Wall clock time and date at job start Tue Mar 31 2020 07:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.65444 * 2 1 4 4 C 1.51579 * 110.59843 * 237.08662 * 2 1 3 5 5 O 1.21238 * 127.15880 * 61.50425 * 4 2 1 6 6 N 1.34768 * 105.68553 * 241.47274 * 4 2 1 7 7 C 1.46495 * 124.18107 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.46975 * 269.94732 * 7 6 4 9 9 C 1.53001 * 109.47426 * 299.99883 * 8 7 6 10 10 C 1.52997 * 109.47175 * 59.99838 * 8 7 6 11 11 C 1.50704 * 109.47333 * 179.97438 * 8 7 6 12 12 H 1.08003 * 119.99866 * 1.20126 * 11 8 7 13 13 C 1.37875 * 120.00478 * 181.19138 * 11 8 7 14 14 N 1.31514 * 120.00254 * 194.18495 * 13 11 8 15 15 Si 1.86800 * 119.99733 * 14.19492 * 13 11 8 16 16 H 1.48508 * 109.47442 * 84.53194 * 15 13 11 17 17 H 1.48500 * 109.47152 * 204.53619 * 15 13 11 18 18 H 1.48510 * 109.47154 * 324.53400 * 15 13 11 19 19 C 1.33799 * 111.64100 * 359.97438 * 6 4 2 20 20 O 1.21540 * 123.76349 * 180.26462 * 19 6 4 21 21 N 1.34519 * 112.45821 * 359.97438 * 19 6 4 22 22 C 1.46503 * 126.69038 * 179.97438 * 21 19 6 23 23 C 1.53786 * 113.60930 * 37.52775 * 22 21 19 24 24 C 1.53785 * 87.07990 * 220.01390 * 23 22 21 25 25 C 1.53782 * 113.61529 * 300.03187 * 22 21 19 26 26 H 1.09002 * 109.47350 * 297.08742 * 1 2 3 27 27 H 1.09000 * 109.47632 * 57.08789 * 1 2 3 28 28 H 1.09006 * 109.47383 * 177.08974 * 1 2 3 29 29 H 1.08998 * 109.47086 * 29.94582 * 7 6 4 30 30 H 1.08993 * 109.47383 * 149.94760 * 7 6 4 31 31 H 1.08995 * 109.46912 * 69.48651 * 9 8 7 32 32 H 1.08996 * 109.47305 * 189.48943 * 9 8 7 33 33 H 1.09003 * 109.46463 * 309.48728 * 9 8 7 34 34 H 1.09008 * 109.47219 * 60.00208 * 10 8 7 35 35 H 1.09000 * 109.47127 * 179.97438 * 10 8 7 36 36 H 1.08996 * 109.47362 * 299.99885 * 10 8 7 37 37 H 0.96996 * 119.99807 * 180.02562 * 14 13 11 38 38 H 1.09000 * 112.84891 * 168.83069 * 22 21 19 39 39 H 1.08999 * 113.61950 * 334.56345 * 23 22 21 40 40 H 1.09003 * 113.61450 * 105.47015 * 23 22 21 41 41 H 1.08999 * 113.62059 * 270.88858 * 24 23 22 42 42 H 1.08997 * 113.61179 * 139.97701 * 24 23 22 43 43 H 1.08998 * 113.61192 * 254.52627 * 25 22 21 44 44 H 1.08995 * 113.61628 * 25.43212 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 6 2.0633 -0.7710 -1.1911 5 8 1.8894 -0.5187 -2.3642 6 7 2.7715 -1.7948 -0.6750 7 6 3.4685 -2.8015 -1.4793 8 6 2.5253 -3.9733 -1.7588 9 6 2.0806 -4.5972 -0.4344 10 6 1.2989 -3.4700 -2.5226 11 6 3.2420 -5.0087 -2.5868 12 1 4.2737 -4.8560 -2.8675 13 6 2.5809 -6.1509 -2.9857 14 7 3.2603 -7.1727 -3.4588 15 14 0.7200 -6.2470 -2.8543 16 1 0.1062 -5.6307 -4.0580 17 1 0.3032 -7.6692 -2.7592 18 1 0.2710 -5.5174 -1.6412 19 6 2.7603 -1.7777 0.6628 20 8 3.3331 -2.5973 1.3537 21 7 2.0495 -0.7484 1.1576 22 6 1.8325 -0.4341 2.5720 23 6 3.0607 -0.7021 3.4579 24 6 2.0830 -1.2464 4.5127 25 6 1.1244 -1.5554 3.3505 26 1 -0.3634 0.4679 0.9149 27 1 -0.3634 0.5584 -0.8627 28 1 -0.3634 -1.0264 -0.0522 29 1 3.7852 -2.3571 -2.4229 30 1 4.3421 -3.1601 -0.9352 31 1 1.4207 -3.9058 0.0894 32 1 1.5490 -5.5281 -0.6317 33 1 2.9556 -4.8022 0.1824 34 1 1.6156 -3.0255 -3.4662 35 1 0.6272 -4.3049 -2.7221 36 1 0.7803 -2.7210 -1.9241 37 1 2.7951 -7.9761 -3.7398 38 1 1.3894 0.5501 2.7237 39 1 3.7335 -1.4588 3.0544 40 1 3.5799 0.2041 3.7702 41 1 1.7090 -0.4841 5.1962 42 1 2.4465 -2.1360 5.0271 43 1 0.0804 -1.3382 3.5762 44 1 1.2678 -2.5454 2.9177 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420079291.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:00 Heat of formation + Delta-G solvation = 0.560783 kcal Electronic energy + Delta-G solvation = -25991.715611 eV Core-core repulsion = 22525.846578 eV Total energy + Delta-G solvation = -3465.869033 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.31025 -39.15491 -37.85497 -36.55373 -35.88374 -33.69655 -31.58473 -30.55116 -27.41730 -26.28898 -25.74574 -25.15685 -24.65949 -24.33217 -21.57769 -21.12802 -19.38494 -18.73694 -17.12532 -17.01331 -16.26634 -15.99151 -15.91446 -15.19305 -15.05402 -14.84106 -14.29555 -14.01002 -13.42066 -13.41266 -13.13948 -12.79840 -12.74042 -12.64817 -12.52090 -12.29448 -12.17871 -11.99036 -11.83870 -11.29899 -10.99102 -10.95212 -10.91328 -10.69304 -10.40606 -10.08316 -10.05794 -9.86174 -9.65370 -9.36788 -9.05816 -8.85747 -8.49763 -8.38549 -6.11263 -4.07829 1.89452 2.33109 3.14014 3.30230 3.33576 3.38755 3.42838 4.10906 4.40117 4.41256 4.45403 4.62021 4.71213 4.75873 4.87206 5.07676 5.20914 5.35263 5.45266 5.51645 5.59599 5.70022 5.79906 5.84588 5.86821 5.90680 5.93651 5.98994 6.03901 6.16083 6.39718 6.45456 6.51177 6.63412 6.69082 6.73374 6.78175 7.06663 7.24758 7.46546 7.57361 7.66496 7.78839 8.40543 8.47345 8.91597 9.53693 11.01673 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019795 B = 0.005726 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.180635 B = 4888.945950 C = 5369.002087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.087 3.913 3 H 0.119 0.881 4 C 0.522 3.478 5 O -0.468 6.468 6 N -0.567 5.567 7 C 0.138 3.862 8 C 0.027 3.973 9 C -0.132 4.132 10 C -0.140 4.140 11 C -0.511 4.511 12 H 0.077 0.923 13 C 0.078 3.922 14 N -0.891 5.891 15 Si 0.883 3.117 16 H -0.286 1.286 17 H -0.305 1.305 18 H -0.251 1.251 19 C 0.702 3.298 20 O -0.531 6.531 21 N -0.620 5.620 22 C 0.158 3.842 23 C -0.156 4.156 24 C -0.137 4.137 25 C -0.151 4.151 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.013 0.987 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.021 0.979 37 H 0.264 0.736 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.555 17.119 13.378 22.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 H 0.136 0.864 4 C 0.308 3.692 5 O -0.338 6.338 6 N -0.311 5.311 7 C 0.019 3.981 8 C 0.025 3.975 9 C -0.189 4.189 10 C -0.197 4.197 11 C -0.549 4.549 12 H 0.095 0.905 13 C -0.124 4.124 14 N -0.528 5.528 15 Si 0.716 3.284 16 H -0.213 1.213 17 H -0.234 1.234 18 H -0.177 1.177 19 C 0.405 3.595 20 O -0.404 6.404 21 N -0.359 5.359 22 C 0.056 3.944 23 C -0.194 4.194 24 C -0.175 4.175 25 C -0.190 4.190 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.040 0.960 37 H 0.074 0.926 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.280 16.584 13.096 21.781 hybrid contribution -1.134 -0.144 -0.143 1.152 sum -6.415 16.439 12.953 21.890 Atomic orbital electron populations 1.21904 0.91201 1.03894 1.03523 1.22112 0.97475 0.97915 0.84593 0.86356 1.20709 0.77790 0.80956 0.89763 1.90788 1.56756 1.69662 1.16546 1.46676 1.48708 1.28144 1.07601 1.22004 0.95464 0.86935 0.93685 1.18833 0.92348 0.92547 0.93781 1.22210 0.99810 0.99400 0.97470 1.22316 0.98570 0.98460 1.00338 1.20647 0.99473 1.01712 1.33059 0.90536 1.24911 0.98091 0.94879 0.94530 1.69946 1.35710 1.04002 1.43111 0.87318 0.87090 0.74876 0.79085 1.21330 1.23384 1.17673 1.15872 0.79935 0.81762 0.81902 1.90911 1.48067 1.40857 1.60613 1.47804 1.53907 1.28663 1.05543 1.22497 0.98199 0.98792 0.74915 1.23542 0.97394 1.02548 0.95895 1.22625 0.97366 1.01465 0.96049 1.23443 0.98670 1.00395 0.96501 0.90831 0.90050 0.91459 0.89475 0.89134 0.96755 0.93086 0.92700 0.92559 0.94305 0.95963 0.92590 0.86785 0.87055 0.91423 0.90256 0.90716 0.91258 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.47 37.16 0.35 -1.04 16 2 C 0.09 0.98 4.04 -68.21 -0.28 0.71 16 3 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.52 8.32 5.99 -10.56 -0.06 8.26 16 5 O -0.47 -8.55 16.88 5.59 0.09 -8.45 16 6 N -0.57 -10.04 2.15 -120.74 -0.26 -10.30 16 7 C 0.14 2.83 4.66 -4.05 -0.02 2.81 16 8 C 0.03 0.62 0.57 -155.66 -0.09 0.53 16 9 C -0.13 -3.05 6.51 37.16 0.24 -2.81 16 10 C -0.14 -3.20 6.71 37.16 0.25 -2.95 16 11 C -0.51 -14.13 8.62 -34.44 -0.30 -14.43 16 12 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 13 C 0.08 2.26 5.32 -17.82 -0.09 2.16 16 14 N -0.89 -27.19 13.96 55.43 0.77 -26.41 16 15 Si 0.88 22.36 22.79 -169.99 -3.87 18.48 16 16 H -0.29 -7.19 7.10 56.52 0.40 -6.79 16 17 H -0.31 -7.79 7.11 56.52 0.40 -7.39 16 18 H -0.25 -5.99 4.65 56.52 0.26 -5.73 16 19 C 0.70 11.73 6.41 -88.02 -0.56 11.16 16 20 O -0.53 -10.16 13.00 5.33 0.07 -10.09 16 21 N -0.62 -7.77 2.93 -163.91 -0.48 -8.25 16 22 C 0.16 1.54 4.55 -67.11 -0.31 1.23 16 23 C -0.16 -1.59 7.51 -25.91 -0.19 -1.78 16 24 C -0.14 -1.21 8.08 -25.91 -0.21 -1.42 16 25 C -0.15 -1.55 7.66 -25.91 -0.20 -1.74 16 26 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.76 8.00 -51.93 -0.42 1.34 16 30 H 0.09 1.88 7.86 -51.93 -0.41 1.47 16 31 H 0.01 0.30 6.97 -51.93 -0.36 -0.07 16 32 H 0.05 1.24 4.30 -51.93 -0.22 1.02 16 33 H 0.05 1.30 7.57 -51.93 -0.39 0.90 16 34 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 35 H 0.04 0.93 2.26 -51.93 -0.12 0.81 16 36 H 0.02 0.45 6.20 -51.93 -0.32 0.13 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.11 1.52 5.77 -51.93 -0.30 1.22 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 1.27 7.49 -51.93 -0.39 0.88 16 LS Contribution 330.79 15.07 4.99 4.99 Total: -1.00 -32.19 330.79 -7.01 -39.20 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.85 Total: 0.15 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -1.47 Total: 0.69 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.03 Total: -44.96 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.16 Total: -18.54 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -3.87 Total: 18.48 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.19 -7.01 -39.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420079291.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.757 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds