Wall clock time and date at job start Tue Mar 31 2020 07:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46505 * 109.46806 * 2 1 4 4 C 1.36462 * 124.84723 * 90.02340 * 3 2 1 5 5 C 1.50689 * 125.56564 * 359.94177 * 4 3 2 6 6 C 1.34480 * 108.86973 * 179.97438 * 4 3 2 7 7 C 1.46709 * 106.34317 * 0.02562 * 6 4 3 8 8 C 1.47178 * 126.94654 * 179.97438 * 7 6 4 9 9 O 1.21658 * 119.99858 * 172.68264 * 8 7 6 10 10 N 1.34775 * 120.00187 * 352.68319 * 8 7 6 11 11 C 1.36974 * 120.00071 * 3.62471 * 10 8 7 12 12 H 1.08004 * 119.99877 * 305.73059 * 11 10 8 13 13 C 1.38973 * 120.00159 * 125.73179 * 11 10 8 14 14 N 1.31419 * 119.99581 * 4.53184 * 13 11 10 15 15 Si 1.86793 * 119.99995 * 184.52860 * 13 11 10 16 16 H 1.48504 * 109.47126 * 60.00551 * 15 13 11 17 17 H 1.48500 * 109.46944 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47440 * 299.99901 * 15 13 11 19 19 C 1.46505 * 120.00049 * 183.63109 * 10 8 7 20 20 C 1.52992 * 109.47280 * 84.76499 * 19 10 8 21 21 O 1.42892 * 109.47452 * 65.00260 * 20 19 10 22 22 C 1.42903 * 114.00483 * 180.02562 * 21 20 19 23 23 C 1.34687 * 124.85309 * 270.29787 * 3 2 1 24 24 C 1.50707 * 125.80800 * 0.03825 * 23 3 2 25 25 H 1.08990 * 109.47246 * 299.99498 * 1 2 3 26 26 H 1.08999 * 109.47245 * 60.00540 * 1 2 3 27 27 H 1.09010 * 109.46692 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47069 * 240.00553 * 2 1 3 29 29 H 1.08993 * 109.47344 * 119.99915 * 2 1 3 30 30 H 1.09002 * 109.47610 * 270.00154 * 5 4 3 31 31 H 1.09002 * 109.47264 * 29.99983 * 5 4 3 32 32 H 1.09004 * 109.47109 * 150.00058 * 5 4 3 33 33 H 1.08000 * 126.83032 * 179.97438 * 6 4 3 34 34 H 0.97003 * 119.99563 * 179.97438 * 14 13 11 35 35 H 1.09001 * 109.46811 * 204.77024 * 19 10 8 36 36 H 1.09004 * 109.46823 * 324.75941 * 19 10 8 37 37 H 1.09010 * 109.46902 * 185.00320 * 20 19 10 38 38 H 1.08998 * 109.47415 * 304.99818 * 20 19 10 39 39 H 1.09003 * 109.47202 * 59.99169 * 22 21 20 40 40 H 1.08998 * 109.47382 * 180.02562 * 22 21 20 41 41 H 1.08999 * 109.46794 * 300.00155 * 22 21 20 42 42 H 1.08990 * 109.47253 * 270.21769 * 24 23 3 43 43 H 1.09001 * 109.46994 * 30.22211 * 24 23 3 44 44 H 1.09001 * 109.46786 * 150.21840 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2786 2.1163 1.1199 5 6 2.1096 1.6402 2.5396 6 6 2.7099 3.3351 0.7497 7 6 2.7122 3.3442 -0.7173 8 6 3.1057 4.4586 -1.5944 9 8 3.1868 4.2875 -2.7962 10 7 3.3762 5.6688 -1.0664 11 6 3.3574 5.8429 0.2921 12 1 2.4820 5.5646 0.8602 13 6 4.4647 6.3778 0.9395 14 7 5.4947 6.7989 0.2403 15 14 4.4890 6.4981 2.8034 16 1 4.3524 5.1402 3.3890 17 1 5.7728 7.1007 3.2438 18 1 3.3611 7.3496 3.2593 19 6 3.6902 6.7980 -1.9453 20 6 2.3908 7.4522 -2.4190 21 8 1.7091 8.0224 -1.3002 22 6 0.4757 8.6618 -1.6351 23 6 2.2694 2.1089 -1.1053 24 6 2.0954 1.6411 -2.5273 25 1 -0.3633 0.5137 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.1003 1.8687 2.8818 31 1 2.2731 0.5634 2.5837 32 1 2.8333 2.1441 3.1804 33 1 2.9967 4.1462 1.4026 34 1 6.2674 7.1726 0.6922 35 1 4.2868 7.5286 -1.3991 36 1 4.2530 6.4413 -2.8080 37 1 2.6208 8.2351 -3.1419 38 1 1.7553 6.7007 -2.8873 39 1 -0.1994 7.9350 -2.0869 40 1 0.0206 9.0689 -0.7322 41 1 0.6655 9.4696 -2.3418 42 1 3.0208 1.1819 -2.8745 43 1 1.2876 0.9106 -2.5731 44 1 1.8516 2.4926 -3.1626 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457185430.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:57 Heat of formation + Delta-G solvation = -45.155698 kcal Electronic energy + Delta-G solvation = -25130.864684 eV Core-core repulsion = 21663.013236 eV Total energy + Delta-G solvation = -3467.851448 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.19691 -40.06363 -38.46105 -36.49210 -34.81904 -33.49675 -33.31522 -31.31096 -30.00178 -29.52704 -27.28075 -26.84824 -25.41820 -24.54368 -23.42102 -21.96282 -20.81017 -19.83707 -18.01317 -17.65973 -17.24283 -17.03767 -16.58812 -16.20624 -16.05700 -15.92977 -15.62643 -15.14002 -14.89831 -14.29370 -14.17493 -14.00894 -13.88809 -13.64649 -13.54757 -13.31942 -13.24020 -13.07526 -12.91673 -12.86853 -12.67647 -12.52658 -12.32877 -12.17132 -12.09396 -12.04149 -11.91519 -11.73228 -10.72987 -10.53220 -10.26366 -9.28062 -9.07648 -8.63202 -8.11070 -5.99025 1.07692 1.46998 1.51192 1.56756 1.74845 2.09411 2.40225 2.93246 3.00627 3.20703 3.32569 3.90515 3.96167 4.15302 4.19742 4.26559 4.35064 4.37147 4.44674 4.53718 4.56200 4.58978 4.65406 4.73146 4.75567 4.78203 4.80672 4.85164 4.87717 5.02809 5.09976 5.14225 5.18759 5.30142 5.40498 5.43647 5.57470 5.68158 6.18997 6.29953 6.41334 6.46035 6.58647 6.68703 7.27998 7.78805 8.21037 8.92721 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012911 B = 0.006578 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.155695 B = 4255.467868 C = 5363.949791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.088 3.912 3 N -0.433 5.433 4 C -0.011 4.011 5 C -0.071 4.071 6 C -0.176 4.176 7 C -0.240 4.240 8 C 0.537 3.463 9 O -0.640 6.640 10 N -0.444 5.444 11 C -0.308 4.308 12 H 0.085 0.915 13 C 0.000 4.000 14 N -0.911 5.911 15 Si 0.969 3.031 16 H -0.254 1.254 17 H -0.286 1.286 18 H -0.267 1.267 19 C 0.120 3.880 20 C 0.066 3.934 21 O -0.398 6.398 22 C 0.026 3.974 23 C 0.071 3.929 24 C -0.071 4.071 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.149 0.851 34 H 0.265 0.735 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.027 0.973 39 H 0.036 0.964 40 H 0.094 0.906 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.233 -10.786 3.006 15.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.032 4.032 3 N -0.111 5.111 4 C -0.119 4.119 5 C -0.129 4.129 6 C -0.200 4.200 7 C -0.249 4.249 8 C 0.330 3.670 9 O -0.531 6.531 10 N -0.161 5.161 11 C -0.437 4.437 12 H 0.103 0.897 13 C -0.200 4.200 14 N -0.550 5.550 15 Si 0.792 3.208 16 H -0.178 1.178 17 H -0.212 1.212 18 H -0.192 1.192 19 C -0.004 4.004 20 C -0.011 4.011 21 O -0.317 6.317 22 C -0.071 4.071 23 C -0.046 4.046 24 C -0.129 4.129 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.128 0.872 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.166 0.834 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.046 0.954 39 H 0.055 0.945 40 H 0.113 0.887 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.046 -11.084 2.693 15.200 hybrid contribution 0.413 0.901 0.182 1.008 sum -9.633 -10.183 2.875 14.309 Atomic orbital electron populations 1.22127 0.93456 1.04124 1.02286 1.22166 0.96301 0.78973 1.05766 1.43726 1.50911 1.12558 1.03883 1.20750 1.08699 0.92275 0.90160 1.20322 1.03175 1.01979 0.87397 1.22791 1.05942 0.97513 0.93761 1.20290 1.15115 0.94946 0.94564 1.18221 0.79082 0.83133 0.86519 1.90487 1.60922 1.84797 1.16850 1.43149 1.61036 1.05457 1.06431 1.19408 0.99779 1.42924 0.81566 0.89723 1.26320 0.94335 0.95645 1.03730 1.69911 1.06921 1.40743 1.37392 0.85381 0.77434 0.79498 0.78494 1.17777 1.21193 1.19206 1.21314 0.94655 0.90552 0.93862 1.22826 0.94156 0.95753 0.88415 1.88065 1.36046 1.74379 1.33192 1.22883 0.85704 0.96325 1.02144 1.20367 1.03027 0.90979 0.90246 1.20313 1.02372 1.01767 0.88417 0.92493 0.93294 0.87990 0.88197 0.87151 0.90134 0.89627 0.90727 0.83372 0.92523 0.89326 0.93073 0.91564 0.95436 0.94512 0.88721 0.92864 0.91045 0.89256 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 10.24 71.98 0.74 -1.87 16 2 C 0.09 1.68 6.08 86.38 0.53 2.21 16 3 N -0.43 -13.62 2.69 -495.39 -1.33 -14.95 16 4 C -0.01 -0.37 6.85 40.97 0.28 -0.09 16 5 C -0.07 -1.70 10.06 71.23 0.72 -0.98 16 6 C -0.18 -7.92 9.08 23.62 0.21 -7.70 16 7 C -0.24 -11.75 6.15 -19.04 -0.12 -11.86 16 8 C 0.54 30.10 7.58 86.59 0.66 30.75 16 9 O -0.64 -36.99 14.57 -4.22 -0.06 -37.05 16 10 N -0.44 -25.01 2.41 -639.49 -1.54 -26.55 16 11 C -0.31 -17.08 6.19 84.07 0.52 -16.55 16 12 H 0.09 4.66 5.79 -2.91 -0.02 4.64 16 13 C 0.00 0.01 5.34 84.93 0.45 0.46 16 14 N -0.91 -52.63 11.42 21.67 0.25 -52.38 16 15 Si 0.97 42.30 28.97 68.60 1.99 44.29 16 16 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 17 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 19 C 0.12 6.39 5.26 86.38 0.45 6.85 16 20 C 0.07 2.99 6.24 71.98 0.45 3.44 16 21 O -0.40 -17.99 10.43 -148.98 -1.55 -19.54 16 22 C 0.03 0.84 11.01 113.37 1.25 2.08 16 23 C 0.07 2.80 6.89 41.79 0.29 3.08 16 24 C -0.07 -2.38 9.19 71.24 0.65 -1.73 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.05 0.93 8.11 -2.39 -0.02 0.91 16 27 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.10 1.64 7.51 -2.39 -0.02 1.63 16 29 H 0.11 1.60 6.90 -2.39 -0.02 1.58 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.09 1.50 6.94 -2.39 -0.02 1.48 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.15 7.11 4.46 -2.91 -0.01 7.09 16 34 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 35 H 0.09 5.05 6.02 -2.39 -0.01 5.04 16 36 H 0.05 2.79 7.53 -2.38 -0.02 2.77 16 37 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 38 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 41 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.09 2.19 7.56 -2.39 -0.02 2.17 16 44 H 0.07 2.63 6.65 -2.39 -0.02 2.61 16 Total: -1.00 -75.44 355.17 5.82 -69.62 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 0.99 Total: 28.49 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 7.08 Total: 8.08 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -2.63 Total: -93.89 kcal Atomic # 8 Polarization: -54.98 SS G_CDS: -1.61 Total: -56.59 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.99 Total: 44.29 kcal Total: -75.44 5.82 -69.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457185430.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.464 kcal (2) G-P(sol) polarization free energy of solvation -75.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds