Wall clock time and date at job start Tue Mar 31 2020 06:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.27274 * 2 1 4 4 C 1.54947 * 110.30874 * 122.19316 * 2 1 3 5 5 C 1.55307 * 100.94272 * 155.36267 * 4 2 1 6 6 C 1.54390 * 102.25162 * 325.86753 * 5 4 2 7 7 H 1.09000 * 109.82918 * 261.84296 * 6 5 4 8 8 C 1.52994 * 109.83034 * 140.86954 * 6 5 4 9 9 C 1.52996 * 109.47056 * 175.41436 * 8 6 5 10 10 C 1.50704 * 109.47185 * 179.97438 * 9 8 6 11 11 O 1.21284 * 119.99881 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00045 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99679 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.46739 * 90.00458 * 13 12 10 15 15 H 1.08000 * 120.00229 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99658 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99859 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00232 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46839 * 89.99444 * 18 16 14 20 20 H 1.48497 * 109.47035 * 209.99776 * 18 16 14 21 21 H 1.48495 * 109.46840 * 329.99548 * 18 16 14 22 22 C 1.46495 * 119.99922 * 0.02562 * 12 10 9 23 23 C 1.53003 * 109.47018 * 89.99942 * 22 12 10 24 24 C 1.47193 * 109.47450 * 180.02562 * 23 22 12 25 25 N 7.73494 * 87.98252 * 255.96640 * 2 1 3 26 26 O 1.43244 * 107.58641 * 21.35598 * 6 5 4 27 27 H 1.09002 * 109.47153 * 180.63696 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.63886 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.63868 * 1 2 3 30 30 H 1.09000 * 111.12910 * 273.27566 * 4 2 1 31 31 H 1.09002 * 111.12472 * 37.44413 * 4 2 1 32 32 H 1.09003 * 110.84897 * 207.68146 * 5 4 2 33 33 H 1.09002 * 111.02648 * 84.13662 * 5 4 2 34 34 H 1.08998 * 109.47286 * 295.41560 * 8 6 5 35 35 H 1.09003 * 109.47375 * 55.41067 * 8 6 5 36 36 H 1.09000 * 109.47358 * 299.99693 * 9 8 6 37 37 H 1.08998 * 109.47528 * 60.00307 * 9 8 6 38 38 H 1.08999 * 109.47085 * 209.99896 * 13 12 10 39 39 H 1.08990 * 109.47522 * 330.00434 * 13 12 10 40 40 H 0.96997 * 120.00062 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.47509 * 209.99326 * 22 12 10 42 42 H 1.09001 * 109.47301 * 329.99923 * 22 12 10 43 43 H 1.09003 * 109.47301 * 300.00190 * 23 22 12 44 44 H 1.09001 * 109.47100 * 59.99857 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7742 1.2297 5 6 3.4699 -1.2031 0.7180 6 6 3.2113 -1.4412 -0.7854 7 1 3.0625 -2.5049 -0.9711 8 6 4.3991 -0.9310 -1.6036 9 6 4.1863 -1.2732 -3.0795 10 6 5.3561 -0.7701 -3.8856 11 8 6.2702 -0.1949 -3.3337 12 7 5.3869 -0.9602 -5.2196 13 6 6.5238 -0.4706 -6.0031 14 6 7.5800 -1.5428 -6.0797 15 1 7.4202 -2.4940 -5.5937 16 6 8.7499 -1.3099 -6.7711 17 7 9.6719 -2.2454 -6.8375 18 14 9.0260 0.3350 -7.6123 19 1 9.6900 1.2688 -6.6676 20 1 9.8883 0.1420 -8.8058 21 1 7.7193 0.9017 -8.0322 22 6 4.2830 -1.6555 -5.8860 23 6 3.2232 -0.6380 -6.3131 24 6 2.1137 -1.3366 -6.9822 25 7 1.2577 -1.8745 -7.4994 26 8 2.0286 -0.7157 -1.1413 27 1 -0.3633 -1.0276 0.0114 28 1 -0.3633 0.5039 -0.8957 29 1 -0.3634 0.5237 0.8842 30 1 2.1497 -0.1223 2.0994 31 1 1.4470 -1.6429 1.4493 32 1 3.7966 -2.1217 1.2055 33 1 4.2001 -0.4073 0.8646 34 1 4.4815 0.1499 -1.4894 35 1 5.3147 -1.4045 -1.2491 36 1 4.1041 -2.3541 -3.1937 37 1 3.2709 -0.7996 -3.4340 38 1 6.1895 -0.2175 -7.0092 39 1 6.9400 0.4158 -5.5247 40 1 10.4948 -2.0816 -7.3242 41 1 4.6604 -2.1777 -6.7652 42 1 3.8392 -2.3755 -5.1984 43 1 2.8457 -0.1157 -5.4340 44 1 3.6670 0.0820 -7.0007 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440382947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:50 Heat of formation + Delta-G solvation = -92.906290 kcal Electronic energy + Delta-G solvation = -23741.537134 eV Core-core repulsion = 20271.615065 eV Total energy + Delta-G solvation = -3469.922069 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.98356 -40.31717 -37.99689 -36.72798 -35.01933 -34.57165 -33.11650 -32.35639 -31.60117 -29.80968 -27.33742 -25.21790 -24.77771 -23.20552 -22.38670 -21.26324 -19.76701 -19.15809 -18.45850 -17.99763 -17.76946 -17.12756 -16.72414 -16.22121 -15.91220 -15.69626 -15.21693 -14.89692 -14.72346 -14.61381 -14.40036 -14.17010 -13.81077 -13.73349 -13.53672 -13.44085 -13.20836 -13.11323 -12.93968 -12.72219 -12.55113 -12.50942 -12.37971 -12.09114 -11.95937 -11.79747 -11.68445 -11.65303 -11.62799 -11.53871 -10.77090 -10.56295 -10.35341 -9.43326 -8.27932 -6.32412 1.38491 1.42438 1.50084 1.70053 1.86239 1.90406 2.31804 2.36661 2.90351 3.06772 3.16070 3.64922 3.71475 3.90132 3.96477 4.05617 4.12107 4.20192 4.25222 4.33937 4.44204 4.55489 4.59094 4.67201 4.78158 4.81709 4.82464 4.86225 4.89430 4.96235 5.03553 5.05976 5.12978 5.13275 5.20581 5.31935 5.37661 5.42363 5.53405 5.66761 6.24212 6.30054 6.62016 6.70221 6.73246 7.28249 7.48961 8.89059 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014809 B = 0.003936 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.351117 B = 7112.885098 C = 8454.473264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.064 3.936 3 H 0.065 0.935 4 C -0.145 4.145 5 C -0.154 4.154 6 C 0.084 3.916 7 H 0.089 0.911 8 C -0.108 4.108 9 C -0.126 4.126 10 C 0.502 3.498 11 O -0.590 6.590 12 N -0.597 5.597 13 C 0.221 3.779 14 C -0.533 4.533 15 H 0.029 0.971 16 C 0.008 3.992 17 N -0.950 5.950 18 Si 0.945 3.055 19 H -0.278 1.278 20 H -0.282 1.282 21 H -0.228 1.228 22 C 0.113 3.887 23 C -0.037 4.037 24 C 0.245 3.755 25 N -0.490 5.490 26 O -0.390 6.390 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.059 0.941 39 H 0.023 0.977 40 H 0.266 0.734 41 H 0.083 0.917 42 H 0.102 0.898 43 H 0.135 0.865 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.166 5.451 13.375 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.007 3.993 3 H 0.083 0.917 4 C -0.182 4.182 5 C -0.191 4.191 6 C 0.026 3.974 7 H 0.107 0.893 8 C -0.146 4.146 9 C -0.165 4.165 10 C 0.292 3.708 11 O -0.470 6.470 12 N -0.327 5.327 13 C 0.099 3.901 14 C -0.572 4.572 15 H 0.047 0.953 16 C -0.190 4.190 17 N -0.590 5.590 18 Si 0.768 3.232 19 H -0.204 1.204 20 H -0.208 1.208 21 H -0.151 1.151 22 C -0.011 4.011 23 C -0.078 4.078 24 C -0.072 4.072 25 N -0.168 5.168 26 O -0.310 6.310 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.124 0.876 37 H 0.137 0.863 38 H 0.076 0.924 39 H 0.042 0.958 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.120 0.880 43 H 0.153 0.847 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -19.906 4.908 12.597 24.063 hybrid contribution 1.545 0.419 -0.206 1.614 sum -18.361 5.327 12.391 22.782 Atomic orbital electron populations 1.21873 0.92860 1.02818 1.02876 1.23129 0.95516 0.95554 0.85102 0.91671 1.23302 0.95464 1.01149 0.98283 1.23187 0.98296 1.03391 0.94235 1.22765 0.84337 0.96214 0.94080 0.89332 1.21669 0.97735 1.01662 0.93574 1.21704 0.96332 1.03488 0.95020 1.21441 0.88365 0.78704 0.82320 1.90645 1.40710 1.44789 1.70876 1.47889 1.20767 1.57077 1.06985 1.19396 0.84685 0.93984 0.92057 1.21633 1.02261 1.00680 1.32626 0.95259 1.25867 0.95256 1.00878 0.96953 1.70061 1.08744 1.36175 1.44024 0.85757 0.80297 0.79189 0.77988 1.20387 1.20815 1.15093 1.21509 0.85976 0.93964 0.99681 1.19843 0.88223 0.97682 1.02084 1.29150 0.93418 0.92503 0.92113 1.81235 1.13231 1.10708 1.11637 1.88410 1.42219 1.65054 1.35360 0.92093 0.92495 0.89689 0.88661 0.89612 0.88865 0.90740 0.92304 0.91715 0.87603 0.86316 0.92361 0.95847 0.92509 0.89833 0.87990 0.84703 0.85408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.62 71.98 0.69 -1.15 16 2 C 0.06 1.00 4.07 31.26 0.13 1.13 16 3 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 4 C -0.14 -1.78 6.57 32.05 0.21 -1.57 16 5 C -0.15 -2.34 6.55 31.86 0.21 -2.13 16 6 C 0.08 1.59 3.52 31.06 0.11 1.69 16 7 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 8 C -0.11 -2.65 4.07 30.59 0.12 -2.53 16 9 C -0.13 -3.10 4.16 29.85 0.12 -2.97 16 10 C 0.50 18.06 7.67 87.66 0.67 18.73 16 11 O -0.59 -27.38 15.56 -3.04 -0.05 -27.42 16 12 N -0.60 -20.95 2.46 -826.16 -2.03 -22.98 16 13 C 0.22 9.73 4.23 85.63 0.36 10.09 16 14 C -0.53 -29.89 9.94 25.60 0.25 -29.64 16 15 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 16 C 0.01 0.45 5.47 84.66 0.46 0.92 16 17 N -0.95 -59.24 13.96 21.45 0.30 -58.94 16 18 Si 0.94 42.73 27.47 68.60 1.88 44.62 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.23 -8.89 6.54 99.48 0.65 -8.24 16 22 C 0.11 2.78 5.17 86.38 0.45 3.23 16 23 C -0.04 -0.65 6.03 28.79 0.17 -0.48 16 24 C 0.25 5.34 15.43 89.44 1.38 6.72 16 25 N -0.49 -13.71 18.54 20.00 0.37 -13.34 16 26 O -0.39 -7.96 10.32 -148.98 -1.54 -9.50 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 0.93 8.06 -2.39 -0.02 0.91 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.23 7.85 -2.39 -0.02 1.21 16 34 H 0.06 1.61 8.10 -2.39 -0.02 1.59 16 35 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 36 H 0.11 2.26 7.40 -2.39 -0.02 2.24 16 37 H 0.12 2.33 6.93 -2.39 -0.02 2.32 16 38 H 0.06 2.26 7.13 -2.39 -0.02 2.25 16 39 H 0.02 1.12 6.85 -2.39 -0.02 1.10 16 40 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 41 H 0.08 2.28 8.07 -2.39 -0.02 2.26 16 42 H 0.10 2.07 6.44 -2.39 -0.02 2.05 16 43 H 0.14 1.76 7.22 -2.39 -0.02 1.74 16 44 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -78.05 365.20 5.21 -72.84 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.92 Total: 12.68 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 5.35 Total: 2.05 kcal Atomic # 7 Polarization: -93.90 SS G_CDS: -1.36 Total: -95.26 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -1.58 Total: -36.92 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.88 Total: 44.62 kcal Total: -78.05 5.21 -72.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440382947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.068 kcal (2) G-P(sol) polarization free energy of solvation -78.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds