Wall clock time and date at job start Tue Mar 31 2020 06:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50692 * 109.46921 * 2 1 4 4 O 1.21282 * 120.00477 * 0.02562 * 3 2 1 5 5 N 1.34787 * 119.99940 * 179.97438 * 3 2 1 6 6 C 1.47024 * 125.64538 * 359.69488 * 5 3 2 7 7 C 1.54330 * 107.26188 * 178.84917 * 6 5 3 8 8 C 1.55157 * 103.02427 * 338.13800 * 7 6 5 9 9 H 1.08996 * 111.00215 * 277.23484 * 8 7 6 10 10 C 1.50694 * 111.03522 * 153.39817 * 8 7 6 11 11 O 1.21286 * 119.99529 * 247.78550 * 10 8 7 12 12 N 1.34776 * 120.00401 * 67.78905 * 10 8 7 13 13 C 1.46499 * 119.99972 * 179.97438 * 12 10 8 14 14 C 1.53007 * 109.46755 * 178.27775 * 13 12 10 15 15 C 1.50699 * 115.54811 * 65.14400 * 14 13 12 16 16 H 1.08005 * 120.00005 * 265.40109 * 15 14 13 17 17 C 1.37871 * 120.00163 * 85.39997 * 15 14 13 18 18 N 1.31512 * 120.00130 * 353.55738 * 17 15 14 19 19 Si 1.86803 * 119.99971 * 173.55269 * 17 15 14 20 20 H 1.48496 * 109.47452 * 90.00225 * 19 17 15 21 21 H 1.48502 * 109.47036 * 210.00178 * 19 17 15 22 22 H 1.48504 * 109.47004 * 329.99991 * 19 17 15 23 23 C 1.52992 * 117.49958 * 279.47119 * 14 13 12 24 24 C 1.52993 * 117.49472 * 210.80961 * 14 13 12 25 25 C 1.47416 * 125.64847 * 180.02562 * 5 3 2 26 26 H 1.08996 * 109.47299 * 60.00020 * 1 2 3 27 27 H 1.09005 * 109.46909 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47161 * 299.99977 * 1 2 3 29 29 H 1.09002 * 109.47161 * 240.00023 * 2 1 3 30 30 H 1.09002 * 109.46753 * 120.00399 * 2 1 3 31 31 H 1.09005 * 109.87840 * 298.39695 * 6 5 3 32 32 H 1.08994 * 109.88331 * 59.55726 * 6 5 3 33 33 H 1.09008 * 110.84615 * 219.66716 * 7 6 5 34 34 H 1.08997 * 110.66486 * 96.52497 * 7 6 5 35 35 H 0.97001 * 119.99910 * 359.97438 * 12 10 8 36 36 H 1.09000 * 109.46954 * 298.27618 * 13 12 10 37 37 H 1.08993 * 109.47144 * 58.27974 * 13 12 10 38 38 H 0.97000 * 120.00364 * 185.06853 * 18 17 15 39 39 H 1.09002 * 117.49758 * 359.97438 * 23 14 13 40 40 H 1.08995 * 117.50185 * 145.02650 * 23 14 13 41 41 H 1.09007 * 117.49843 * 214.98204 * 24 14 13 42 42 H 1.08998 * 117.50455 * 359.97438 * 24 14 13 43 43 H 1.09006 * 110.36725 * 322.92646 * 25 5 3 44 44 H 1.08999 * 110.37119 * 85.14515 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3575 1.6671 0.0005 6 6 4.4182 0.6490 0.0075 7 6 5.7689 1.3948 -0.0242 8 6 5.3896 2.7805 -0.6101 9 1 5.3417 2.7447 -1.6984 10 6 6.3522 3.8445 -0.1493 11 8 5.9756 4.7182 0.6029 12 7 7.6314 3.8253 -0.5732 13 6 8.5670 4.8600 -0.1256 14 6 9.9522 4.5838 -0.7138 15 6 10.0533 4.6851 -2.2140 16 1 9.9501 3.7993 -2.8232 17 6 10.2776 5.9085 -2.8088 18 7 10.2771 7.0037 -2.0807 19 14 10.5823 6.0105 -4.6490 20 1 9.2880 6.1829 -5.3563 21 1 11.4642 7.1690 -4.9412 22 1 11.2370 4.7607 -5.1123 23 6 10.8192 3.5336 -0.0166 24 6 11.1677 5.0190 0.1072 25 6 3.9832 3.0018 0.0011 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 4.3467 0.0455 0.9124 32 1 4.3272 0.0129 -0.8729 33 1 6.4795 0.8830 -0.6734 34 1 6.1743 1.4994 0.9821 35 1 7.9326 3.1263 -1.1746 36 1 8.2173 5.8360 -0.4621 37 1 8.6258 4.8504 0.9627 38 1 10.3614 7.8703 -2.5081 39 1 10.4029 3.0397 0.8614 40 1 11.4631 2.9162 -0.6428 41 1 12.0407 5.3781 -0.4378 42 1 10.9806 5.5024 1.0660 43 1 3.4062 3.6916 -0.6149 44 1 4.0656 3.3818 1.0194 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431148800.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:07 Heat of formation + Delta-G solvation = -80.977534 kcal Electronic energy + Delta-G solvation = -23672.556445 eV Core-core repulsion = 20203.151646 eV Total energy + Delta-G solvation = -3469.404799 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.48309 -40.43431 -38.66736 -37.97979 -34.99682 -33.97765 -33.87855 -32.62395 -30.17815 -28.34787 -27.32279 -25.92217 -23.65454 -23.21713 -22.85236 -21.33061 -20.71383 -20.12526 -18.67396 -18.21898 -17.95615 -16.92440 -16.69819 -16.49187 -16.44974 -16.11802 -15.74154 -15.20504 -14.74170 -14.52866 -14.45582 -14.25123 -13.88909 -13.62697 -13.50187 -13.42523 -13.10964 -12.92456 -12.85133 -12.79656 -12.56984 -12.36606 -12.26097 -12.04912 -12.01781 -11.80594 -11.48219 -10.96110 -10.88911 -10.83248 -10.45195 -10.05018 -9.83357 -9.70244 -8.09659 -6.22843 1.42535 1.45793 1.53497 1.60083 1.67233 1.84472 2.41114 2.46765 3.19235 3.27408 3.46133 3.54865 3.78353 3.88891 4.18465 4.22419 4.24804 4.27326 4.30174 4.33558 4.57004 4.60210 4.66621 4.71744 4.74564 4.80906 4.87141 4.96696 5.01798 5.02530 5.06408 5.06839 5.14532 5.24248 5.29333 5.37897 5.58651 5.62340 5.68830 5.78934 6.37119 6.49906 6.75827 6.86098 7.12423 7.37186 7.47399 8.97828 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023217 B = 0.003143 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.732506 B = 8905.512440 C = 9286.485969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.513 3.487 4 O -0.598 6.598 5 N -0.621 5.621 6 C 0.100 3.900 7 C -0.113 4.113 8 C -0.113 4.113 9 H 0.129 0.871 10 C 0.514 3.486 11 O -0.600 6.600 12 N -0.690 5.690 13 C 0.178 3.822 14 C 0.006 3.994 15 C -0.503 4.503 16 H 0.069 0.931 17 C 0.023 3.977 18 N -0.910 5.910 19 Si 0.948 3.052 20 H -0.281 1.281 21 H -0.293 1.293 22 H -0.260 1.260 23 C -0.170 4.170 24 C -0.165 4.165 25 C 0.125 3.875 26 H 0.043 0.957 27 H 0.090 0.910 28 H 0.042 0.958 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.125 0.875 34 H 0.077 0.923 35 H 0.414 0.586 36 H 0.025 0.975 37 H 0.036 0.964 38 H 0.258 0.742 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.104 -20.606 2.305 23.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.305 3.695 4 O -0.479 6.479 5 N -0.355 5.355 6 C -0.021 4.021 7 C -0.151 4.151 8 C -0.135 4.135 9 H 0.147 0.853 10 C 0.300 3.700 11 O -0.482 6.482 12 N -0.339 5.339 13 C 0.054 3.946 14 C 0.005 3.995 15 C -0.541 4.541 16 H 0.087 0.913 17 C -0.178 4.178 18 N -0.548 5.548 19 Si 0.775 3.225 20 H -0.207 1.207 21 H -0.219 1.219 22 H -0.184 1.184 23 C -0.207 4.207 24 C -0.203 4.203 25 C 0.001 3.999 26 H 0.062 0.938 27 H 0.109 0.891 28 H 0.061 0.939 29 H 0.141 0.859 30 H 0.138 0.862 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.144 0.856 34 H 0.095 0.905 35 H 0.250 0.750 36 H 0.043 0.957 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.735 -19.357 2.823 22.314 hybrid contribution 0.459 1.256 -1.055 1.704 sum -10.276 -18.101 1.767 20.889 Atomic orbital electron populations 1.21565 0.93630 1.02797 1.01660 1.21689 0.97868 0.90292 1.06873 1.21483 0.79952 0.93460 0.74624 1.90695 1.55775 1.48888 1.52532 1.48709 1.05916 1.07985 1.72846 1.22385 0.84301 0.90487 1.04926 1.22735 0.98000 0.91382 1.03001 1.22365 0.92374 0.95418 1.03303 0.85341 1.20797 0.83015 0.86006 0.80145 1.90673 1.78247 1.40209 1.39026 1.45774 1.09152 1.30193 1.48773 1.20555 0.89389 0.89607 0.95058 1.19033 0.87314 0.99965 0.93139 1.20705 1.49364 0.93743 0.90249 0.91332 1.25723 0.94633 0.95836 1.01584 1.70107 1.50191 0.97887 1.36615 0.85704 0.77870 0.77790 0.81167 1.20674 1.21941 1.18419 1.23011 1.04567 0.90985 1.02168 1.22440 1.00866 0.97159 0.99865 1.21768 0.91769 0.85703 1.00636 0.93761 0.89098 0.93892 0.85933 0.86228 0.88453 0.87498 0.85627 0.90473 0.75007 0.95657 0.94614 0.93342 0.88998 0.89338 0.91973 0.91383 0.92506 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.20 71.98 0.66 -1.31 16 2 C -0.13 -1.54 5.61 29.85 0.17 -1.38 16 3 C 0.51 12.00 7.85 87.65 0.69 12.69 16 4 O -0.60 -20.50 16.24 -3.04 -0.05 -20.55 16 5 N -0.62 -13.03 3.33 -811.74 -2.70 -15.73 16 6 C 0.10 1.10 6.49 86.73 0.56 1.66 16 7 C -0.11 -1.59 6.41 31.78 0.20 -1.39 16 8 C -0.11 -2.64 3.44 -10.14 -0.03 -2.67 16 9 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 10 C 0.51 17.64 7.15 87.66 0.63 18.27 16 11 O -0.60 -26.59 15.72 -3.05 -0.05 -26.63 16 12 N -0.69 -24.10 5.47 -463.06 -2.54 -26.64 16 13 C 0.18 7.85 5.50 86.38 0.48 8.33 16 14 C 0.01 0.28 1.38 -52.93 -0.07 0.20 16 15 C -0.50 -24.55 8.63 25.60 0.22 -24.33 16 16 H 0.07 3.16 7.82 -2.91 -0.02 3.14 16 17 C 0.02 1.18 5.39 84.65 0.46 1.64 16 18 N -0.91 -51.10 12.91 21.44 0.28 -50.83 16 19 Si 0.95 41.24 29.55 68.60 2.03 43.27 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 21 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 23 C -0.17 -6.26 9.96 30.62 0.30 -5.95 16 24 C -0.17 -7.27 9.42 30.62 0.29 -6.98 16 25 C 0.13 3.49 6.02 86.87 0.52 4.02 16 26 H 0.04 0.78 8.10 -2.39 -0.02 0.76 16 27 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.04 0.76 8.10 -2.39 -0.02 0.74 16 29 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.13 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.08 1.23 8.03 -2.39 -0.02 1.21 16 35 H 0.41 12.20 8.37 -92.71 -0.78 11.42 16 36 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.04 1.56 8.09 -2.39 -0.02 1.54 16 38 H 0.26 14.06 8.32 -92.71 -0.77 13.29 16 39 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 40 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 41 H 0.06 2.98 8.14 -2.38 -0.02 2.96 16 42 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 43 H 0.06 1.84 8.04 -2.38 -0.02 1.82 16 44 H 0.06 1.90 7.41 -2.39 -0.02 1.88 16 Total: -1.00 -74.19 366.95 2.25 -71.94 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.20 Total: 22.36 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 5.07 Total: 2.80 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -4.96 Total: -93.19 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: -0.10 Total: -47.18 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -74.19 2.25 -71.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431148800.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.035 kcal (2) G-P(sol) polarization free energy of solvation -74.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds