Wall clock time and date at job start Tue Mar 31 2020 07:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46750 * 2 1 4 4 C 1.53002 * 109.46999 * 239.99820 * 2 1 3 5 5 C 1.50699 * 109.46798 * 174.99933 * 4 2 1 6 6 H 1.08006 * 120.00053 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00108 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00230 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99765 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47051 * 89.99618 * 9 7 5 11 11 H 1.48494 * 109.46972 * 209.99865 * 9 7 5 12 12 H 1.48498 * 109.46940 * 330.00024 * 9 7 5 13 13 N 1.46897 * 109.47225 * 119.99610 * 2 1 3 14 14 C 1.46962 * 111.00041 * 58.79834 * 13 2 1 15 15 C 1.53044 * 109.36800 * 176.80857 * 14 13 2 16 16 N 1.46956 * 109.36378 * 58.40510 * 15 14 13 17 17 C 1.46897 * 111.00355 * 176.81286 * 16 15 14 18 18 H 1.09002 * 109.47156 * 316.09853 * 17 16 15 19 19 C 1.53001 * 109.47250 * 76.09555 * 17 16 15 20 20 C 1.52998 * 109.47100 * 196.09955 * 17 16 15 21 21 F 1.39897 * 109.47537 * 54.25402 * 20 17 16 22 22 F 1.39906 * 109.47025 * 174.25422 * 20 17 16 23 23 F 1.39899 * 109.47257 * 294.25356 * 20 17 16 24 24 C 1.46957 * 110.88088 * 300.67994 * 16 15 14 25 25 C 1.46956 * 111.00355 * 295.00188 * 13 2 1 26 26 H 1.09002 * 109.46822 * 300.00107 * 1 2 3 27 27 H 1.08993 * 109.47081 * 60.00467 * 1 2 3 28 28 H 1.09002 * 109.46750 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46894 * 55.00100 * 4 2 1 30 30 H 1.08997 * 109.47256 * 294.99855 * 4 2 1 31 31 H 0.97001 * 120.00175 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.48913 * 296.78427 * 14 13 2 33 33 H 1.09003 * 109.48376 * 56.84494 * 14 13 2 34 34 H 1.08997 * 109.49483 * 298.43892 * 15 14 13 35 35 H 1.08997 * 109.50827 * 178.38197 * 15 14 13 36 36 H 1.08999 * 109.47053 * 299.99908 * 19 17 16 37 37 H 1.09002 * 109.46798 * 60.00079 * 19 17 16 38 38 H 1.09003 * 109.47079 * 179.97438 * 19 17 16 39 39 H 1.09000 * 109.48999 * 299.35266 * 24 16 15 40 40 H 1.08996 * 109.50887 * 179.29688 * 24 16 15 41 41 H 1.08994 * 109.48898 * 303.15597 * 25 13 2 42 42 H 1.09009 * 109.48550 * 63.19793 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3127 6 1 4.0790 -0.0854 -0.5395 7 6 4.2305 -1.1936 -2.3577 8 7 5.5412 -1.1003 -2.4134 9 14 3.3016 -2.1088 -3.6953 10 1 2.9409 -1.1639 -4.7826 11 1 4.1600 -3.1895 -4.2431 12 1 2.0655 -2.7003 -3.1233 13 7 2.0198 -0.6924 1.1994 14 6 1.5252 -2.0754 1.2480 15 6 2.1202 -2.7847 2.4666 16 7 1.7491 -2.0528 3.6857 17 6 2.2388 -2.7452 4.8852 18 1 2.0461 -3.8140 4.7919 19 6 3.7434 -2.5093 5.0318 20 6 1.5148 -2.2022 6.1188 21 9 0.1322 -2.2987 5.9283 22 9 1.8839 -2.9493 7.2426 23 9 1.8662 -0.8622 6.3137 24 6 2.2436 -0.6698 3.6373 25 6 1.6487 0.0395 2.4185 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -0.2618 -2.1370 30 1 1.7517 -1.7715 -1.2056 31 1 6.0256 -1.5071 -3.1488 32 1 0.4379 -2.0704 1.3250 33 1 1.8234 -2.6002 0.3403 34 1 3.2060 -2.8139 2.3764 35 1 1.7325 -3.8020 2.5210 36 1 4.2591 -2.8961 4.1529 37 1 3.9361 -1.4405 5.1251 38 1 4.1066 -3.0227 5.9221 39 1 3.3309 -0.6748 3.5603 40 1 1.9458 -0.1448 4.5449 41 1 2.0367 1.0566 2.3644 42 1 0.5627 0.0689 2.5087 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411338341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:51 Heat of formation + Delta-G solvation = -156.687865 kcal Electronic energy + Delta-G solvation = -25723.059359 eV Core-core repulsion = 21708.514773 eV Total energy + Delta-G solvation = -4014.544586 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.08537 -48.63438 -48.49471 -40.77517 -38.23984 -35.00357 -33.59362 -32.04239 -30.96210 -29.50859 -27.66146 -26.42905 -24.98672 -24.29362 -22.84810 -21.35692 -19.90765 -19.43533 -19.39347 -18.75200 -18.34776 -17.19351 -16.59160 -16.30276 -15.89139 -15.69866 -15.47264 -15.34524 -15.31649 -15.01358 -14.90019 -14.71629 -14.67395 -14.62870 -14.18688 -14.09436 -13.91740 -13.43202 -13.30756 -12.93240 -12.85206 -12.72262 -12.53869 -12.35133 -12.23761 -11.99232 -11.73137 -11.62148 -11.43565 -11.30060 -10.97004 -10.65578 -9.54950 -8.88569 -8.15639 -6.14514 1.39011 1.40229 1.50860 1.72198 2.43416 2.48658 2.81890 3.08153 3.08844 3.24870 3.45510 3.80412 3.97836 3.98108 4.07672 4.25538 4.35604 4.37733 4.39713 4.46665 4.54992 4.59728 4.65521 4.69077 4.86295 4.92445 4.97336 5.00964 5.07828 5.13123 5.14157 5.26666 5.31134 5.57605 5.75765 5.77269 5.81215 6.37472 6.42828 6.55122 6.93820 7.46374 9.01707 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.025600 B = 0.004153 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.469275 B = 6740.406084 C = 7125.974732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.099 3.901 3 H 0.060 0.940 4 C -0.005 4.005 5 C -0.487 4.487 6 H 0.034 0.966 7 C 0.000 4.000 8 N -0.958 5.958 9 Si 0.941 3.059 10 H -0.272 1.272 11 H -0.291 1.291 12 H -0.247 1.247 13 N -0.536 5.536 14 C 0.059 3.941 15 C 0.067 3.933 16 N -0.528 5.528 17 C 0.041 3.959 18 H 0.142 0.858 19 C -0.187 4.187 20 C 0.463 3.537 21 F -0.181 7.181 22 F -0.182 7.182 23 F -0.186 7.186 24 C 0.041 3.959 25 C 0.059 3.941 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.017 0.983 30 H 0.023 0.977 31 H 0.260 0.740 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.038 0.962 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.044 0.956 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.677 -4.301 16.736 20.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.009 4.009 3 H 0.078 0.922 4 C -0.042 4.042 5 C -0.526 4.526 6 H 0.053 0.947 7 C -0.195 4.195 8 N -0.601 5.601 9 Si 0.766 3.234 10 H -0.198 1.198 11 H -0.217 1.217 12 H -0.170 1.170 13 N -0.260 5.260 14 C -0.069 4.069 15 C -0.061 4.061 16 N -0.253 5.253 17 C -0.070 4.070 18 H 0.160 0.840 19 C -0.245 4.245 20 C 0.408 3.592 21 F -0.163 7.163 22 F -0.164 7.164 23 F -0.167 7.167 24 C -0.087 4.087 25 C -0.069 4.069 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.036 0.964 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.120 0.880 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.062 0.938 40 H 0.117 0.883 41 H 0.092 0.908 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.564 -4.330 16.658 20.195 hybrid contribution 0.187 -0.056 -0.679 0.707 sum -10.377 -4.387 15.979 19.551 Atomic orbital electron populations 1.22395 0.96622 1.02067 1.02254 1.21467 0.92235 0.97168 0.90070 0.92206 1.19655 0.94626 0.96143 0.93798 1.21261 0.91880 1.32346 1.07085 0.94728 1.25902 0.95410 0.97587 1.00613 1.70081 1.08486 1.48012 1.33520 0.85797 0.79366 0.78675 0.79561 1.19796 1.21694 1.17033 1.62178 1.59928 1.02257 1.01625 1.22109 0.97459 0.89687 0.97642 1.22174 0.98875 0.97605 0.87400 1.62267 1.58857 1.02742 1.01414 1.22877 0.94495 1.01971 0.87629 0.83993 1.22436 0.93485 1.03915 1.04713 1.20591 0.77779 0.75412 0.85425 1.93180 1.32095 1.95808 1.95189 1.93174 1.91393 1.76521 1.55313 1.93068 1.91836 1.36293 1.95535 1.22585 0.98411 0.88607 0.99048 1.22132 0.98456 0.97292 0.89047 0.91944 0.91793 0.92421 0.96438 0.95899 0.93115 0.93613 0.91241 0.94350 0.87972 0.90449 0.91321 0.89283 0.93782 0.88255 0.90846 0.93815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.16 8.49 71.99 0.61 -4.54 16 2 C 0.10 3.72 2.30 44.92 0.10 3.82 16 3 H 0.06 2.40 8.11 -2.39 -0.02 2.38 16 4 C 0.00 -0.22 3.34 29.85 0.10 -0.12 16 5 C -0.49 -27.45 9.39 25.60 0.24 -27.21 16 6 H 0.03 2.20 7.99 -2.91 -0.02 2.17 16 7 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 8 N -0.96 -60.38 13.96 21.45 0.30 -60.08 16 9 Si 0.94 44.04 27.47 68.60 1.88 45.92 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 12 H -0.25 -10.59 6.54 99.48 0.65 -9.93 16 13 N -0.54 -19.05 4.41 -870.44 -3.84 -22.89 16 14 C 0.06 1.87 4.82 86.31 0.42 2.29 16 15 C 0.07 1.74 5.40 86.31 0.47 2.20 16 16 N -0.53 -12.54 4.44 -870.51 -3.87 -16.40 16 17 C 0.04 0.77 2.42 44.92 0.11 0.88 16 18 H 0.14 2.11 7.91 -2.39 -0.02 2.09 16 19 C -0.19 -3.40 8.05 71.98 0.58 -2.82 16 20 C 0.46 9.38 2.78 71.98 0.20 9.58 16 21 F -0.18 -4.16 17.13 44.97 0.77 -3.39 16 22 F -0.18 -3.54 17.02 44.97 0.77 -2.77 16 23 F -0.19 -4.08 13.71 44.97 0.62 -3.46 16 24 C 0.04 1.07 4.46 86.31 0.38 1.45 16 25 C 0.06 1.73 5.25 86.31 0.45 2.18 16 26 H 0.06 1.65 6.59 -2.39 -0.02 1.63 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.06 1.65 6.45 -2.39 -0.02 1.64 16 29 H 0.02 0.77 7.57 -2.39 -0.02 0.76 16 30 H 0.02 1.02 5.17 -2.39 -0.01 1.01 16 31 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 32 H 0.05 1.35 6.46 -2.39 -0.02 1.33 16 33 H 0.07 2.52 6.07 -2.39 -0.01 2.50 16 34 H 0.04 1.13 7.02 -2.39 -0.02 1.11 16 35 H 0.10 2.13 8.02 -2.39 -0.02 2.11 16 36 H 0.08 1.54 7.02 -2.39 -0.02 1.52 16 37 H 0.07 1.38 5.92 -2.39 -0.01 1.36 16 38 H 0.09 1.31 7.96 -2.39 -0.02 1.29 16 39 H 0.04 1.25 6.41 -2.39 -0.02 1.24 16 40 H 0.10 2.37 5.36 -2.39 -0.01 2.36 16 41 H 0.07 2.16 8.12 -2.39 -0.02 2.14 16 42 H 0.04 1.22 6.60 -2.38 -0.02 1.21 16 Total: -1.00 -64.83 322.27 1.73 -63.10 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.97 Total: 11.82 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 4.13 Total: -11.84 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -7.41 Total: -99.38 kcal Atomic # 9 Polarization: -11.78 SS G_CDS: 2.15 Total: -9.63 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.92 kcal Total: -64.83 1.73 -63.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411338341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.589 kcal (2) G-P(sol) polarization free energy of solvation -64.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds