -0.213 4.213 20 C 0.407 3.593 21 F -0.161 7.161 22 F -0.163 7.163 23 F -0.169 7.169 24 C -0.084 4.084 25 C -0.070 4.070 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.008 0.992 30 H 0.020 0.980 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.124 0.876 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.059 0.941 40 H 0.119 0.881 41 H 0.098 0.902 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.429 -2.673 19.466 20.142 hybrid contribution 0.772 0.243 -0.429 0.916 sum -3.656 -2.430 19.037 19.536 Atomic orbital electron populations 1.22364 0.97386 1.01562 1.01805 1.21599 0.91908 0.97292 0.90526 0.91830 1.19070 0.95166 0.94555 0.91331 1.21425 0.93196 1.32426 1.06670 0.92587 1.25795 1.02563 0.95675 0.95713 1.70079 1.37062 1.37920 1.13007 0.85676 0.80931 0.78246 0.77149 1.19737 1.21399 1.19767 1.62224 1.59595 1.02104 1.01546 1.22072 0.97171 0.89892 0.97574 1.22250 0.98674 0.97953 0.87057 1.62100 1.59609 1.02730 1.01367 1.22791 0.98747 0.97830 0.87829 0.88722 1.22059 1.04249 0.89875 1.05072 1.20620 0.77907 0.75326 0.85489 1.93173 1.31751 1.95863 1.95318 1.93169 1.91420 1.76535 1.55178 1.93077 1.91523 1.36650 1.95615 1.22589 0.98035 0.88532 0.99273 1.22145 0.98421 0.97494 0.88964 0.91774 0.92557 0.93111 0.99159 0.98027 0.93290 0.94283 0.91721 0.94317 0.87631 0.89229 0.90617 0.89194 0.94083 0.88056 0.90248 0.94128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.78 8.49 71.98 0.61 -5.17 16 2 C 0.09 3.80 2.30 44.92 0.10 3.90 16 3 H 0.06 2.60 8.11 -2.39 -0.02 2.58 16 4 C 0.04 1.83 4.27 29.85 0.13 1.95 16 5 C -0.50 -27.72 8.84 25.60 0.23 -27.49 16 6 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 7 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 8 N -0.94 -56.61 13.29 21.45 0.28 -56.32 16 9 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 13 N -0.53 -19.26 4.41 -870.49 -3.84 -23.10 16 14 C 0.06 2.07 4.82 86.31 0.42 2.49 16 15 C 0.07 1.82 4.87 86.31 0.42 2.24 16 16 N -0.53 -12.90 4.40 -870.46 -3.83 -16.72 16 17 C 0.04 0.74 2.26 44.92 0.10 0.84 16 18 H 0.10 1.68 8.06 -2.39 -0.02 1.66 16 19 C -0.16 -2.37 8.13 71.98 0.59 -1.78 16 20 C 0.46 9.46 2.78 71.98 0.20 9.66 16 21 F -0.18 -4.18 16.84 44.97 0.76 -3.42 16 22 F -0.18 -3.52 16.58 44.97 0.75 -2.77 16 23 F -0.19 -4.11 14.41 44.97 0.65 -3.46 16 24 C 0.04 1.11 5.29 86.31 0.46 1.57 16 25 C 0.06 1.70 5.25 86.31 0.45 2.15 16 26 H 0.06 1.87 6.59 -2.39 -0.02 1.85 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.05 1.71 6.46 -2.38 -0.02 1.70 16 29 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 30 H 0.00 0.08 6.12 -2.39 -0.01 0.07 16 31 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 32 H 0.04 1.28 6.47 -2.39 -0.02 1.27 16 33 H 0.06 2.62 6.07 -2.39 -0.01 2.61 16 34 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.11 2.34 6.00 -2.39 -0.01 2.33 16 36 H 0.09 1.09 7.67 -2.39 -0.02 1.07 16 37 H 0.07 1.21 7.96 -2.39 -0.02 1.20 16 38 H 0.09 1.30 6.27 -2.38 -0.01 1.29 16 39 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.10 2.37 5.34 -2.38 -0.01 2.36 16 41 H 0.08 2.25 8.12 -2.39 -0.02 2.23 16 42 H 0.04 1.17 6.60 -2.38 -0.02 1.16 16 Total: -1.00 -62.26 327.98 1.97 -60.29 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 1.02 Total: 8.04 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 4.16 Total: -9.25 kcal Atomic # 7 Polarization: -88.76 SS G_CDS: -7.39 Total: -96.15 kcal Atomic # 9 Polarization: -11.81 SS G_CDS: 2.15 Total: -9.66 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -62.26 1.97 -60.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411338332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.073 kcal (2) G-P(sol) polarization free energy of solvation -62.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds