Wall clock time and date at job start Tue Mar 31 2020 06:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.46837 * 2 1 4 4 O 1.21276 * 120.00179 * 0.02562 * 3 2 1 5 5 N 1.34774 * 119.99989 * 180.02562 * 3 2 1 6 6 C 1.47025 * 125.64832 * 0.02574 * 5 3 2 7 7 C 1.54329 * 107.27010 * 181.02472 * 6 5 3 8 8 C 1.55150 * 102.94457 * 22.19260 * 7 6 5 9 9 H 1.08995 * 111.00669 * 82.57319 * 8 7 6 10 10 C 1.50705 * 111.00715 * 206.38956 * 8 7 6 11 11 O 1.21278 * 120.00146 * 107.09040 * 10 8 7 12 12 N 1.34783 * 119.99551 * 287.09835 * 10 8 7 13 13 C 1.46493 * 119.99572 * 185.35337 * 12 10 8 14 14 C 1.53006 * 109.46707 * 185.19570 * 13 12 10 15 15 C 1.50698 * 115.55262 * 57.87737 * 14 13 12 16 16 H 1.07994 * 119.99803 * 264.53833 * 15 14 13 17 17 C 1.37874 * 120.00203 * 84.53578 * 15 14 13 18 18 N 1.31523 * 119.99879 * 1.93659 * 17 15 14 19 19 Si 1.86800 * 120.00200 * 181.93740 * 17 15 14 20 20 H 1.48497 * 109.46939 * 59.99915 * 19 17 15 21 21 H 1.48500 * 109.47169 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46953 * 299.99868 * 19 17 15 23 23 C 1.53000 * 117.49542 * 272.20060 * 14 13 12 24 24 C 1.53003 * 117.49742 * 203.54562 * 14 13 12 25 25 C 1.47430 * 125.65205 * 179.71963 * 5 3 2 26 26 H 1.08997 * 109.47376 * 299.99732 * 1 2 3 27 27 H 1.08998 * 109.47227 * 60.00251 * 1 2 3 28 28 H 1.09002 * 109.46985 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47519 * 120.00211 * 2 1 3 30 30 H 1.08997 * 109.47376 * 240.00267 * 2 1 3 31 31 H 1.09002 * 109.88076 * 300.43599 * 6 5 3 32 32 H 1.08994 * 109.88638 * 61.60483 * 6 5 3 33 33 H 1.09000 * 110.71982 * 140.55646 * 7 6 5 34 34 H 1.08999 * 110.71800 * 263.82653 * 7 6 5 35 35 H 0.96999 * 119.99706 * 5.35218 * 12 10 8 36 36 H 1.09000 * 109.47504 * 305.19306 * 13 12 10 37 37 H 1.09004 * 109.47573 * 65.19764 * 13 12 10 38 38 H 0.96996 * 120.00175 * 185.01631 * 18 17 15 39 39 H 1.08993 * 117.50422 * 0.02562 * 23 14 13 40 40 H 1.09007 * 117.49622 * 145.02059 * 23 14 13 41 41 H 1.09001 * 117.50124 * 214.98151 * 24 14 13 42 42 H 1.09003 * 117.49723 * 359.97438 * 24 14 13 43 43 H 1.09000 * 110.36548 * 274.74758 * 25 5 3 44 44 H 1.09006 * 110.36215 * 37.06666 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3573 1.6672 -0.0005 6 6 4.4181 0.6492 -0.0017 7 6 5.7689 1.3951 0.0245 8 6 5.3894 2.7809 0.6099 9 1 5.3415 2.7454 1.6982 10 6 6.3527 3.8443 0.1489 11 8 6.0035 4.6627 -0.6752 12 7 7.6023 3.8855 0.6522 13 6 8.5002 4.9861 0.2940 14 6 9.8859 4.7282 0.8894 15 6 10.5427 3.4376 0.4722 16 1 10.4568 2.5613 1.0974 17 6 11.2533 3.3757 -0.7077 18 7 11.3901 4.4526 -1.4503 19 14 12.0218 1.7624 -1.2517 20 1 10.9585 0.7393 -1.4191 21 1 12.7266 1.9606 -2.5437 22 1 12.9916 1.3049 -0.2244 23 6 10.1471 5.2261 2.3123 24 6 10.7918 5.9392 1.1211 25 6 3.9831 3.0020 -0.0064 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 4.3264 0.0174 0.8818 32 1 4.3476 0.0413 -0.9036 33 1 6.4794 0.8836 0.6738 34 1 6.1714 1.4992 -0.9831 35 1 7.9070 3.1864 1.2517 36 1 8.5779 5.0533 -0.7912 37 1 8.1037 5.9217 0.6885 38 1 11.8266 4.3937 -2.3144 39 1 9.3319 5.7371 2.8244 40 1 10.7944 4.6204 2.9466 41 1 11.8629 5.8024 0.9721 42 1 10.4008 6.9196 0.8490 43 1 4.0681 3.3766 -1.0265 44 1 3.4055 3.6945 0.6060 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431148799.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:06 Heat of formation + Delta-G solvation = -59.934932 kcal Electronic energy + Delta-G solvation = -23770.305003 eV Core-core repulsion = 20301.812679 eV Total energy + Delta-G solvation = -3468.492324 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.40360 -39.13519 -37.28838 -36.55099 -33.40147 -33.10256 -32.03285 -31.67363 -29.27629 -26.77865 -25.57839 -24.81209 -22.83058 -22.08929 -21.18247 -19.69237 -19.30890 -19.15052 -17.46897 -17.24238 -16.27650 -15.90419 -15.39971 -15.03197 -14.92490 -14.62381 -14.49255 -13.84230 -13.64216 -13.58900 -13.05010 -12.97452 -12.71766 -12.51426 -12.36059 -12.08764 -11.91656 -11.74410 -11.66857 -11.42214 -11.22324 -11.01914 -10.99079 -10.95135 -10.60603 -10.29539 -9.96292 -9.67370 -9.34557 -9.11020 -8.76012 -8.53732 -8.37542 -8.09164 -6.13296 -4.23149 2.51415 2.78853 3.05789 3.21448 3.28299 3.28998 3.78415 4.21182 4.29981 4.40131 4.62061 4.74646 4.83101 4.89225 5.10740 5.14675 5.16063 5.22402 5.25257 5.39424 5.45745 5.53478 5.67021 5.68849 5.82937 5.90062 5.95612 5.98243 6.02774 6.16962 6.27331 6.43181 6.47258 6.65427 6.82048 7.06697 7.21264 7.34692 7.36911 7.46974 7.74677 8.03759 8.21539 8.27334 8.77474 8.79434 9.44438 10.94797 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021427 B = 0.003428 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.471180 B = 8165.610581 C = 8950.905515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.139 4.139 3 C 0.525 3.475 4 O -0.542 6.542 5 N -0.622 5.622 6 C 0.102 3.898 7 C -0.121 4.121 8 C -0.124 4.124 9 H 0.106 0.894 10 C 0.515 3.485 11 O -0.552 6.552 12 N -0.696 5.696 13 C 0.162 3.838 14 C 0.025 3.975 15 C -0.500 4.500 16 H 0.059 0.941 17 C 0.074 3.926 18 N -0.874 5.874 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.212 4.212 24 C -0.145 4.145 25 C 0.125 3.875 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.401 0.599 36 H 0.072 0.928 37 H 0.036 0.964 38 H 0.262 0.738 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.972 -10.415 4.843 17.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.314 3.686 4 O -0.419 6.419 5 N -0.357 5.357 6 C -0.021 4.021 7 C -0.159 4.159 8 C -0.146 4.146 9 H 0.125 0.875 10 C 0.299 3.701 11 O -0.431 6.431 12 N -0.344 5.344 13 C 0.039 3.961 14 C 0.025 3.975 15 C -0.538 4.538 16 H 0.077 0.923 17 C -0.130 4.130 18 N -0.509 5.509 19 Si 0.717 3.283 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.249 4.249 24 C -0.183 4.183 25 C 0.002 3.998 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.235 0.765 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.567 -9.237 4.110 16.920 hybrid contribution 0.891 -1.197 -0.114 1.496 sum -12.676 -10.434 3.997 16.898 Atomic orbital electron populations 1.21537 0.93028 1.01509 1.03409 1.21613 0.98483 0.93574 1.04256 1.20462 0.80266 0.91942 0.75911 1.90711 1.54312 1.46806 1.50075 1.48594 1.05212 1.08354 1.73500 1.22086 0.86723 0.91322 1.01995 1.22649 0.96266 0.93635 1.03392 1.22492 0.94859 0.95257 1.02011 0.87547 1.19989 0.82960 0.85309 0.81804 1.90683 1.77657 1.41707 1.33057 1.45889 1.12065 1.28038 1.48444 1.20984 0.88504 0.85836 1.00777 1.19032 0.91408 0.95285 0.91801 1.20281 1.32397 0.94540 1.06564 0.92278 1.24981 0.95159 0.96012 0.96841 1.69977 1.42372 1.27331 1.11267 0.86710 0.79551 0.84000 0.78019 1.20210 1.21275 1.20222 1.23050 1.03244 1.06034 0.92604 1.22474 0.99509 0.95495 1.00801 1.22077 0.90722 0.84299 1.02659 0.91985 0.91963 0.92087 0.88982 0.88981 0.90937 0.90960 0.88723 0.89509 0.76471 0.90957 0.94611 0.92763 0.91683 0.90393 0.89601 0.91769 0.89590 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.20 37.15 0.34 -0.78 16 2 C -0.14 -1.12 5.61 -27.89 -0.16 -1.28 16 3 C 0.53 6.55 7.85 -10.99 -0.09 6.47 16 4 O -0.54 -8.98 16.24 5.56 0.09 -8.89 16 5 N -0.62 -7.32 3.33 -170.37 -0.57 -7.89 16 6 C 0.10 0.88 6.49 -3.06 -0.02 0.86 16 7 C -0.12 -1.25 6.40 -24.90 -0.16 -1.41 16 8 C -0.12 -1.57 3.45 -89.51 -0.31 -1.87 16 9 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 10 C 0.52 8.94 7.14 -10.98 -0.08 8.87 16 11 O -0.55 -11.82 15.67 5.56 0.09 -11.73 16 12 N -0.70 -12.55 5.37 -60.29 -0.32 -12.88 16 13 C 0.16 3.51 5.57 -4.04 -0.02 3.48 16 14 C 0.03 0.57 1.50 -155.66 -0.23 0.34 16 15 C -0.50 -12.28 8.38 -34.44 -0.29 -12.57 16 16 H 0.06 1.41 7.81 -52.49 -0.41 1.00 16 17 C 0.07 1.91 5.43 -17.82 -0.10 1.81 16 18 N -0.87 -23.69 12.73 55.43 0.71 -22.98 16 19 Si 0.89 19.81 29.54 -169.99 -5.02 14.79 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 C -0.21 -4.24 9.94 -26.70 -0.27 -4.51 16 24 C -0.14 -3.22 9.27 -26.69 -0.25 -3.47 16 25 C 0.12 1.73 6.07 -2.41 -0.01 1.72 16 26 H 0.06 0.57 8.10 -51.93 -0.42 0.14 16 27 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.04 8.03 -51.93 -0.42 0.62 16 35 H 0.40 6.47 8.25 -40.82 -0.34 6.14 16 36 H 0.07 1.82 8.09 -51.93 -0.42 1.40 16 37 H 0.04 0.76 8.11 -51.93 -0.42 0.34 16 38 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 42 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.09 1.38 7.34 -51.93 -0.38 0.99 16 44 H 0.08 1.19 8.03 -51.93 -0.42 0.77 16 LS Contribution 366.24 15.07 5.52 5.52 Total: -1.00 -31.18 366.24 -8.58 -39.76 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -7.43 Total: 6.65 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -1.64 Total: -2.35 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: -0.18 Total: -43.74 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: 0.18 Total: -20.62 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.18 -8.58 -39.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431148799.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.174 kcal (2) G-P(sol) polarization free energy of solvation -31.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds