Wall clock time and date at job start Tue Mar 31 2020 06:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.41882 * 2 1 4 4 C 1.54478 * 110.37219 * 237.68795 * 2 1 3 5 5 C 1.54682 * 104.07916 * 217.09861 * 4 2 1 6 6 C 1.54479 * 103.98097 * 0.13613 * 5 4 2 7 7 H 1.09000 * 110.37115 * 264.96325 * 6 5 4 8 8 C 1.52997 * 110.37270 * 142.73624 * 6 5 4 9 9 C 1.53001 * 109.46678 * 176.54791 * 8 6 5 10 10 C 1.50707 * 109.46986 * 179.97438 * 9 8 6 11 11 O 1.21282 * 119.99764 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99977 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99734 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47387 * 270.00112 * 13 12 10 15 15 H 1.07997 * 119.99948 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00268 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99947 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99715 * 0.02562 * 16 14 13 19 19 H 1.48490 * 109.47333 * 89.99894 * 18 16 14 20 20 H 1.48504 * 109.46907 * 209.99904 * 18 16 14 21 21 H 1.48500 * 109.47197 * 329.99329 * 18 16 14 22 22 C 1.46499 * 120.00337 * 0.02562 * 12 10 9 23 23 C 1.53000 * 109.46840 * 89.99693 * 22 12 10 24 24 C 1.47201 * 109.46973 * 180.02562 * 23 22 12 25 25 N 7.57718 * 97.63353 * 82.78503 * 2 1 3 26 26 O 1.44428 * 110.37094 * 122.30516 * 2 1 3 27 27 H 1.09001 * 109.46929 * 299.14665 * 1 2 3 28 28 H 1.08998 * 109.47123 * 59.14508 * 1 2 3 29 29 H 1.09001 * 109.46898 * 179.14838 * 1 2 3 30 30 H 1.08999 * 110.50912 * 335.83577 * 4 2 1 31 31 H 1.09003 * 110.51060 * 98.54169 * 4 2 1 32 32 H 1.09001 * 110.61147 * 241.48602 * 5 4 2 33 33 H 1.09000 * 110.48904 * 118.72335 * 5 4 2 34 34 H 1.09002 * 109.46816 * 56.55346 * 8 6 5 35 35 H 1.08992 * 109.47382 * 296.54511 * 8 6 5 36 36 H 1.08999 * 109.47554 * 60.00705 * 9 8 6 37 37 H 1.08997 * 109.47651 * 300.00153 * 9 8 6 38 38 H 1.09006 * 109.47504 * 30.00356 * 13 12 10 39 39 H 1.09003 * 109.47379 * 149.99991 * 13 12 10 40 40 H 0.97003 * 119.99867 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.46813 * 329.99967 * 22 12 10 42 42 H 1.08992 * 109.47397 * 210.00028 * 22 12 10 43 43 H 1.09002 * 109.47398 * 300.00326 * 23 22 12 44 44 H 1.09001 * 109.47194 * 60.00507 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0678 -0.7741 -1.2239 5 6 3.3206 -1.5048 -0.6862 6 6 3.3874 -1.0871 0.7995 7 1 4.0529 -0.2329 0.9240 8 6 3.8601 -2.2593 1.6616 9 6 4.0012 -1.7997 3.1141 10 6 4.4663 -2.9545 3.9635 11 8 4.6657 -4.0382 3.4568 12 7 4.6606 -2.7829 5.2861 13 6 5.1132 -3.9053 6.1116 14 6 3.9172 -4.6544 6.6404 15 1 2.9197 -4.3269 6.3873 16 6 4.0964 -5.7579 7.4474 17 7 3.0527 -6.4112 7.9093 18 14 5.8218 -6.3240 7.8858 19 1 6.2621 -5.6494 9.1332 20 1 5.8228 -7.7947 8.0915 21 1 6.7519 -5.9781 6.7811 22 6 4.4192 -1.4740 5.8983 23 6 2.9633 -1.3881 6.3608 24 6 2.7205 -0.0727 6.9753 25 7 2.5365 0.9432 7.4506 26 8 2.0328 -0.7236 1.1444 27 1 -0.3633 0.5005 0.8976 28 1 -0.3633 0.5270 -0.8822 29 1 -0.3633 -1.0276 -0.0153 30 1 1.3275 -1.4920 -1.5771 31 1 2.3429 -0.0840 -2.0216 32 1 4.2142 -1.1751 -1.2162 33 1 3.1997 -2.5845 -0.7743 34 1 4.8247 -2.6127 1.2970 35 1 3.1319 -3.0684 1.6057 36 1 3.0367 -1.4464 3.4788 37 1 4.7294 -0.9906 3.1702 38 1 5.7248 -4.5766 5.5086 39 1 5.7035 -3.5276 6.9464 40 1 3.1788 -7.1878 8.4767 41 1 4.6152 -0.6895 5.1674 42 1 5.0807 -1.3460 6.7549 43 1 2.3017 -1.5161 5.5040 44 1 2.7673 -2.1727 7.0916 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440382944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:46 Heat of formation + Delta-G solvation = -70.704490 kcal Electronic energy + Delta-G solvation = -23827.468146 eV Core-core repulsion = 20358.508819 eV Total energy + Delta-G solvation = -3468.959327 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.86754 -39.17605 -36.71887 -35.28779 -33.89648 -32.69362 -32.34924 -30.93297 -30.65915 -28.25004 -26.31783 -23.96884 -23.35625 -21.99098 -21.24809 -20.84630 -18.46686 -17.57347 -16.70166 -16.60420 -16.52231 -16.11964 -15.50287 -14.99896 -14.81929 -14.48954 -13.99870 -13.95120 -13.72744 -13.27422 -13.04606 -12.92654 -12.57676 -12.46414 -12.35501 -12.32515 -12.18506 -11.78383 -11.74713 -11.59467 -11.43430 -11.21651 -11.04393 -10.87561 -10.80689 -10.78366 -10.61199 -10.47580 -10.14036 -9.81814 -9.54434 -9.04135 -8.61589 -7.86800 -6.11478 -4.10722 2.88202 2.99932 3.25736 3.32256 3.34503 3.37977 3.66789 3.69522 4.29751 4.37817 4.44208 4.50821 4.73472 4.78808 4.98024 5.01575 5.12528 5.16112 5.21792 5.25942 5.28707 5.35584 5.40311 5.48278 5.56583 5.61147 5.62975 5.71979 5.80854 5.85048 5.92723 5.95710 5.98591 6.19492 6.29879 6.37235 6.61813 6.83512 6.94310 7.25181 7.57672 7.75470 8.14495 8.42484 8.88290 8.93395 9.48998 11.01291 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014839 B = 0.003977 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.511108 B = 7039.295463 C = 8079.371466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.069 3.931 3 H 0.065 0.935 4 C -0.151 4.151 5 C -0.152 4.152 6 C 0.075 3.925 7 H 0.067 0.933 8 C -0.097 4.097 9 C -0.140 4.140 10 C 0.510 3.490 11 O -0.535 6.535 12 N -0.596 5.596 13 C 0.213 3.787 14 C -0.531 4.531 15 H 0.079 0.921 16 C 0.074 3.926 17 N -0.895 5.895 18 Si 0.872 3.128 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.264 1.264 22 C 0.125 3.875 23 C -0.055 4.055 24 C 0.221 3.779 25 N -0.455 5.455 26 O -0.364 6.364 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.026 0.974 40 H 0.265 0.735 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.601 13.341 -15.699 20.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.083 0.917 4 C -0.189 4.189 5 C -0.189 4.189 6 C 0.017 3.983 7 H 0.085 0.915 8 C -0.134 4.134 9 C -0.180 4.180 10 C 0.297 3.703 11 O -0.412 6.412 12 N -0.327 5.327 13 C 0.092 3.908 14 C -0.569 4.569 15 H 0.097 0.903 16 C -0.129 4.129 17 N -0.533 5.533 18 Si 0.699 3.301 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.188 1.188 22 C -0.001 4.001 23 C -0.096 4.096 24 C -0.096 4.096 25 N -0.133 5.133 26 O -0.284 6.284 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.125 0.875 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.282 14.044 -14.938 20.504 hybrid contribution 0.859 -0.739 0.097 1.137 sum 1.141 13.305 -14.841 19.964 Atomic orbital electron populations 1.21802 0.93346 1.03013 1.02279 1.22939 0.95284 0.95280 0.85406 0.91690 1.23035 0.97917 0.99738 0.98236 1.23014 0.98141 1.01931 0.95855 1.23057 0.84612 0.97095 0.93519 0.91501 1.21405 1.02658 0.96592 0.92776 1.21724 1.03186 0.97554 0.95577 1.20455 0.77840 0.89620 0.82349 1.90677 1.50902 1.27233 1.72344 1.47921 1.66220 1.11050 1.07515 1.19735 0.96361 0.84781 0.89873 1.21339 0.93521 1.12086 1.30000 0.90321 1.24847 0.96640 0.95921 0.95458 1.69887 1.29462 1.19721 1.34256 0.86906 0.85508 0.78490 0.79194 1.20155 1.21050 1.18830 1.21263 0.93905 0.85924 0.99041 1.20007 0.99777 0.87248 1.02570 1.29306 0.92852 0.94554 0.92935 1.81194 1.09121 1.12619 1.10380 1.89195 1.27048 1.74308 1.37823 0.91802 0.91452 0.91674 0.90587 0.90904 0.90663 0.90220 0.89957 0.90066 0.88602 0.89664 0.93947 0.95570 0.92544 0.90589 0.89699 0.87450 0.84912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.52 37.16 0.35 -0.85 16 2 C 0.07 0.63 3.92 -25.95 -0.10 0.53 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 4 C -0.15 -1.20 6.64 -25.07 -0.17 -1.37 16 5 C -0.15 -1.33 6.65 -25.07 -0.17 -1.50 16 6 C 0.07 0.78 3.26 -25.96 -0.08 0.70 16 7 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 8 C -0.10 -1.22 4.14 -26.73 -0.11 -1.33 16 9 C -0.14 -1.83 4.18 -27.88 -0.12 -1.95 16 10 C 0.51 9.24 7.67 -10.98 -0.08 9.15 16 11 O -0.53 -12.09 15.56 5.56 0.09 -12.00 16 12 N -0.60 -10.69 2.46 -175.06 -0.43 -11.12 16 13 C 0.21 4.73 4.27 -5.20 -0.02 4.71 16 14 C -0.53 -13.96 9.48 -34.44 -0.33 -14.29 16 15 H 0.08 2.22 7.66 -52.49 -0.40 1.81 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -26.42 13.96 55.43 0.77 -25.65 16 18 Si 0.87 20.63 27.47 -169.99 -4.67 15.96 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 22 C 0.12 1.66 5.21 -4.04 -0.02 1.64 16 23 C -0.05 -0.73 6.03 -29.52 -0.18 -0.91 16 24 C 0.22 3.11 15.44 -20.74 -0.32 2.79 16 25 N -0.46 -7.39 18.54 42.18 0.78 -6.61 16 26 O -0.36 -4.39 10.75 -35.23 -0.38 -4.77 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 30 H 0.08 0.60 7.86 -51.93 -0.41 0.19 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.75 7.87 -51.93 -0.41 0.34 16 34 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 35 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 36 H 0.10 1.21 7.00 -51.93 -0.36 0.84 16 37 H 0.09 0.89 7.40 -51.93 -0.38 0.51 16 38 H 0.04 1.04 6.48 -51.93 -0.34 0.70 16 39 H 0.03 0.54 7.32 -51.93 -0.38 0.16 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.08 0.79 6.44 -51.93 -0.33 0.46 16 42 H 0.08 1.07 7.89 -51.93 -0.41 0.66 16 43 H 0.11 1.33 7.22 -51.93 -0.37 0.95 16 44 H 0.13 2.08 7.26 -51.93 -0.38 1.70 16 LS Contribution 363.25 15.07 5.47 5.47 Total: -1.00 -33.04 363.25 -6.95 -39.99 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -7.15 Total: -0.54 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -1.44 Total: -0.73 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 1.13 Total: -43.38 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.29 Total: -16.77 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.04 -6.95 -39.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440382944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.714 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds