Wall clock time and date at job start Tue Mar 31 2020 06:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50692 * 109.46921 * 2 1 4 4 O 1.21282 * 120.00477 * 0.02562 * 3 2 1 5 5 N 1.34787 * 119.99940 * 179.97438 * 3 2 1 6 6 C 1.47024 * 125.64538 * 359.69488 * 5 3 2 7 7 C 1.54330 * 107.26188 * 178.84917 * 6 5 3 8 8 C 1.55157 * 103.02427 * 338.13800 * 7 6 5 9 9 H 1.08996 * 111.00215 * 277.23484 * 8 7 6 10 10 C 1.50694 * 111.03522 * 153.39817 * 8 7 6 11 11 O 1.21286 * 119.99529 * 247.78550 * 10 8 7 12 12 N 1.34776 * 120.00401 * 67.78905 * 10 8 7 13 13 C 1.46499 * 119.99972 * 179.97438 * 12 10 8 14 14 C 1.53007 * 109.46755 * 178.27775 * 13 12 10 15 15 C 1.50699 * 115.54811 * 65.14400 * 14 13 12 16 16 H 1.08005 * 120.00005 * 265.40109 * 15 14 13 17 17 C 1.37871 * 120.00163 * 85.39997 * 15 14 13 18 18 N 1.31512 * 120.00130 * 353.55738 * 17 15 14 19 19 Si 1.86803 * 119.99971 * 173.55269 * 17 15 14 20 20 H 1.48496 * 109.47452 * 90.00225 * 19 17 15 21 21 H 1.48502 * 109.47036 * 210.00178 * 19 17 15 22 22 H 1.48504 * 109.47004 * 329.99991 * 19 17 15 23 23 C 1.52992 * 117.49958 * 279.47119 * 14 13 12 24 24 C 1.52993 * 117.49472 * 210.80961 * 14 13 12 25 25 C 1.47416 * 125.64847 * 180.02562 * 5 3 2 26 26 H 1.08996 * 109.47299 * 60.00020 * 1 2 3 27 27 H 1.09005 * 109.46909 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47161 * 299.99977 * 1 2 3 29 29 H 1.09002 * 109.47161 * 240.00023 * 2 1 3 30 30 H 1.09002 * 109.46753 * 120.00399 * 2 1 3 31 31 H 1.09005 * 109.87840 * 298.39695 * 6 5 3 32 32 H 1.08994 * 109.88331 * 59.55726 * 6 5 3 33 33 H 1.09008 * 110.84615 * 219.66716 * 7 6 5 34 34 H 1.08997 * 110.66486 * 96.52497 * 7 6 5 35 35 H 0.97001 * 119.99910 * 359.97438 * 12 10 8 36 36 H 1.09000 * 109.46954 * 298.27618 * 13 12 10 37 37 H 1.08993 * 109.47144 * 58.27974 * 13 12 10 38 38 H 0.97000 * 120.00364 * 185.06853 * 18 17 15 39 39 H 1.09002 * 117.49758 * 359.97438 * 23 14 13 40 40 H 1.08995 * 117.50185 * 145.02650 * 23 14 13 41 41 H 1.09007 * 117.49843 * 214.98204 * 24 14 13 42 42 H 1.08998 * 117.50455 * 359.97438 * 24 14 13 43 43 H 1.09006 * 110.36725 * 322.92646 * 25 5 3 44 44 H 1.08999 * 110.37119 * 85.14515 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3575 1.6671 0.0005 6 6 4.4182 0.6490 0.0075 7 6 5.7689 1.3948 -0.0242 8 6 5.3896 2.7805 -0.6101 9 1 5.3417 2.7447 -1.6984 10 6 6.3522 3.8445 -0.1493 11 8 5.9756 4.7182 0.6029 12 7 7.6314 3.8253 -0.5732 13 6 8.5670 4.8600 -0.1256 14 6 9.9522 4.5838 -0.7138 15 6 10.0533 4.6851 -2.2140 16 1 9.9501 3.7993 -2.8232 17 6 10.2776 5.9085 -2.8088 18 7 10.2771 7.0037 -2.0807 19 14 10.5823 6.0105 -4.6490 20 1 9.2880 6.1829 -5.3563 21 1 11.4642 7.1690 -4.9412 22 1 11.2370 4.7607 -5.1123 23 6 10.8192 3.5336 -0.0166 24 6 11.1677 5.0190 0.1072 25 6 3.9832 3.0018 0.0011 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 4.3467 0.0455 0.9124 32 1 4.3272 0.0129 -0.8729 33 1 6.4795 0.8830 -0.6734 34 1 6.1743 1.4994 0.9821 35 1 7.9326 3.1263 -1.1746 36 1 8.2173 5.8360 -0.4621 37 1 8.6258 4.8504 0.9627 38 1 10.3614 7.8703 -2.5081 39 1 10.4029 3.0397 0.8614 40 1 11.4631 2.9162 -0.6428 41 1 12.0407 5.3781 -0.4378 42 1 10.9806 5.5024 1.0660 43 1 3.4062 3.6916 -0.6149 44 1 4.0656 3.3818 1.0194 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431148800.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:08 Heat of formation + Delta-G solvation = -60.036100 kcal Electronic energy + Delta-G solvation = -23671.648357 eV Core-core repulsion = 20203.151646 eV Total energy + Delta-G solvation = -3468.496711 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.42897 -39.15276 -37.31235 -36.57091 -33.41858 -33.11806 -32.03867 -31.69768 -29.31524 -26.78574 -25.58647 -24.81417 -22.85779 -22.13786 -21.21529 -19.70158 -19.33420 -19.15470 -17.48924 -17.27020 -16.26565 -15.90969 -15.41749 -15.05482 -14.91801 -14.77021 -14.46483 -13.86673 -13.68224 -13.50775 -13.16653 -12.92097 -12.76652 -12.53295 -12.38473 -12.12608 -11.90335 -11.75125 -11.62836 -11.43563 -11.29153 -11.04502 -11.01271 -10.96955 -10.57183 -10.32771 -9.97754 -9.72722 -9.37877 -9.02911 -8.78945 -8.55327 -8.35320 -8.15246 -6.13098 -4.22441 2.49908 2.76545 3.05070 3.21969 3.30473 3.31402 3.76850 4.17439 4.30418 4.34739 4.58046 4.70030 4.80880 4.86086 5.07946 5.12526 5.14966 5.20787 5.24465 5.35229 5.43042 5.52006 5.60872 5.65845 5.77180 5.87182 5.94351 5.96597 6.00915 6.14273 6.27365 6.40637 6.49855 6.62832 6.82054 7.03982 7.19651 7.34729 7.37159 7.42639 7.75816 8.02378 8.19754 8.27644 8.76008 8.79637 9.44996 10.94642 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023217 B = 0.003143 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.732506 B = 8905.512440 C = 9286.485969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.139 4.139 3 C 0.525 3.475 4 O -0.540 6.540 5 N -0.622 5.622 6 C 0.102 3.898 7 C -0.121 4.121 8 C -0.125 4.125 9 H 0.109 0.891 10 C 0.515 3.485 11 O -0.552 6.552 12 N -0.698 5.698 13 C 0.162 3.838 14 C 0.028 3.972 15 C -0.503 4.503 16 H 0.060 0.940 17 C 0.074 3.926 18 N -0.874 5.874 19 Si 0.890 3.110 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.210 4.210 24 C -0.148 4.148 25 C 0.125 3.875 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.401 0.599 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.262 0.738 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.433 -16.226 3.114 19.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.314 3.686 4 O -0.417 6.417 5 N -0.357 5.357 6 C -0.021 4.021 7 C -0.159 4.159 8 C -0.147 4.147 9 H 0.127 0.873 10 C 0.299 3.701 11 O -0.431 6.431 12 N -0.346 5.346 13 C 0.039 3.961 14 C 0.027 3.973 15 C -0.540 4.540 16 H 0.078 0.922 17 C -0.130 4.130 18 N -0.509 5.509 19 Si 0.717 3.283 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.247 4.247 24 C -0.186 4.186 25 C 0.003 3.997 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.235 0.765 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.095 -14.897 3.652 18.931 hybrid contribution 0.572 -0.125 -1.360 1.481 sum -10.523 -15.022 2.292 18.484 Atomic orbital electron populations 1.21543 0.93011 1.01518 1.03448 1.21612 0.98512 0.93550 1.04213 1.20470 0.80266 0.91950 0.75933 1.90720 1.54290 1.46793 1.49913 1.48592 1.05206 1.08319 1.73608 1.22066 0.86720 0.91335 1.01974 1.22636 0.96401 0.93895 1.02964 1.22462 0.94872 0.94965 1.02391 0.87267 1.19978 0.82949 0.85775 0.81370 1.90689 1.77517 1.38047 1.36895 1.45947 1.09295 1.30810 1.48537 1.21025 0.88967 0.90652 0.95420 1.19022 0.87022 0.97389 0.93838 1.20329 1.51067 0.93808 0.88838 0.92187 1.24990 0.94308 0.95852 0.97867 1.69968 1.48211 0.97603 1.35149 0.86634 0.78322 0.77786 0.85542 1.20628 1.21133 1.19800 1.23021 1.06999 0.92541 1.02180 1.22495 1.01665 0.94549 0.99935 1.22020 0.90850 0.84266 1.02583 0.91949 0.92078 0.91960 0.88974 0.89020 0.90994 0.90928 0.88824 0.89818 0.76548 0.90886 0.94410 0.92767 0.91660 0.90346 0.89806 0.91659 0.89920 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.20 37.16 0.34 -0.76 16 2 C -0.14 -1.08 5.61 -27.88 -0.16 -1.23 16 3 C 0.52 6.45 7.85 -10.99 -0.09 6.36 16 4 O -0.54 -8.95 16.24 5.56 0.09 -8.86 16 5 N -0.62 -7.11 3.33 -170.51 -0.57 -7.68 16 6 C 0.10 0.80 6.49 -3.06 -0.02 0.78 16 7 C -0.12 -1.09 6.41 -24.89 -0.16 -1.25 16 8 C -0.12 -1.56 3.44 -89.61 -0.31 -1.86 16 9 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 10 C 0.52 8.86 7.15 -10.99 -0.08 8.79 16 11 O -0.55 -11.75 15.72 5.55 0.09 -11.67 16 12 N -0.70 -12.48 5.47 -60.29 -0.33 -12.81 16 13 C 0.16 3.52 5.50 -4.04 -0.02 3.50 16 14 C 0.03 0.63 1.38 -155.66 -0.21 0.41 16 15 C -0.50 -12.48 8.63 -34.44 -0.30 -12.78 16 16 H 0.06 1.45 7.82 -52.48 -0.41 1.04 16 17 C 0.07 1.92 5.39 -17.82 -0.10 1.83 16 18 N -0.87 -23.85 12.91 55.43 0.72 -23.13 16 19 Si 0.89 20.11 29.55 -169.99 -5.02 15.09 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 C -0.21 -4.14 9.96 -26.70 -0.27 -4.40 16 24 C -0.15 -3.28 9.42 -26.70 -0.25 -3.53 16 25 C 0.13 1.72 6.02 -2.52 -0.02 1.71 16 26 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.08 0.81 8.03 -51.93 -0.42 0.39 16 35 H 0.40 6.39 8.37 -40.82 -0.34 6.05 16 36 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16 37 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16 38 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 41 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 42 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 43 H 0.08 1.25 8.04 -51.93 -0.42 0.84 16 44 H 0.08 1.31 7.41 -51.93 -0.38 0.92 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -31.60 366.95 -8.57 -40.16 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.44 Total: 5.80 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -1.63 Total: -2.43 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: -0.18 Total: -43.61 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: 0.18 Total: -20.53 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.60 -8.57 -40.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431148800.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.874 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds