Wall clock time and date at job start Tue Mar 31 2020 06:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.27274 * 2 1 4 4 C 1.54947 * 110.30874 * 122.19316 * 2 1 3 5 5 C 1.55307 * 100.94272 * 155.36267 * 4 2 1 6 6 C 1.54390 * 102.25162 * 325.86753 * 5 4 2 7 7 H 1.09000 * 109.82918 * 261.84296 * 6 5 4 8 8 C 1.52994 * 109.83034 * 140.86954 * 6 5 4 9 9 C 1.52996 * 109.47056 * 175.41436 * 8 6 5 10 10 C 1.50704 * 109.47185 * 179.97438 * 9 8 6 11 11 O 1.21284 * 119.99881 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00045 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99679 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.46739 * 90.00458 * 13 12 10 15 15 H 1.08000 * 120.00229 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99658 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99859 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00232 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46839 * 89.99444 * 18 16 14 20 20 H 1.48497 * 109.47035 * 209.99776 * 18 16 14 21 21 H 1.48495 * 109.46840 * 329.99548 * 18 16 14 22 22 C 1.46495 * 119.99922 * 0.02562 * 12 10 9 23 23 C 1.53003 * 109.47018 * 89.99942 * 22 12 10 24 24 C 1.47193 * 109.47450 * 180.02562 * 23 22 12 25 25 N 7.73494 * 87.98252 * 255.96640 * 2 1 3 26 26 O 1.43244 * 107.58641 * 21.35598 * 6 5 4 27 27 H 1.09002 * 109.47153 * 180.63696 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.63886 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.63868 * 1 2 3 30 30 H 1.09000 * 111.12910 * 273.27566 * 4 2 1 31 31 H 1.09002 * 111.12472 * 37.44413 * 4 2 1 32 32 H 1.09003 * 110.84897 * 207.68146 * 5 4 2 33 33 H 1.09002 * 111.02648 * 84.13662 * 5 4 2 34 34 H 1.08998 * 109.47286 * 295.41560 * 8 6 5 35 35 H 1.09003 * 109.47375 * 55.41067 * 8 6 5 36 36 H 1.09000 * 109.47358 * 299.99693 * 9 8 6 37 37 H 1.08998 * 109.47528 * 60.00307 * 9 8 6 38 38 H 1.08999 * 109.47085 * 209.99896 * 13 12 10 39 39 H 1.08990 * 109.47522 * 330.00434 * 13 12 10 40 40 H 0.96997 * 120.00062 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.47509 * 209.99326 * 22 12 10 42 42 H 1.09001 * 109.47301 * 329.99923 * 22 12 10 43 43 H 1.09003 * 109.47301 * 300.00190 * 23 22 12 44 44 H 1.09001 * 109.47100 * 59.99857 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7742 1.2297 5 6 3.4699 -1.2031 0.7180 6 6 3.2113 -1.4412 -0.7854 7 1 3.0625 -2.5049 -0.9711 8 6 4.3991 -0.9310 -1.6036 9 6 4.1863 -1.2732 -3.0795 10 6 5.3561 -0.7701 -3.8856 11 8 6.2702 -0.1949 -3.3337 12 7 5.3869 -0.9602 -5.2196 13 6 6.5238 -0.4706 -6.0031 14 6 7.5800 -1.5428 -6.0797 15 1 7.4202 -2.4940 -5.5937 16 6 8.7499 -1.3099 -6.7711 17 7 9.6719 -2.2454 -6.8375 18 14 9.0260 0.3350 -7.6123 19 1 9.6900 1.2688 -6.6676 20 1 9.8883 0.1420 -8.8058 21 1 7.7193 0.9017 -8.0322 22 6 4.2830 -1.6555 -5.8860 23 6 3.2232 -0.6380 -6.3131 24 6 2.1137 -1.3366 -6.9822 25 7 1.2577 -1.8745 -7.4994 26 8 2.0286 -0.7157 -1.1413 27 1 -0.3633 -1.0276 0.0114 28 1 -0.3633 0.5039 -0.8957 29 1 -0.3634 0.5237 0.8842 30 1 2.1497 -0.1223 2.0994 31 1 1.4470 -1.6429 1.4493 32 1 3.7966 -2.1217 1.2055 33 1 4.2001 -0.4073 0.8646 34 1 4.4815 0.1499 -1.4894 35 1 5.3147 -1.4045 -1.2491 36 1 4.1041 -2.3541 -3.1937 37 1 3.2709 -0.7996 -3.4340 38 1 6.1895 -0.2175 -7.0092 39 1 6.9400 0.4158 -5.5247 40 1 10.4948 -2.0816 -7.3242 41 1 4.6604 -2.1777 -6.7652 42 1 3.8392 -2.3755 -5.1984 43 1 2.8457 -0.1157 -5.4340 44 1 3.6670 0.0820 -7.0007 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440382947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:51 Heat of formation + Delta-G solvation = -71.087878 kcal Electronic energy + Delta-G solvation = -23740.591017 eV Core-core repulsion = 20271.615065 eV Total energy + Delta-G solvation = -3468.975952 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.94237 -39.17987 -36.86809 -35.32250 -33.87451 -32.74854 -32.41457 -31.01100 -30.72165 -28.20825 -26.30645 -24.04069 -23.48049 -21.84686 -21.69341 -20.42968 -18.38453 -17.67309 -17.17299 -16.81778 -16.58334 -15.99711 -15.48033 -14.98777 -14.63455 -14.43649 -14.15006 -13.91239 -13.74079 -13.44281 -13.19169 -12.95873 -12.65144 -12.45966 -12.43595 -12.36006 -12.22498 -11.89364 -11.82799 -11.66163 -11.50945 -11.18204 -11.06549 -10.99997 -10.88335 -10.84368 -10.62569 -10.52219 -10.19348 -9.58307 -9.57311 -9.03074 -8.60929 -7.85570 -6.10531 -4.09725 2.74175 2.82974 3.27695 3.31476 3.33354 3.35419 3.57827 3.64827 4.18283 4.31209 4.37558 4.52189 4.61129 4.91432 4.96613 5.00127 5.06682 5.11514 5.13541 5.22249 5.27027 5.33181 5.35892 5.46436 5.51679 5.54569 5.58803 5.70513 5.77175 5.80562 5.87861 5.89237 5.95301 6.10478 6.24347 6.37138 6.64023 6.90608 6.98511 7.25435 7.57697 7.59284 8.15354 8.44186 8.89601 8.95204 9.49416 11.02832 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014809 B = 0.003936 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.351117 B = 7112.885098 C = 8454.473264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 H 0.069 0.931 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.080 3.920 7 H 0.080 0.920 8 C -0.112 4.112 9 C -0.138 4.138 10 C 0.509 3.491 11 O -0.536 6.536 12 N -0.594 5.594 13 C 0.214 3.786 14 C -0.530 4.530 15 H 0.075 0.925 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.876 3.124 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.265 1.265 22 C 0.119 3.881 23 C -0.051 4.051 24 C 0.218 3.782 25 N -0.445 5.445 26 O -0.373 6.373 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.031 0.969 39 H 0.039 0.961 40 H 0.265 0.735 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.109 0.891 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.795 4.134 13.081 21.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.017 3.983 3 H 0.087 0.913 4 C -0.190 4.190 5 C -0.190 4.190 6 C 0.023 3.977 7 H 0.098 0.902 8 C -0.150 4.150 9 C -0.178 4.178 10 C 0.296 3.704 11 O -0.413 6.413 12 N -0.326 5.326 13 C 0.093 3.907 14 C -0.568 4.568 15 H 0.093 0.907 16 C -0.130 4.130 17 N -0.535 5.535 18 Si 0.703 3.297 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.190 1.190 22 C -0.008 4.008 23 C -0.093 4.093 24 C -0.100 4.100 25 N -0.122 5.122 26 O -0.293 6.293 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.113 0.887 42 H 0.098 0.902 43 H 0.127 0.873 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -17.465 3.605 12.311 21.670 hybrid contribution 0.786 0.908 -0.185 1.215 sum -16.679 4.514 12.126 21.109 Atomic orbital electron populations 1.21884 0.93985 1.02662 1.02271 1.22929 0.94594 0.95707 0.85085 0.91338 1.23312 0.96463 1.00776 0.98442 1.23174 0.97566 1.02927 0.95318 1.22813 0.85438 0.96063 0.93412 0.90234 1.21718 0.97081 1.02698 0.93466 1.21689 0.97967 1.02505 0.95660 1.20519 0.87722 0.79821 0.82299 1.90673 1.38368 1.42363 1.69887 1.47895 1.20802 1.57030 1.06846 1.19701 0.84336 0.96311 0.90307 1.21325 1.00581 1.01104 1.33836 0.90696 1.24865 0.95601 0.96630 0.95921 1.69893 1.07882 1.33441 1.42315 0.86862 0.78790 0.84643 0.79454 1.19930 1.21142 1.18974 1.21310 0.86603 0.93064 0.99796 1.19900 0.89803 0.98691 1.00877 1.29044 0.94049 0.93648 0.93307 1.81190 1.11580 1.09421 1.09996 1.88442 1.42208 1.64767 1.33912 0.92040 0.91869 0.91507 0.90181 0.90452 0.90051 0.90101 0.90791 0.90097 0.89410 0.88901 0.95112 0.94349 0.92548 0.88723 0.90177 0.87323 0.86823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.62 37.16 0.36 -0.76 16 2 C 0.07 0.66 4.07 -25.70 -0.10 0.55 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.15 -1.12 6.57 -24.48 -0.16 -1.28 16 5 C -0.15 -1.29 6.55 -24.78 -0.16 -1.45 16 6 C 0.08 0.83 3.52 -26.01 -0.09 0.74 16 7 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 8 C -0.11 -1.41 4.07 -26.74 -0.11 -1.51 16 9 C -0.14 -1.82 4.16 -27.88 -0.12 -1.94 16 10 C 0.51 9.30 7.67 -10.98 -0.08 9.21 16 11 O -0.54 -12.20 15.56 5.55 0.09 -12.11 16 12 N -0.59 -10.78 2.46 -175.06 -0.43 -11.21 16 13 C 0.21 4.80 4.23 -5.19 -0.02 4.78 16 14 C -0.53 -14.53 9.94 -34.44 -0.34 -14.87 16 15 H 0.07 2.26 8.06 -52.49 -0.42 1.84 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 18 Si 0.88 20.85 27.47 -169.99 -4.67 16.18 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -5.83 6.54 56.52 0.37 -5.46 16 22 C 0.12 1.59 5.17 -4.04 -0.02 1.57 16 23 C -0.05 -0.54 6.03 -29.52 -0.18 -0.72 16 24 C 0.22 2.67 15.43 -20.77 -0.32 2.35 16 25 N -0.44 -6.64 18.54 42.14 0.78 -5.86 16 26 O -0.37 -4.21 10.32 -35.23 -0.36 -4.57 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.53 8.06 -51.93 -0.42 0.11 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.70 7.85 -51.93 -0.41 0.29 16 34 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 35 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 36 H 0.09 1.04 7.40 -51.93 -0.38 0.66 16 37 H 0.09 1.07 6.93 -51.93 -0.36 0.71 16 38 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 39 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.09 1.36 8.07 -51.93 -0.42 0.95 16 42 H 0.08 0.92 6.44 -51.93 -0.33 0.59 16 43 H 0.11 0.96 7.22 -51.93 -0.38 0.58 16 44 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 365.20 15.07 5.50 5.50 Total: -1.00 -34.21 365.20 -7.01 -41.22 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -7.24 Total: -1.45 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -1.45 Total: -1.37 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 1.12 Total: -43.40 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.28 Total: -16.68 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.67 Total: 16.18 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.21 -7.01 -41.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440382947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.866 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds