Wall clock time and date at job start Tue Mar 31 2020 07:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46750 * 2 1 4 4 C 1.53002 * 109.46999 * 239.99820 * 2 1 3 5 5 C 1.50699 * 109.46798 * 174.99933 * 4 2 1 6 6 H 1.08006 * 120.00053 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00108 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00230 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99765 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47051 * 89.99618 * 9 7 5 11 11 H 1.48494 * 109.46972 * 209.99865 * 9 7 5 12 12 H 1.48498 * 109.46940 * 330.00024 * 9 7 5 13 13 N 1.46897 * 109.47225 * 119.99610 * 2 1 3 14 14 C 1.46962 * 111.00041 * 58.79834 * 13 2 1 15 15 C 1.53044 * 109.36800 * 176.80857 * 14 13 2 16 16 N 1.46956 * 109.36378 * 58.40510 * 15 14 13 17 17 C 1.46897 * 111.00355 * 176.81286 * 16 15 14 18 18 H 1.09002 * 109.47156 * 316.09853 * 17 16 15 19 19 C 1.53001 * 109.47250 * 76.09555 * 17 16 15 20 20 C 1.52998 * 109.47100 * 196.09955 * 17 16 15 21 21 F 1.39897 * 109.47537 * 54.25402 * 20 17 16 22 22 F 1.39906 * 109.47025 * 174.25422 * 20 17 16 23 23 F 1.39899 * 109.47257 * 294.25356 * 20 17 16 24 24 C 1.46957 * 110.88088 * 300.67994 * 16 15 14 25 25 C 1.46956 * 111.00355 * 295.00188 * 13 2 1 26 26 H 1.09002 * 109.46822 * 300.00107 * 1 2 3 27 27 H 1.08993 * 109.47081 * 60.00467 * 1 2 3 28 28 H 1.09002 * 109.46750 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46894 * 55.00100 * 4 2 1 30 30 H 1.08997 * 109.47256 * 294.99855 * 4 2 1 31 31 H 0.97001 * 120.00175 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.48913 * 296.78427 * 14 13 2 33 33 H 1.09003 * 109.48376 * 56.84494 * 14 13 2 34 34 H 1.08997 * 109.49483 * 298.43892 * 15 14 13 35 35 H 1.08997 * 109.50827 * 178.38197 * 15 14 13 36 36 H 1.08999 * 109.47053 * 299.99908 * 19 17 16 37 37 H 1.09002 * 109.46798 * 60.00079 * 19 17 16 38 38 H 1.09003 * 109.47079 * 179.97438 * 19 17 16 39 39 H 1.09000 * 109.48999 * 299.35266 * 24 16 15 40 40 H 1.08996 * 109.50887 * 179.29688 * 24 16 15 41 41 H 1.08994 * 109.48898 * 303.15597 * 25 13 2 42 42 H 1.09009 * 109.48550 * 63.19793 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3127 6 1 4.0790 -0.0854 -0.5395 7 6 4.2305 -1.1936 -2.3577 8 7 5.5412 -1.1003 -2.4134 9 14 3.3016 -2.1088 -3.6953 10 1 2.9409 -1.1639 -4.7826 11 1 4.1600 -3.1895 -4.2431 12 1 2.0655 -2.7003 -3.1233 13 7 2.0198 -0.6924 1.1994 14 6 1.5252 -2.0754 1.2480 15 6 2.1202 -2.7847 2.4666 16 7 1.7491 -2.0528 3.6857 17 6 2.2388 -2.7452 4.8852 18 1 2.0461 -3.8140 4.7919 19 6 3.7434 -2.5093 5.0318 20 6 1.5148 -2.2022 6.1188 21 9 0.1322 -2.2987 5.9283 22 9 1.8839 -2.9493 7.2426 23 9 1.8662 -0.8622 6.3137 24 6 2.2436 -0.6698 3.6373 25 6 1.6487 0.0395 2.4185 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -0.2618 -2.1370 30 1 1.7517 -1.7715 -1.2056 31 1 6.0256 -1.5071 -3.1488 32 1 0.4379 -2.0704 1.3250 33 1 1.8234 -2.6002 0.3403 34 1 3.2060 -2.8139 2.3764 35 1 1.7325 -3.8020 2.5210 36 1 4.2591 -2.8961 4.1529 37 1 3.9361 -1.4405 5.1251 38 1 4.1066 -3.0227 5.9221 39 1 3.3309 -0.6748 3.5603 40 1 1.9458 -0.1448 4.5449 41 1 2.0367 1.0566 2.3644 42 1 0.5627 0.0689 2.5087 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411338341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:52 Heat of formation + Delta-G solvation = -136.699243 kcal Electronic energy + Delta-G solvation = -25722.192587 eV Core-core repulsion = 21708.514773 eV Total energy + Delta-G solvation = -4013.677814 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.18281 -47.73967 -47.57301 -39.59055 -36.99233 -33.24265 -31.99845 -30.83147 -29.64201 -27.83957 -26.76336 -25.25433 -23.59565 -22.70400 -21.76345 -19.99339 -18.71508 -18.49175 -18.38148 -17.40549 -16.59189 -16.04339 -15.39035 -14.79396 -14.65902 -14.55180 -14.40660 -14.27841 -14.03359 -13.95902 -13.83578 -13.79745 -13.61389 -13.27086 -12.93379 -12.58222 -12.35869 -12.15370 -12.06521 -11.75146 -11.62574 -11.37725 -11.30369 -11.06230 -10.66760 -10.58688 -10.41323 -10.12507 -9.64954 -9.52349 -9.05135 -8.49879 -8.46110 -7.54703 -5.94590 -3.88997 2.61970 3.32465 3.40767 3.42347 3.46145 3.70325 3.95152 4.36728 4.44278 4.50728 4.72768 4.80272 5.04408 5.28353 5.31675 5.37901 5.39938 5.54228 5.58447 5.64506 5.68382 5.73278 5.85736 5.88344 5.92571 6.00918 6.16569 6.26794 6.32835 6.47454 6.53386 6.75369 6.76938 6.92105 7.09065 7.31954 7.75029 7.78541 7.92464 8.68447 9.18102 9.68435 11.19327 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.025600 B = 0.004153 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.469275 B = 6740.406084 C = 7125.974732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.097 3.903 3 H 0.076 0.924 4 C -0.008 4.008 5 C -0.491 4.491 6 H 0.078 0.922 7 C 0.062 3.938 8 N -0.907 5.907 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.268 1.268 13 N -0.510 5.510 14 C 0.057 3.943 15 C 0.060 3.940 16 N -0.528 5.528 17 C 0.039 3.961 18 H 0.121 0.879 19 C -0.192 4.192 20 C 0.460 3.540 21 F -0.174 7.174 22 F -0.187 7.187 23 F -0.181 7.181 24 C 0.035 3.965 25 C 0.056 3.944 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.014 0.986 30 H 0.017 0.983 31 H 0.260 0.740 32 H 0.035 0.965 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.555 -3.182 16.127 18.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.011 4.011 3 H 0.094 0.906 4 C -0.046 4.046 5 C -0.530 4.530 6 H 0.097 0.903 7 C -0.137 4.137 8 N -0.548 5.548 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.234 5.234 14 C -0.071 4.071 15 C -0.067 4.067 16 N -0.252 5.252 17 C -0.072 4.072 18 H 0.138 0.862 19 C -0.250 4.250 20 C 0.405 3.595 21 F -0.155 7.155 22 F -0.168 7.168 23 F -0.163 7.163 24 C -0.093 4.093 25 C -0.072 4.072 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.417 -3.217 16.027 18.386 hybrid contribution -0.535 -0.461 -0.588 0.919 sum -8.951 -3.678 15.439 18.221 Atomic orbital electron populations 1.22552 0.99596 1.01412 1.01042 1.21667 0.89966 0.98552 0.90942 0.90603 1.19720 0.97966 0.95299 0.91600 1.21050 0.89374 1.33852 1.08687 0.90346 1.25009 0.94649 0.96294 0.97772 1.69910 1.06444 1.46140 1.32285 0.86915 0.80169 0.80072 0.82851 1.20563 1.21634 1.19323 1.62261 1.58822 1.01237 1.01065 1.22158 0.96838 0.90635 0.97444 1.22260 0.99974 0.96582 0.87874 1.62313 1.58801 1.03116 1.00993 1.22780 0.94358 1.01105 0.88990 0.86157 1.22484 0.94000 1.04299 1.04220 1.20566 0.78148 0.75601 0.85170 1.93192 1.31438 1.95787 1.95130 1.93165 1.91478 1.76674 1.55492 1.93078 1.91841 1.35834 1.95506 1.22668 0.99246 0.87905 0.99451 1.22123 0.97997 0.97472 0.89655 0.93547 0.92574 0.92898 0.96819 0.96446 0.93058 0.94642 0.88833 0.92684 0.90569 0.89754 0.90439 0.91021 0.92587 0.89372 0.90545 0.94575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.98 8.49 37.16 0.32 -2.66 16 2 C 0.10 1.84 2.30 -67.71 -0.16 1.69 16 3 H 0.08 1.50 8.11 -51.93 -0.42 1.08 16 4 C -0.01 -0.19 3.34 -27.88 -0.09 -0.29 16 5 C -0.49 -13.51 9.39 -34.44 -0.32 -13.83 16 6 H 0.08 2.38 7.99 -52.48 -0.42 1.96 16 7 C 0.06 1.78 5.47 -17.82 -0.10 1.69 16 8 N -0.91 -27.76 13.96 55.43 0.77 -26.98 16 9 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 13 N -0.51 -9.14 4.41 -226.48 -1.00 -10.14 16 14 C 0.06 0.94 4.82 -3.77 -0.02 0.93 16 15 C 0.06 0.83 5.40 -3.77 -0.02 0.81 16 16 N -0.53 -6.76 4.44 -226.50 -1.01 -7.76 16 17 C 0.04 0.41 2.42 -67.72 -0.16 0.25 16 18 H 0.12 1.09 7.91 -51.93 -0.41 0.68 16 19 C -0.19 -1.89 8.05 37.16 0.30 -1.59 16 20 C 0.46 5.17 2.78 37.16 0.10 5.28 16 21 F -0.17 -2.20 17.13 2.25 0.04 -2.16 16 22 F -0.19 -2.03 17.02 2.25 0.04 -1.99 16 23 F -0.18 -2.15 13.71 2.25 0.03 -2.12 16 24 C 0.03 0.47 4.46 -3.77 -0.02 0.45 16 25 C 0.06 0.85 5.25 -3.77 -0.02 0.83 16 26 H 0.05 0.67 6.59 -51.93 -0.34 0.33 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.83 6.45 -51.93 -0.34 0.50 16 29 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 30 H 0.02 0.40 5.17 -51.93 -0.27 0.13 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.04 0.56 6.46 -51.93 -0.34 0.23 16 33 H 0.09 1.73 6.07 -51.93 -0.32 1.41 16 34 H 0.05 0.82 7.02 -51.93 -0.36 0.46 16 35 H 0.08 0.90 8.02 -51.93 -0.42 0.48 16 36 H 0.08 0.88 7.02 -51.93 -0.36 0.51 16 37 H 0.08 0.81 5.92 -51.93 -0.31 0.51 16 38 H 0.07 0.60 7.96 -51.93 -0.41 0.19 16 39 H 0.06 0.80 6.41 -51.93 -0.33 0.47 16 40 H 0.09 1.12 5.36 -51.93 -0.28 0.84 16 41 H 0.08 1.13 8.12 -51.93 -0.42 0.71 16 42 H 0.04 0.54 6.60 -51.92 -0.34 0.20 16 LS Contribution 322.27 15.07 4.86 4.86 Total: -1.00 -29.71 322.27 -7.20 -36.90 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -6.07 Total: -0.87 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -0.19 Total: -6.46 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: -1.23 Total: -44.89 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 0.11 Total: -6.27 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.71 -7.20 -36.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411338341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.795 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds