Wall clock time and date at job start Tue Mar 31 2020 06:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.41882 * 2 1 4 4 C 1.54478 * 110.37219 * 237.68795 * 2 1 3 5 5 C 1.54682 * 104.07916 * 217.09861 * 4 2 1 6 6 C 1.54479 * 103.98097 * 0.13613 * 5 4 2 7 7 H 1.09000 * 110.37115 * 264.96325 * 6 5 4 8 8 C 1.52997 * 110.37270 * 142.73624 * 6 5 4 9 9 C 1.53001 * 109.46678 * 176.54791 * 8 6 5 10 10 C 1.50707 * 109.46986 * 179.97438 * 9 8 6 11 11 O 1.21282 * 119.99764 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99977 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99734 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47387 * 270.00112 * 13 12 10 15 15 H 1.07997 * 119.99948 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00268 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99947 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99715 * 0.02562 * 16 14 13 19 19 H 1.48490 * 109.47333 * 89.99894 * 18 16 14 20 20 H 1.48504 * 109.46907 * 209.99904 * 18 16 14 21 21 H 1.48500 * 109.47197 * 329.99329 * 18 16 14 22 22 C 1.46499 * 120.00337 * 0.02562 * 12 10 9 23 23 C 1.53000 * 109.46840 * 89.99693 * 22 12 10 24 24 C 1.47201 * 109.46973 * 180.02562 * 23 22 12 25 25 N 7.57718 * 97.63353 * 82.78503 * 2 1 3 26 26 O 1.44428 * 110.37094 * 122.30516 * 2 1 3 27 27 H 1.09001 * 109.46929 * 299.14665 * 1 2 3 28 28 H 1.08998 * 109.47123 * 59.14508 * 1 2 3 29 29 H 1.09001 * 109.46898 * 179.14838 * 1 2 3 30 30 H 1.08999 * 110.50912 * 335.83577 * 4 2 1 31 31 H 1.09003 * 110.51060 * 98.54169 * 4 2 1 32 32 H 1.09001 * 110.61147 * 241.48602 * 5 4 2 33 33 H 1.09000 * 110.48904 * 118.72335 * 5 4 2 34 34 H 1.09002 * 109.46816 * 56.55346 * 8 6 5 35 35 H 1.08992 * 109.47382 * 296.54511 * 8 6 5 36 36 H 1.08999 * 109.47554 * 60.00705 * 9 8 6 37 37 H 1.08997 * 109.47651 * 300.00153 * 9 8 6 38 38 H 1.09006 * 109.47504 * 30.00356 * 13 12 10 39 39 H 1.09003 * 109.47379 * 149.99991 * 13 12 10 40 40 H 0.97003 * 119.99867 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.46813 * 329.99967 * 22 12 10 42 42 H 1.08992 * 109.47397 * 210.00028 * 22 12 10 43 43 H 1.09002 * 109.47398 * 300.00326 * 23 22 12 44 44 H 1.09001 * 109.47194 * 60.00507 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0678 -0.7741 -1.2239 5 6 3.3206 -1.5048 -0.6862 6 6 3.3874 -1.0871 0.7995 7 1 4.0529 -0.2329 0.9240 8 6 3.8601 -2.2593 1.6616 9 6 4.0012 -1.7997 3.1141 10 6 4.4663 -2.9545 3.9635 11 8 4.6657 -4.0382 3.4568 12 7 4.6606 -2.7829 5.2861 13 6 5.1132 -3.9053 6.1116 14 6 3.9172 -4.6544 6.6404 15 1 2.9197 -4.3269 6.3873 16 6 4.0964 -5.7579 7.4474 17 7 3.0527 -6.4112 7.9093 18 14 5.8218 -6.3240 7.8858 19 1 6.2621 -5.6494 9.1332 20 1 5.8228 -7.7947 8.0915 21 1 6.7519 -5.9781 6.7811 22 6 4.4192 -1.4740 5.8983 23 6 2.9633 -1.3881 6.3608 24 6 2.7205 -0.0727 6.9753 25 7 2.5365 0.9432 7.4506 26 8 2.0328 -0.7236 1.1444 27 1 -0.3633 0.5005 0.8976 28 1 -0.3633 0.5270 -0.8822 29 1 -0.3633 -1.0276 -0.0153 30 1 1.3275 -1.4920 -1.5771 31 1 2.3429 -0.0840 -2.0216 32 1 4.2142 -1.1751 -1.2162 33 1 3.1997 -2.5845 -0.7743 34 1 4.8247 -2.6127 1.2970 35 1 3.1319 -3.0684 1.6057 36 1 3.0367 -1.4464 3.4788 37 1 4.7294 -0.9906 3.1702 38 1 5.7248 -4.5766 5.5086 39 1 5.7035 -3.5276 6.9464 40 1 3.1788 -7.1878 8.4767 41 1 4.6152 -0.6895 5.1674 42 1 5.0807 -1.3460 6.7549 43 1 2.3017 -1.5161 5.5040 44 1 2.7673 -2.1727 7.0916 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440382944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:45 Heat of formation + Delta-G solvation = -91.384671 kcal Electronic energy + Delta-G solvation = -23828.364906 eV Core-core repulsion = 20358.508819 eV Total energy + Delta-G solvation = -3469.856087 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.95074 -40.27979 -37.98557 -36.72244 -35.00332 -34.54539 -33.08332 -32.30247 -31.59416 -29.86157 -27.36840 -25.14440 -24.69265 -23.23617 -22.10362 -21.64226 -19.83616 -19.20814 -18.24682 -17.85262 -17.44998 -16.95851 -16.93633 -16.25032 -15.93867 -15.75532 -15.49446 -14.95756 -14.67521 -14.58451 -14.15715 -14.12304 -14.01506 -13.69557 -13.51707 -13.45395 -13.30294 -13.00833 -12.89049 -12.77956 -12.52111 -12.43339 -12.35308 -12.06309 -11.97244 -11.77973 -11.69103 -11.59661 -11.52512 -11.43857 -10.72123 -10.58209 -10.54525 -9.43983 -8.23922 -6.26788 1.38146 1.42764 1.51894 1.67120 1.83395 1.95543 2.31121 2.38979 2.96670 3.10804 3.13244 3.65461 3.77051 3.89765 4.02982 4.08207 4.10098 4.16745 4.24261 4.37909 4.47275 4.53430 4.59948 4.63931 4.71673 4.76693 4.84005 4.86765 4.93058 5.00720 5.01303 5.08517 5.17444 5.18994 5.24487 5.26082 5.31741 5.39392 5.55952 5.69898 6.10193 6.33829 6.59673 6.72622 6.77419 7.33146 7.50526 8.91956 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014839 B = 0.003977 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.511108 B = 7039.295463 C = 8079.371466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 H 0.080 0.920 4 C -0.148 4.148 5 C -0.153 4.153 6 C 0.077 3.923 7 H 0.090 0.910 8 C -0.094 4.094 9 C -0.128 4.128 10 C 0.503 3.497 11 O -0.589 6.589 12 N -0.598 5.598 13 C 0.219 3.781 14 C -0.526 4.526 15 H 0.046 0.954 16 C 0.013 3.987 17 N -0.945 5.945 18 Si 0.937 3.063 19 H -0.256 1.256 20 H -0.291 1.291 21 H -0.254 1.254 22 C 0.120 3.880 23 C -0.044 4.044 24 C 0.248 3.752 25 N -0.486 5.486 26 O -0.392 6.392 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.021 0.979 39 H 0.051 0.949 40 H 0.265 0.735 41 H 0.118 0.882 42 H 0.098 0.902 43 H 0.119 0.881 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.233 15.924 -16.771 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.004 3.996 3 H 0.098 0.902 4 C -0.185 4.185 5 C -0.191 4.191 6 C 0.020 3.980 7 H 0.108 0.892 8 C -0.132 4.132 9 C -0.168 4.168 10 C 0.293 3.707 11 O -0.470 6.470 12 N -0.328 5.328 13 C 0.097 3.903 14 C -0.565 4.565 15 H 0.064 0.936 16 C -0.185 4.185 17 N -0.586 5.586 18 Si 0.761 3.239 19 H -0.181 1.181 20 H -0.217 1.217 21 H -0.178 1.178 22 C -0.004 4.004 23 C -0.085 4.085 24 C -0.069 4.069 25 N -0.165 5.165 26 O -0.313 6.313 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.123 0.877 37 H 0.143 0.857 38 H 0.039 0.961 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.135 0.865 42 H 0.116 0.884 43 H 0.136 0.864 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.913 16.686 -16.008 23.202 hybrid contribution 0.252 -1.532 0.387 1.600 sum 2.165 15.154 -15.621 21.871 Atomic orbital electron populations 1.21828 0.93109 1.02451 1.03028 1.23161 0.95625 0.95833 0.84997 0.90249 1.23034 0.97288 0.99875 0.98333 1.23034 0.99543 1.01284 0.95209 1.23079 0.84487 0.96702 0.93733 0.89237 1.21351 1.01808 0.96804 0.93232 1.21741 1.04348 0.96174 0.94489 1.21412 0.76514 0.90285 0.82535 1.90651 1.53165 1.29762 1.73389 1.47929 1.65820 1.11629 1.07419 1.19423 0.94476 0.85889 0.90558 1.21630 0.93737 1.12114 1.28970 0.93605 1.25734 1.00703 0.96292 0.95780 1.70043 1.31976 1.20693 1.35902 0.85868 0.80601 0.77624 0.79817 1.18050 1.21682 1.17754 1.21590 0.93712 0.84475 1.00639 1.19854 1.00456 0.86015 1.02176 1.29141 0.91797 0.93988 0.91987 1.81235 1.10255 1.13658 1.11317 1.89164 1.27850 1.74911 1.39365 0.92458 0.89262 0.92936 0.90997 0.88671 0.88642 0.91649 0.90026 0.93334 0.87725 0.85715 0.96137 0.93099 0.92655 0.86452 0.88367 0.86355 0.87445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.52 71.98 0.69 -1.52 16 2 C 0.06 0.99 3.92 31.10 0.12 1.11 16 3 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 4 C -0.15 -2.01 6.64 31.67 0.21 -1.80 16 5 C -0.15 -2.40 6.65 31.67 0.21 -2.19 16 6 C 0.08 1.44 3.26 31.10 0.10 1.54 16 7 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 8 C -0.09 -2.28 4.14 30.59 0.13 -2.16 16 9 C -0.13 -3.05 4.18 29.85 0.12 -2.93 16 10 C 0.50 17.83 7.67 87.66 0.67 18.50 16 11 O -0.59 -27.20 15.56 -3.04 -0.05 -27.25 16 12 N -0.60 -20.64 2.46 -826.15 -2.03 -22.67 16 13 C 0.22 9.57 4.27 85.63 0.37 9.94 16 14 C -0.53 -28.20 9.48 25.60 0.24 -27.96 16 15 H 0.05 2.69 7.66 -2.91 -0.02 2.67 16 16 C 0.01 0.71 5.47 84.66 0.46 1.18 16 17 N -0.95 -57.58 13.96 21.45 0.30 -57.28 16 18 Si 0.94 42.63 27.47 68.60 1.88 44.51 16 19 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 20 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 22 C 0.12 2.85 5.21 86.38 0.45 3.30 16 23 C -0.04 -1.10 6.03 28.79 0.17 -0.92 16 24 C 0.25 6.49 15.44 89.44 1.38 7.87 16 25 N -0.49 -14.94 18.54 20.01 0.37 -14.56 16 26 O -0.39 -8.81 10.75 -148.98 -1.60 -10.41 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 0.90 8.12 -2.39 -0.02 0.88 16 30 H 0.07 1.03 7.86 -2.39 -0.02 1.01 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 1.20 7.87 -2.39 -0.02 1.18 16 34 H 0.08 1.97 8.10 -2.39 -0.02 1.95 16 35 H 0.05 1.48 8.10 -2.39 -0.02 1.46 16 36 H 0.10 2.37 7.00 -2.39 -0.02 2.35 16 37 H 0.12 2.02 7.40 -2.39 -0.02 2.01 16 38 H 0.02 1.00 6.48 -2.38 -0.02 0.99 16 39 H 0.05 2.00 7.32 -2.39 -0.02 1.98 16 40 H 0.26 15.20 8.31 -92.71 -0.77 14.42 16 41 H 0.12 1.88 6.44 -2.39 -0.02 1.87 16 42 H 0.10 2.13 7.89 -2.39 -0.02 2.11 16 43 H 0.12 2.75 7.22 -2.39 -0.02 2.73 16 44 H 0.11 3.37 7.26 -2.39 -0.02 3.36 16 Total: -1.00 -74.98 363.25 5.13 -69.85 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.92 Total: 13.85 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 5.33 Total: 3.96 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -1.36 Total: -94.52 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -1.65 Total: -37.65 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.88 Total: 44.51 kcal Total: -74.98 5.13 -69.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440382944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.535 kcal (2) G-P(sol) polarization free energy of solvation -74.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds