Wall clock time and date at job start Tue Mar 31 2020 07:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.47081 * 2 1 4 4 C 1.46503 * 119.99689 * 264.52278 * 3 2 1 5 5 C 1.50693 * 109.47413 * 275.06829 * 4 3 2 6 6 O 1.34305 * 125.79215 * 84.12869 * 5 4 3 7 7 C 1.34296 * 109.48136 * 179.82489 * 6 5 4 8 8 C 1.34513 * 108.41908 * 0.43946 * 7 6 5 9 9 C 1.34511 * 125.79099 * 264.43839 * 5 4 3 10 10 C 1.50700 * 126.57872 * 0.03267 * 9 5 4 11 11 C 1.34770 * 120.00414 * 84.52647 * 3 2 1 12 12 O 1.21583 * 120.00468 * 179.72567 * 11 3 2 13 13 N 1.34783 * 119.99725 * 359.97438 * 11 3 2 14 14 C 1.46500 * 119.99963 * 179.97438 * 13 11 3 15 15 C 1.52992 * 109.47095 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47064 * 180.02562 * 15 14 13 17 17 C 1.50707 * 109.47344 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99738 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00127 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99967 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99904 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46995 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46881 * 119.99398 * 21 19 17 24 24 H 1.48498 * 109.47000 * 239.99737 * 21 19 17 25 25 H 1.09001 * 109.47239 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.47334 * 300.00071 * 1 2 3 27 27 H 1.08997 * 109.47231 * 60.00344 * 1 2 3 28 28 H 1.09001 * 109.47563 * 240.00011 * 2 1 3 29 29 H 1.08997 * 109.47231 * 119.99656 * 2 1 3 30 30 H 1.08999 * 109.47234 * 35.07249 * 4 3 2 31 31 H 1.09003 * 109.46827 * 155.06391 * 4 3 2 32 32 H 1.07997 * 125.79436 * 180.13793 * 7 6 5 33 33 H 1.07999 * 126.58151 * 179.71412 * 8 7 6 34 34 H 1.08998 * 109.47067 * 87.01193 * 10 9 5 35 35 H 1.08998 * 109.47388 * 207.00953 * 10 9 5 36 36 H 1.08996 * 109.47275 * 327.01371 * 10 9 5 37 37 H 0.96996 * 119.99728 * 0.02562 * 13 11 3 38 38 H 1.09006 * 109.47380 * 300.00189 * 14 13 11 39 39 H 1.09001 * 109.47241 * 60.00051 * 14 13 11 40 40 H 1.09002 * 109.47139 * 299.99721 * 15 14 13 41 41 H 1.08997 * 109.47418 * 60.00270 * 15 14 13 42 42 H 1.09006 * 109.47173 * 299.99799 * 16 15 14 43 43 H 1.09001 * 109.47479 * 59.99680 * 16 15 14 44 44 H 0.96998 * 119.99848 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3766 2.0314 -1.2630 5 6 3.7970 1.6804 -1.6235 6 8 4.1927 0.5689 -2.2653 7 6 5.5266 0.5919 -2.4199 8 6 5.9993 1.7225 -1.8653 9 6 4.8843 2.4242 -1.3519 10 6 4.9094 3.7506 -0.6370 11 6 2.1379 2.0538 1.1618 12 8 2.5479 3.1984 1.1623 13 7 1.8079 1.4557 2.3237 14 6 1.9385 2.1865 3.5866 15 6 1.5024 1.2862 4.7442 16 6 1.6382 2.0497 6.0632 17 6 1.2092 1.1627 7.2036 18 1 0.8730 0.1553 7.0071 19 6 1.2451 1.6375 8.4975 20 7 1.6541 2.8644 8.7366 21 14 0.7127 0.5383 9.9109 22 1 0.2987 -0.7853 9.3797 23 1 1.8460 0.3611 10.8541 24 1 -0.4301 1.1653 10.6222 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7063 1.6885 -2.0512 31 1 2.2859 3.1122 -1.1538 32 1 6.1197 -0.1706 -2.9028 33 1 7.0323 2.0344 -1.8205 34 1 4.9704 3.5826 0.4383 35 1 5.7765 4.3238 -0.9649 36 1 3.9994 4.3046 -0.8671 37 1 1.4845 0.5412 2.3236 38 1 2.9777 2.4831 3.7291 39 1 1.3076 3.0750 3.5593 40 1 0.4633 0.9893 4.6021 41 1 2.1336 0.3980 4.7715 42 1 2.6772 2.3470 6.2056 43 1 1.0067 2.9377 6.0357 44 1 1.6797 3.1983 9.6469 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413229319.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:03 Heat of formation + Delta-G solvation = -30.081433 kcal Electronic energy + Delta-G solvation = -23649.736833 eV Core-core repulsion = 20182.539054 eV Total energy + Delta-G solvation = -3467.197779 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.69189 -40.10382 -36.30129 -35.38212 -34.24985 -33.30917 -31.92248 -31.00042 -30.00109 -28.06885 -26.66144 -25.29945 -23.69309 -22.74478 -21.58140 -20.62149 -20.11446 -19.32087 -17.95972 -17.06519 -16.86355 -16.31946 -15.79770 -15.61253 -14.68043 -14.57307 -14.35859 -14.29943 -13.98684 -13.80740 -13.49198 -13.02825 -12.92314 -12.78195 -12.45922 -12.32780 -12.27392 -11.86269 -11.77672 -11.68398 -11.46122 -11.38395 -10.91610 -10.70095 -10.55878 -10.03770 -9.85283 -9.67915 -9.44183 -9.10591 -9.02775 -8.60286 -8.43834 -8.36860 -6.01327 -4.04243 1.51101 2.40279 2.83514 2.90669 3.30163 3.37657 3.38575 3.41152 4.04238 4.44923 4.54211 4.69153 4.76278 4.85734 4.93504 5.08223 5.18210 5.34564 5.35098 5.45073 5.51317 5.56917 5.68212 5.73632 5.80138 5.82911 5.90584 5.97196 6.11275 6.16425 6.20053 6.31884 6.50387 6.57592 6.63716 6.79598 6.98496 7.03649 7.08998 7.64886 7.77639 7.97807 8.06671 8.38832 8.73735 9.02674 9.59925 11.10015 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022530 B = 0.002850 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.468438 B = 9821.138991 C =10325.426120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.105 3.895 3 N -0.629 5.629 4 C 0.217 3.783 5 C -0.044 4.044 6 O -0.176 6.176 7 C -0.041 4.041 8 C -0.214 4.214 9 C -0.149 4.149 10 C -0.079 4.079 11 C 0.704 3.296 12 O -0.584 6.584 13 N -0.740 5.740 14 C 0.135 3.865 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.521 4.521 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.200 0.800 33 H 0.146 0.854 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.393 0.607 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.083 -5.459 -24.838 25.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.018 4.018 3 N -0.367 5.367 4 C 0.093 3.907 5 C -0.095 4.095 6 O -0.073 6.073 7 C -0.109 4.109 8 C -0.234 4.234 9 C -0.151 4.151 10 C -0.136 4.136 11 C 0.405 3.595 12 O -0.462 6.462 13 N -0.395 5.395 14 C 0.011 3.989 15 C -0.158 4.158 16 C -0.013 4.013 17 C -0.559 4.559 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.135 0.865 32 H 0.217 0.783 33 H 0.163 0.837 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.228 0.772 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.194 -4.694 -24.737 25.381 hybrid contribution -0.044 -1.099 0.874 1.405 sum 3.150 -5.793 -23.863 24.757 Atomic orbital electron populations 1.22251 0.95562 1.02484 1.02958 1.21508 0.94489 0.82546 1.03278 1.47246 1.69717 1.14405 1.05306 1.19583 0.86496 0.99747 0.84831 1.22798 0.97671 0.87079 1.01988 1.83980 1.23548 1.38982 1.60744 1.23945 0.81097 1.00804 1.05054 1.21778 1.00059 0.96672 1.04862 1.20415 0.91921 0.99728 1.03062 1.20185 1.01877 0.91395 1.00102 1.15949 0.78609 0.84593 0.80311 1.90895 1.52699 1.16744 1.85826 1.45538 1.70629 1.17535 1.05774 1.21510 1.01483 0.95305 0.80560 1.21885 1.00055 0.98516 0.95370 1.19028 0.97601 0.95465 0.89248 1.21243 1.43848 0.99372 0.91484 0.92627 1.25031 0.95393 0.95078 0.98994 1.69977 1.47321 1.15583 1.20378 0.86534 0.78287 0.80748 0.82407 1.19768 1.21010 1.21007 0.91313 0.91910 0.92170 0.89967 0.90828 0.89398 0.86463 0.78316 0.83659 0.90624 0.92436 0.91296 0.77169 0.92006 0.91895 0.92817 0.92871 0.96262 0.96237 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.12 37.15 0.38 -0.98 16 2 C 0.11 0.94 5.81 -4.04 -0.02 0.91 16 3 N -0.63 -7.39 2.47 -180.81 -0.45 -7.84 16 4 C 0.22 2.32 5.81 -5.20 -0.03 2.29 16 5 C -0.04 -0.53 6.90 -35.63 -0.25 -0.77 16 6 O -0.18 -1.98 10.65 5.72 0.06 -1.92 16 7 C -0.04 -0.39 12.09 29.42 0.36 -0.03 16 8 C -0.21 -2.32 10.87 -39.70 -0.43 -2.75 16 9 C -0.15 -1.87 6.16 -104.74 -0.65 -2.52 16 10 C -0.08 -0.99 9.28 36.01 0.33 -0.65 16 11 C 0.70 10.78 8.24 -86.92 -0.72 10.07 16 12 O -0.58 -10.68 14.46 5.29 0.08 -10.61 16 13 N -0.74 -11.04 5.42 -65.23 -0.35 -11.39 16 14 C 0.13 2.41 5.67 -4.05 -0.02 2.38 16 15 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 16 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 17 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 21 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.59 7.94 -51.92 -0.41 0.17 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.65 8.03 -51.93 -0.42 0.23 16 29 H 0.07 0.65 6.66 -51.93 -0.35 0.31 16 30 H 0.09 0.70 8.11 -51.93 -0.42 0.28 16 31 H 0.12 1.34 6.19 -51.93 -0.32 1.02 16 32 H 0.20 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.08 1.12 7.64 -51.93 -0.40 0.72 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.86 7.17 -51.93 -0.37 0.49 16 37 H 0.39 4.95 6.06 -40.82 -0.25 4.71 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 366.16 15.07 5.52 5.52 Total: -1.00 -33.08 366.16 -8.30 -41.38 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.13 Total: 1.96 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -1.74 Total: -7.46 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -0.06 Total: -45.35 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.14 Total: -12.53 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.08 -8.30 -41.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413229319.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.297 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds