Wall clock time and date at job start Tue Mar 31 2020 07:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.47081 * 2 1 4 4 C 1.46503 * 119.99689 * 264.52278 * 3 2 1 5 5 C 1.50693 * 109.47413 * 275.06829 * 4 3 2 6 6 O 1.34305 * 125.79215 * 84.12869 * 5 4 3 7 7 C 1.34296 * 109.48136 * 179.82489 * 6 5 4 8 8 C 1.34513 * 108.41908 * 0.43946 * 7 6 5 9 9 C 1.34511 * 125.79099 * 264.43839 * 5 4 3 10 10 C 1.50700 * 126.57872 * 0.03267 * 9 5 4 11 11 C 1.34770 * 120.00414 * 84.52647 * 3 2 1 12 12 O 1.21583 * 120.00468 * 179.72567 * 11 3 2 13 13 N 1.34783 * 119.99725 * 359.97438 * 11 3 2 14 14 C 1.46500 * 119.99963 * 179.97438 * 13 11 3 15 15 C 1.52992 * 109.47095 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47064 * 180.02562 * 15 14 13 17 17 C 1.50707 * 109.47344 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99738 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00127 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99967 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99904 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46995 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46881 * 119.99398 * 21 19 17 24 24 H 1.48498 * 109.47000 * 239.99737 * 21 19 17 25 25 H 1.09001 * 109.47239 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.47334 * 300.00071 * 1 2 3 27 27 H 1.08997 * 109.47231 * 60.00344 * 1 2 3 28 28 H 1.09001 * 109.47563 * 240.00011 * 2 1 3 29 29 H 1.08997 * 109.47231 * 119.99656 * 2 1 3 30 30 H 1.08999 * 109.47234 * 35.07249 * 4 3 2 31 31 H 1.09003 * 109.46827 * 155.06391 * 4 3 2 32 32 H 1.07997 * 125.79436 * 180.13793 * 7 6 5 33 33 H 1.07999 * 126.58151 * 179.71412 * 8 7 6 34 34 H 1.08998 * 109.47067 * 87.01193 * 10 9 5 35 35 H 1.08998 * 109.47388 * 207.00953 * 10 9 5 36 36 H 1.08996 * 109.47275 * 327.01371 * 10 9 5 37 37 H 0.96996 * 119.99728 * 0.02562 * 13 11 3 38 38 H 1.09006 * 109.47380 * 300.00189 * 14 13 11 39 39 H 1.09001 * 109.47241 * 60.00051 * 14 13 11 40 40 H 1.09002 * 109.47139 * 299.99721 * 15 14 13 41 41 H 1.08997 * 109.47418 * 60.00270 * 15 14 13 42 42 H 1.09006 * 109.47173 * 299.99799 * 16 15 14 43 43 H 1.09001 * 109.47479 * 59.99680 * 16 15 14 44 44 H 0.96998 * 119.99848 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3766 2.0314 -1.2630 5 6 3.7970 1.6804 -1.6235 6 8 4.1927 0.5689 -2.2653 7 6 5.5266 0.5919 -2.4199 8 6 5.9993 1.7225 -1.8653 9 6 4.8843 2.4242 -1.3519 10 6 4.9094 3.7506 -0.6370 11 6 2.1379 2.0538 1.1618 12 8 2.5479 3.1984 1.1623 13 7 1.8079 1.4557 2.3237 14 6 1.9385 2.1865 3.5866 15 6 1.5024 1.2862 4.7442 16 6 1.6382 2.0497 6.0632 17 6 1.2092 1.1627 7.2036 18 1 0.8730 0.1553 7.0071 19 6 1.2451 1.6375 8.4975 20 7 1.6541 2.8644 8.7366 21 14 0.7127 0.5383 9.9109 22 1 0.2987 -0.7853 9.3797 23 1 1.8460 0.3611 10.8541 24 1 -0.4301 1.1653 10.6222 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7063 1.6885 -2.0512 31 1 2.2859 3.1122 -1.1538 32 1 6.1197 -0.1706 -2.9028 33 1 7.0323 2.0344 -1.8205 34 1 4.9704 3.5826 0.4383 35 1 5.7765 4.3238 -0.9649 36 1 3.9994 4.3046 -0.8671 37 1 1.4845 0.5412 2.3236 38 1 2.9777 2.4831 3.7291 39 1 1.3076 3.0750 3.5593 40 1 0.4633 0.9893 4.6021 41 1 2.1336 0.3980 4.7715 42 1 2.6772 2.3470 6.2056 43 1 1.0067 2.9377 6.0357 44 1 1.6797 3.1983 9.6469 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413229319.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:03 Heat of formation + Delta-G solvation = -49.781344 kcal Electronic energy + Delta-G solvation = -23650.591085 eV Core-core repulsion = 20182.539054 eV Total energy + Delta-G solvation = -3468.052031 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.51951 -41.24820 -37.45143 -36.78853 -35.36113 -34.96775 -33.19244 -32.33481 -30.87143 -29.22102 -28.23937 -26.36496 -24.93498 -24.08843 -22.41664 -22.27877 -21.18059 -20.36660 -19.05715 -18.47505 -17.90408 -17.74602 -16.90026 -16.74961 -16.46585 -15.90470 -15.53249 -15.35297 -15.01637 -14.78384 -14.59869 -14.24859 -14.03730 -13.81832 -13.71500 -13.57824 -13.41738 -13.29361 -13.04599 -12.77509 -12.66781 -12.54719 -12.34398 -12.32672 -12.06943 -11.67625 -11.57764 -11.24343 -11.09502 -10.55671 -10.54425 -10.20849 -9.70899 -9.32013 -8.19045 -6.30435 0.66066 1.42046 1.42178 1.52757 1.55596 1.85972 1.98203 2.27326 2.42260 2.98067 3.14802 3.76198 3.97153 3.99309 4.03740 4.13317 4.21478 4.23140 4.34346 4.50915 4.54390 4.56299 4.64468 4.80104 4.84028 4.86999 4.93245 4.95688 4.96225 5.02126 5.16145 5.22626 5.29194 5.35577 5.47333 5.47968 5.55598 5.62154 5.71377 5.84549 5.87602 6.22533 6.23367 6.86558 6.94890 7.39110 7.55131 8.93340 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022530 B = 0.002850 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.468438 B = 9821.138991 C =10325.426120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.101 3.899 3 N -0.621 5.621 4 C 0.215 3.785 5 C -0.053 4.053 6 O -0.179 6.179 7 C -0.028 4.028 8 C -0.236 4.236 9 C -0.176 4.176 10 C -0.070 4.070 11 C 0.698 3.302 12 O -0.620 6.620 13 N -0.731 5.731 14 C 0.151 3.849 15 C -0.100 4.100 16 C 0.025 3.975 17 C -0.539 4.539 18 H 0.066 0.934 19 C -0.004 4.004 20 N -0.935 5.935 21 Si 0.967 3.033 22 H -0.258 1.258 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.088 0.912 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.104 0.896 32 H 0.241 0.759 33 H 0.159 0.841 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.407 0.593 38 H 0.044 0.956 39 H 0.049 0.951 40 H 0.067 0.933 41 H 0.064 0.936 42 H -0.009 1.009 43 H -0.007 1.007 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.590 -8.316 -26.220 27.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.021 4.021 3 N -0.358 5.358 4 C 0.092 3.908 5 C -0.104 4.104 6 O -0.075 6.075 7 C -0.095 4.095 8 C -0.255 4.255 9 C -0.179 4.179 10 C -0.127 4.127 11 C 0.400 3.600 12 O -0.500 6.500 13 N -0.388 5.388 14 C 0.027 3.973 15 C -0.138 4.138 16 C -0.013 4.013 17 C -0.577 4.577 18 H 0.084 0.916 19 C -0.201 4.201 20 N -0.575 5.575 21 Si 0.792 3.208 22 H -0.182 1.182 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.107 0.893 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.138 0.862 31 H 0.122 0.878 32 H 0.257 0.743 33 H 0.177 0.823 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.245 0.755 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.010 0.990 43 H 0.011 0.989 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.684 -7.603 -26.165 27.379 hybrid contribution 0.163 -0.201 1.221 1.248 sum 2.848 -7.804 -24.944 26.291 Atomic orbital electron populations 1.22201 0.94436 1.03623 1.02360 1.21744 0.95327 0.80760 1.04255 1.47283 1.68774 1.15338 1.04368 1.19709 0.86894 0.99206 0.84985 1.22871 0.97874 0.87345 1.02289 1.83984 1.24498 1.38493 1.60566 1.24735 0.80472 1.00896 1.03403 1.22049 1.00444 0.97338 1.05645 1.20639 0.93335 0.99965 1.03921 1.20042 1.02231 0.92187 0.98253 1.16125 0.78383 0.84361 0.81142 1.90877 1.54165 1.18509 1.86477 1.45217 1.70876 1.17950 1.04755 1.21057 0.99983 0.94754 0.81553 1.21581 1.01225 0.98115 0.92884 1.18932 0.95140 0.95050 0.92162 1.21703 1.43585 1.00049 0.92391 0.91560 1.26026 0.95360 0.96540 1.02214 1.70121 1.48585 1.17657 1.21185 0.85364 0.77826 0.79134 0.78503 1.18159 1.20618 1.20555 0.89275 0.93614 0.91658 0.88177 0.90661 0.86181 0.87820 0.74271 0.82304 0.93584 0.91038 0.91901 0.75540 0.93765 0.93264 0.91387 0.91701 0.99036 0.98852 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.12 71.98 0.73 -1.46 16 2 C 0.10 1.55 5.81 86.38 0.50 2.06 16 3 N -0.62 -13.91 2.47 -844.22 -2.08 -16.00 16 4 C 0.22 4.38 5.81 85.63 0.50 4.88 16 5 C -0.05 -1.20 6.90 24.83 0.17 -1.03 16 6 O -0.18 -3.60 10.65 -2.43 -0.03 -3.62 16 7 C -0.03 -0.45 12.09 66.97 0.81 0.36 16 8 C -0.24 -4.78 10.87 22.19 0.24 -4.54 16 9 C -0.18 -4.39 6.16 -19.94 -0.12 -4.52 16 10 C -0.07 -1.85 9.28 71.24 0.66 -1.18 16 11 C 0.70 21.46 8.24 179.05 1.48 22.94 16 12 O -0.62 -23.56 14.46 -3.98 -0.06 -23.62 16 13 N -0.73 -21.59 5.42 -478.54 -2.59 -24.18 16 14 C 0.15 5.53 5.67 86.38 0.49 6.02 16 15 C -0.10 -3.93 5.27 30.59 0.16 -3.77 16 16 C 0.02 1.31 4.97 29.85 0.15 1.45 16 17 C -0.54 -30.23 9.11 25.60 0.23 -30.00 16 18 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 19 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 20 N -0.94 -57.39 13.29 21.45 0.28 -57.11 16 21 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 22 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 25 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 26 H 0.04 0.77 7.94 -2.38 -0.02 0.75 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.10 1.24 8.03 -2.39 -0.02 1.22 16 29 H 0.08 1.15 6.66 -2.39 -0.02 1.13 16 30 H 0.12 1.64 8.11 -2.39 -0.02 1.62 16 31 H 0.10 2.41 6.19 -2.39 -0.01 2.39 16 32 H 0.24 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 34 H 0.05 1.46 7.64 -2.39 -0.02 1.44 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.06 1.67 7.17 -2.39 -0.02 1.65 16 37 H 0.41 9.66 6.06 -92.71 -0.56 9.10 16 38 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.07 2.48 8.14 -2.39 -0.02 2.47 16 41 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 42 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 43 H -0.01 -0.40 8.14 -2.39 -0.02 -0.41 16 44 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -73.27 366.16 4.43 -68.84 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.42 Total: 18.29 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 6.46 Total: -8.55 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -4.39 Total: -97.29 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.08 Total: -27.24 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -73.27 4.43 -68.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413229319.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.060 kcal (2) G-P(sol) polarization free energy of solvation -73.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds