Wall clock time and date at job start Tue Mar 31 2020 07:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.65444 * 2 1 4 4 C 1.51579 * 110.59843 * 237.08662 * 2 1 3 5 5 O 1.21238 * 127.15880 * 61.50425 * 4 2 1 6 6 N 1.34768 * 105.68553 * 241.47274 * 4 2 1 7 7 C 1.46495 * 124.18107 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.46975 * 269.94732 * 7 6 4 9 9 C 1.53001 * 109.47426 * 299.99883 * 8 7 6 10 10 C 1.52997 * 109.47175 * 59.99838 * 8 7 6 11 11 C 1.50704 * 109.47333 * 179.97438 * 8 7 6 12 12 H 1.08003 * 119.99866 * 1.20126 * 11 8 7 13 13 C 1.37875 * 120.00478 * 181.19138 * 11 8 7 14 14 N 1.31514 * 120.00254 * 194.18495 * 13 11 8 15 15 Si 1.86800 * 119.99733 * 14.19492 * 13 11 8 16 16 H 1.48508 * 109.47442 * 84.53194 * 15 13 11 17 17 H 1.48500 * 109.47152 * 204.53619 * 15 13 11 18 18 H 1.48510 * 109.47154 * 324.53400 * 15 13 11 19 19 C 1.33799 * 111.64100 * 359.97438 * 6 4 2 20 20 O 1.21540 * 123.76349 * 180.26462 * 19 6 4 21 21 N 1.34519 * 112.45821 * 359.97438 * 19 6 4 22 22 C 1.46503 * 126.69038 * 179.97438 * 21 19 6 23 23 C 1.53786 * 113.60930 * 37.52775 * 22 21 19 24 24 C 1.53785 * 87.07990 * 220.01390 * 23 22 21 25 25 C 1.53782 * 113.61529 * 300.03187 * 22 21 19 26 26 H 1.09002 * 109.47350 * 297.08742 * 1 2 3 27 27 H 1.09000 * 109.47632 * 57.08789 * 1 2 3 28 28 H 1.09006 * 109.47383 * 177.08974 * 1 2 3 29 29 H 1.08998 * 109.47086 * 29.94582 * 7 6 4 30 30 H 1.08993 * 109.47383 * 149.94760 * 7 6 4 31 31 H 1.08995 * 109.46912 * 69.48651 * 9 8 7 32 32 H 1.08996 * 109.47305 * 189.48943 * 9 8 7 33 33 H 1.09003 * 109.46463 * 309.48728 * 9 8 7 34 34 H 1.09008 * 109.47219 * 60.00208 * 10 8 7 35 35 H 1.09000 * 109.47127 * 179.97438 * 10 8 7 36 36 H 1.08996 * 109.47362 * 299.99885 * 10 8 7 37 37 H 0.96996 * 119.99807 * 180.02562 * 14 13 11 38 38 H 1.09000 * 112.84891 * 168.83069 * 22 21 19 39 39 H 1.08999 * 113.61950 * 334.56345 * 23 22 21 40 40 H 1.09003 * 113.61450 * 105.47015 * 23 22 21 41 41 H 1.08999 * 113.62059 * 270.88858 * 24 23 22 42 42 H 1.08997 * 113.61179 * 139.97701 * 24 23 22 43 43 H 1.08998 * 113.61192 * 254.52627 * 25 22 21 44 44 H 1.08995 * 113.61628 * 25.43212 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 6 2.0633 -0.7710 -1.1911 5 8 1.8894 -0.5187 -2.3642 6 7 2.7715 -1.7948 -0.6750 7 6 3.4685 -2.8015 -1.4793 8 6 2.5253 -3.9733 -1.7588 9 6 2.0806 -4.5972 -0.4344 10 6 1.2989 -3.4700 -2.5226 11 6 3.2420 -5.0087 -2.5868 12 1 4.2737 -4.8560 -2.8675 13 6 2.5809 -6.1509 -2.9857 14 7 3.2603 -7.1727 -3.4588 15 14 0.7200 -6.2470 -2.8543 16 1 0.1062 -5.6307 -4.0580 17 1 0.3032 -7.6692 -2.7592 18 1 0.2710 -5.5174 -1.6412 19 6 2.7603 -1.7777 0.6628 20 8 3.3331 -2.5973 1.3537 21 7 2.0495 -0.7484 1.1576 22 6 1.8325 -0.4341 2.5720 23 6 3.0607 -0.7021 3.4579 24 6 2.0830 -1.2464 4.5127 25 6 1.1244 -1.5554 3.3505 26 1 -0.3634 0.4679 0.9149 27 1 -0.3634 0.5584 -0.8627 28 1 -0.3634 -1.0264 -0.0522 29 1 3.7852 -2.3571 -2.4229 30 1 4.3421 -3.1601 -0.9352 31 1 1.4207 -3.9058 0.0894 32 1 1.5490 -5.5281 -0.6317 33 1 2.9556 -4.8022 0.1824 34 1 1.6156 -3.0255 -3.4662 35 1 0.6272 -4.3049 -2.7221 36 1 0.7803 -2.7210 -1.9241 37 1 2.7951 -7.9761 -3.7398 38 1 1.3894 0.5501 2.7237 39 1 3.7335 -1.4588 3.0544 40 1 3.5799 0.2041 3.7702 41 1 1.7090 -0.4841 5.1962 42 1 2.4465 -2.1360 5.0271 43 1 0.0804 -1.3382 3.5762 44 1 1.2678 -2.5454 2.9177 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420079291.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:59 Heat of formation + Delta-G solvation = -20.651310 kcal Electronic energy + Delta-G solvation = -25992.635436 eV Core-core repulsion = 22525.846578 eV Total energy + Delta-G solvation = -3466.788858 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.53155 -40.19420 -39.07999 -38.15031 -37.17581 -35.16514 -33.64848 -31.44765 -28.85431 -28.17706 -27.12216 -26.51369 -25.82409 -25.52194 -22.66934 -22.34892 -20.87457 -19.90679 -18.47241 -18.29413 -18.04663 -17.45678 -16.97246 -16.90071 -16.29731 -15.84788 -15.49034 -15.31387 -15.07941 -14.77371 -14.73322 -14.30360 -14.17907 -14.01038 -13.81575 -13.50040 -13.22387 -13.20305 -12.84623 -12.79139 -12.69850 -12.53308 -12.07719 -12.04667 -11.87912 -11.76260 -11.42020 -11.23565 -11.10055 -11.01663 -10.86774 -10.64628 -10.28817 -9.81709 -8.36339 -6.36196 0.67586 1.16784 1.27624 1.29832 1.40341 2.02484 2.07986 2.27503 2.98989 3.03476 3.57727 3.67442 3.83477 3.96104 4.01723 4.03636 4.06016 4.12140 4.25398 4.32769 4.48131 4.61136 4.66259 4.69546 4.74887 4.78372 4.79939 4.83433 4.87511 4.95221 5.01454 5.10435 5.14544 5.14968 5.18750 5.21100 5.32475 5.50258 5.62652 5.68519 5.74946 6.22849 6.28961 6.44967 6.66093 7.15527 7.28250 8.80240 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019795 B = 0.005726 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.180635 B = 4888.945950 C = 5369.002087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.098 3.902 3 H 0.162 0.838 4 C 0.511 3.489 5 O -0.496 6.496 6 N -0.578 5.578 7 C 0.149 3.851 8 C 0.024 3.976 9 C -0.117 4.117 10 C -0.131 4.131 11 C -0.512 4.512 12 H 0.042 0.958 13 C 0.027 3.973 14 N -0.937 5.937 15 Si 0.937 3.063 16 H -0.279 1.279 17 H -0.307 1.307 18 H -0.228 1.228 19 C 0.693 3.307 20 O -0.565 6.565 21 N -0.606 5.606 22 C 0.158 3.842 23 C -0.162 4.162 24 C -0.127 4.127 25 C -0.156 4.156 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.030 0.970 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.049 0.951 35 H 0.032 0.968 36 H 0.043 0.957 37 H 0.266 0.734 38 H 0.165 0.835 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.113 0.887 42 H 0.059 0.941 43 H 0.094 0.906 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.368 20.650 15.447 27.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.008 4.008 3 H 0.179 0.821 4 C 0.300 3.700 5 O -0.367 6.367 6 N -0.322 5.322 7 C 0.028 3.972 8 C 0.023 3.977 9 C -0.175 4.175 10 C -0.188 4.188 11 C -0.551 4.551 12 H 0.060 0.940 13 C -0.172 4.172 14 N -0.576 5.576 15 Si 0.767 3.233 16 H -0.206 1.206 17 H -0.236 1.236 18 H -0.152 1.152 19 C 0.396 3.604 20 O -0.441 6.441 21 N -0.344 5.344 22 C 0.058 3.942 23 C -0.201 4.201 24 C -0.165 4.165 25 C -0.194 4.194 26 H 0.129 0.871 27 H 0.110 0.890 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.182 0.818 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.132 0.868 42 H 0.077 0.923 43 H 0.112 0.888 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.122 20.174 15.202 26.533 hybrid contribution -0.134 -1.210 -0.757 1.434 sum -8.255 18.963 14.444 25.227 Atomic orbital electron populations 1.21963 0.88986 1.03106 1.06024 1.22358 0.98808 0.98437 0.81159 0.82086 1.21601 0.76959 0.80597 0.90811 1.90774 1.57614 1.70233 1.18116 1.46672 1.49133 1.28170 1.08195 1.21515 0.94670 0.87022 0.94013 1.18778 0.93058 0.92660 0.93247 1.22023 0.99342 0.99061 0.97048 1.22176 0.97841 0.98562 1.00197 1.20914 0.98378 1.02829 1.32937 0.93976 1.25668 1.02528 0.94536 0.94452 1.70070 1.37619 1.04847 1.45083 0.86426 0.81805 0.74945 0.80150 1.20649 1.23620 1.15242 1.16088 0.80407 0.82584 0.81296 1.90901 1.49638 1.42492 1.61096 1.47996 1.52300 1.27049 1.07056 1.22994 0.97763 1.00713 0.72734 1.23464 0.97474 1.02376 0.96755 1.22654 0.96273 1.01723 0.95826 1.23380 1.00472 0.98465 0.97123 0.87073 0.88967 0.93735 0.89825 0.90470 0.95111 0.94194 0.94085 0.93215 0.94999 0.93820 0.92500 0.81753 0.91223 0.89248 0.86829 0.92262 0.88787 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.47 71.98 0.68 -1.30 16 2 C 0.10 1.81 4.04 44.37 0.18 1.99 16 3 H 0.16 1.76 8.14 -2.39 -0.02 1.74 16 4 C 0.51 15.29 5.99 87.94 0.53 15.82 16 5 O -0.50 -17.36 16.88 -2.90 -0.05 -17.41 16 6 N -0.58 -20.13 2.15 -773.14 -1.67 -21.79 16 7 C 0.15 6.27 4.66 86.38 0.40 6.68 16 8 C 0.02 1.15 0.57 -52.93 -0.03 1.12 16 9 C -0.12 -5.47 6.51 71.98 0.47 -5.00 16 10 C -0.13 -5.86 6.71 71.98 0.48 -5.38 16 11 C -0.51 -29.43 8.62 25.60 0.22 -29.21 16 12 H 0.04 2.64 7.99 -2.91 -0.02 2.62 16 13 C 0.03 1.57 5.32 84.65 0.45 2.02 16 14 N -0.94 -59.26 13.96 21.45 0.30 -58.96 16 15 Si 0.94 46.32 22.79 68.60 1.56 47.88 16 16 H -0.28 -13.47 7.10 99.48 0.71 -12.77 16 17 H -0.31 -15.24 7.11 99.48 0.71 -14.53 16 18 H -0.23 -10.34 4.65 99.48 0.46 -9.88 16 19 C 0.69 22.62 6.41 179.44 1.15 23.77 16 20 O -0.57 -22.16 13.00 -3.84 -0.05 -22.21 16 21 N -0.61 -13.28 2.93 -790.91 -2.32 -15.60 16 22 C 0.16 2.40 4.55 45.52 0.21 2.60 16 23 C -0.16 -2.93 7.51 31.12 0.23 -2.69 16 24 C -0.13 -1.88 8.08 31.12 0.25 -1.63 16 25 C -0.16 -2.73 7.66 31.12 0.24 -2.49 16 26 H 0.11 0.77 8.13 -2.39 -0.02 0.75 16 27 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.08 3.51 8.00 -2.39 -0.02 3.50 16 30 H 0.08 3.39 7.86 -2.39 -0.02 3.38 16 31 H 0.03 1.30 6.97 -2.39 -0.02 1.28 16 32 H 0.04 1.92 4.30 -2.39 -0.01 1.91 16 33 H 0.04 1.99 7.57 -2.39 -0.02 1.97 16 34 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.03 1.47 2.26 -2.39 -0.01 1.46 16 36 H 0.04 1.74 6.20 -2.39 -0.01 1.72 16 37 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 38 H 0.17 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 1.91 5.77 -2.39 -0.01 1.89 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.05 1.35 7.49 -2.39 -0.02 1.33 16 Total: -1.00 -74.90 330.79 4.00 -70.91 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.75 Total: 10.88 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 5.46 Total: 6.30 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -3.69 Total: -96.35 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -0.10 Total: -39.62 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.56 Total: 47.88 kcal Total: -74.90 4.00 -70.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420079291.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.256 kcal (2) G-P(sol) polarization free energy of solvation -74.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds