Wall clock time and date at job start Tue Mar 31 2020 07:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46932 * 2 1 4 4 C 1.50699 * 109.46968 * 239.99917 * 2 1 3 5 5 C 1.34522 * 125.78980 * 99.71535 * 4 2 1 6 6 C 1.41376 * 106.83886 * 179.88969 * 5 4 2 7 7 C 1.34515 * 106.84500 * 0.37260 * 6 5 4 8 8 O 1.34299 * 108.41664 * 359.77052 * 7 6 5 9 9 N 1.46504 * 109.46949 * 120.00028 * 2 1 3 10 10 C 1.46500 * 119.99804 * 60.00333 * 9 2 1 11 11 C 1.34773 * 119.99949 * 239.99743 * 9 2 1 12 12 O 1.21588 * 119.99687 * 0.02562 * 11 9 2 13 13 N 1.34773 * 120.00289 * 180.02562 * 11 9 2 14 14 C 1.46500 * 120.00376 * 180.02562 * 13 11 9 15 15 C 1.52997 * 109.47221 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47257 * 300.00004 * 15 14 13 17 17 C 1.53001 * 109.46864 * 60.00046 * 15 14 13 18 18 C 1.50700 * 109.47102 * 179.97438 * 15 14 13 19 19 H 1.07999 * 120.00114 * 357.01656 * 18 15 14 20 20 C 1.37876 * 120.00136 * 177.00450 * 18 15 14 21 21 N 1.31514 * 119.99676 * 5.54733 * 20 18 15 22 22 Si 1.86801 * 120.00215 * 185.53853 * 20 18 15 23 23 H 1.48505 * 109.46709 * 85.00455 * 22 20 18 24 24 H 1.48497 * 109.47013 * 205.00429 * 22 20 18 25 25 H 1.48496 * 109.47104 * 325.00932 * 22 20 18 26 26 H 1.08997 * 109.47079 * 60.00108 * 1 2 3 27 27 H 1.08999 * 109.46932 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46888 * 299.99892 * 1 2 3 29 29 H 1.07998 * 126.57387 * 0.02562 * 5 4 2 30 30 H 1.08008 * 126.57593 * 180.16398 * 6 5 4 31 31 H 1.07999 * 125.79154 * 179.75270 * 7 6 5 32 32 H 1.08999 * 109.47323 * 89.99776 * 10 9 2 33 33 H 1.09000 * 109.47304 * 329.99355 * 10 9 2 34 34 H 1.09004 * 109.46826 * 209.99643 * 10 9 2 35 35 H 0.97000 * 119.99821 * 359.97438 * 13 11 9 36 36 H 1.09000 * 109.47005 * 300.00033 * 14 13 11 37 37 H 1.09002 * 109.46879 * 59.99949 * 14 13 11 38 38 H 1.08998 * 109.46984 * 53.93731 * 16 15 14 39 39 H 1.09004 * 109.46934 * 173.93158 * 16 15 14 40 40 H 1.08996 * 109.47163 * 293.93309 * 16 15 14 41 41 H 1.09000 * 109.46896 * 60.00357 * 17 15 14 42 42 H 1.09009 * 109.46874 * 179.97438 * 17 15 14 43 43 H 1.08997 * 109.47367 * 299.99451 * 17 15 14 44 44 H 0.97001 * 119.99935 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.4681 -0.1192 -2.3574 6 6 2.8432 -1.1543 -3.2443 7 6 2.6064 -2.3163 -2.6095 8 8 2.1154 -2.0413 -1.3901 9 7 2.0183 -0.6906 1.1962 10 6 1.6644 -2.0932 1.4279 11 6 2.7932 -0.0357 2.0833 12 8 3.0866 1.1285 1.8911 13 7 3.2429 -0.6711 3.1835 14 6 4.0847 0.0410 4.1481 15 6 4.4543 -0.9011 5.2956 16 6 3.1794 -1.3838 5.9901 17 6 5.2199 -2.1042 4.7411 18 6 5.3208 -0.1688 6.2875 19 1 5.6216 0.8501 6.0930 20 6 5.7295 -0.7994 7.4435 21 7 5.4557 -2.0721 7.6302 22 14 6.6720 0.1539 8.7444 23 1 5.7134 0.8558 9.6354 24 1 7.4964 -0.7855 9.5463 25 1 7.5554 1.1493 8.0857 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.5232 0.9426 -2.5472 30 1 3.2402 -1.0349 -4.2417 31 1 2.7812 -3.3031 -3.0122 32 1 2.4157 -2.7377 0.9716 33 1 0.6904 -2.3002 0.9846 34 1 1.6238 -2.2853 2.5002 35 1 3.0085 -1.5998 3.3371 36 1 4.9928 0.3852 3.6533 37 1 3.5391 0.8979 4.5435 38 1 2.5056 -1.8181 5.2516 39 1 3.4347 -2.1366 6.7360 40 1 2.6897 -0.5408 6.4774 41 1 6.1282 -1.7603 4.2464 42 1 5.4836 -2.7752 5.5587 43 1 4.5935 -2.6341 4.0235 44 1 5.7435 -2.5159 8.4433 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459258308.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:32 Heat of formation + Delta-G solvation = -10.586013 kcal Electronic energy + Delta-G solvation = -24393.698137 eV Core-core repulsion = 20927.345743 eV Total energy + Delta-G solvation = -3466.352394 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.67810 -39.89575 -36.83433 -35.73273 -33.60755 -33.07393 -31.82626 -30.44316 -28.62122 -26.89586 -25.71322 -25.60775 -24.90483 -23.18896 -21.86464 -20.68876 -19.50449 -18.85183 -17.87752 -17.44465 -16.25883 -16.02677 -15.74409 -15.40564 -14.77136 -14.52010 -14.08434 -13.67840 -13.52989 -13.27550 -12.94958 -12.85389 -12.78360 -12.56221 -12.45370 -12.41190 -12.06622 -11.89430 -11.45317 -11.39754 -11.17373 -10.84800 -10.67656 -10.36241 -10.19695 -10.00870 -9.75567 -9.60592 -9.29501 -8.78351 -8.75110 -8.57995 -8.38957 -8.16608 -6.00999 -4.09571 1.61338 2.48372 2.81256 3.01060 3.30420 3.36744 3.40787 3.59238 4.33008 4.43028 4.51738 4.88605 4.90574 5.02917 5.09875 5.13810 5.26213 5.45658 5.50175 5.61980 5.67903 5.75983 5.82521 5.91600 6.05152 6.20398 6.35227 6.38508 6.50895 6.54699 6.81114 6.83554 6.91645 7.04804 7.05537 7.10522 7.24000 7.39809 7.57642 7.72010 8.01245 8.13261 8.36735 8.42698 8.89530 9.00097 9.55701 11.01120 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029997 B = 0.003265 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.193031 B = 8574.109091 C = 8672.176034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.237 3.763 3 H 0.129 0.871 4 C -0.013 4.013 5 C -0.206 4.206 6 C -0.213 4.213 7 C -0.047 4.047 8 O -0.168 6.168 9 N -0.633 5.633 10 C 0.081 3.919 11 C 0.702 3.298 12 O -0.597 6.597 13 N -0.730 5.730 14 C 0.149 3.851 15 C 0.056 3.944 16 C -0.127 4.127 17 C -0.129 4.129 18 C -0.507 4.507 19 H 0.058 0.942 20 C 0.067 3.933 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.288 1.288 25 H -0.275 1.275 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.200 0.800 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.395 0.605 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.005 0.995 39 H 0.081 0.919 40 H 0.029 0.971 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.004 0.996 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.828 -2.648 -17.511 20.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.132 3.868 3 H 0.147 0.853 4 C -0.065 4.065 5 C -0.226 4.226 6 C -0.233 4.233 7 C -0.115 4.115 8 O -0.064 6.064 9 N -0.371 5.371 10 C -0.062 4.062 11 C 0.403 3.597 12 O -0.476 6.476 13 N -0.385 5.385 14 C 0.026 3.974 15 C 0.055 3.945 16 C -0.185 4.185 17 C -0.187 4.187 18 C -0.545 4.545 19 H 0.076 0.924 20 C -0.134 4.134 21 N -0.524 5.524 22 Si 0.721 3.279 23 H -0.206 1.206 24 H -0.214 1.214 25 H -0.200 1.200 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.166 0.834 30 H 0.164 0.836 31 H 0.217 0.783 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.232 0.768 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.024 0.976 39 H 0.100 0.900 40 H 0.048 0.952 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.023 0.977 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.636 -2.155 -17.221 19.851 hybrid contribution 0.563 -0.033 0.450 0.721 sum -9.073 -2.188 -16.771 19.193 Atomic orbital electron populations 1.22195 0.93570 1.02922 1.03149 1.19416 0.93882 0.96030 0.77470 0.85295 1.22982 1.04519 0.80729 0.98244 1.21585 1.06196 1.00717 0.94062 1.21804 1.07357 0.92280 1.01830 1.24037 1.03174 1.00355 0.83915 1.84054 1.64835 1.24608 1.32859 1.47036 1.54452 1.12580 1.23034 1.21700 1.01249 0.81679 1.01578 1.15983 0.78707 0.84769 0.80237 1.90864 1.63519 1.15628 1.77636 1.45655 1.54448 1.15863 1.22514 1.21602 0.91983 0.95319 0.88524 1.18365 0.93474 0.92096 0.90555 1.21791 0.95947 1.01030 0.99734 1.21835 0.97750 0.99704 0.99367 1.20970 1.30942 0.99166 1.03440 0.92385 1.24874 0.95761 0.94769 0.98030 1.69828 1.46930 1.09148 1.26495 0.86593 0.79840 0.79786 0.81688 1.20633 1.21366 1.19950 0.90996 0.91894 0.90934 0.83434 0.83600 0.78313 0.92498 0.90942 0.91230 0.76838 0.92920 0.92853 0.97639 0.90038 0.95157 0.95466 0.89623 0.97715 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.15 37.16 0.34 -1.21 16 2 C 0.24 3.00 3.11 -69.08 -0.21 2.78 16 3 H 0.13 1.81 6.89 -51.93 -0.36 1.45 16 4 C -0.01 -0.16 6.07 -35.62 -0.22 -0.38 16 5 C -0.21 -2.37 10.80 -39.70 -0.43 -2.80 16 6 C -0.21 -2.17 10.91 -39.71 -0.43 -2.60 16 7 C -0.05 -0.46 12.09 29.42 0.36 -0.10 16 8 O -0.17 -2.00 8.90 5.73 0.05 -1.95 16 9 N -0.63 -9.17 2.75 -181.00 -0.50 -9.67 16 10 C 0.08 0.95 8.77 59.85 0.53 1.47 16 11 C 0.70 13.06 8.28 -86.92 -0.72 12.34 16 12 O -0.60 -13.09 15.67 5.29 0.08 -13.01 16 13 N -0.73 -13.68 4.77 -65.23 -0.31 -13.99 16 14 C 0.15 3.25 4.50 -4.04 -0.02 3.24 16 15 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 16 C -0.13 -2.88 8.03 37.16 0.30 -2.58 16 17 C -0.13 -2.95 8.10 37.16 0.30 -2.65 16 18 C -0.51 -13.38 8.01 -34.44 -0.28 -13.66 16 19 H 0.06 1.55 7.75 -52.49 -0.41 1.14 16 20 C 0.07 1.77 5.13 -17.82 -0.09 1.68 16 21 N -0.89 -23.67 9.45 55.43 0.52 -23.15 16 22 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.57 6.66 -51.93 -0.35 0.22 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 31 H 0.20 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.06 0.67 7.57 -51.93 -0.39 0.28 16 33 H 0.07 0.70 6.43 -51.93 -0.33 0.36 16 34 H 0.07 0.79 6.36 -51.93 -0.33 0.46 16 35 H 0.39 6.74 3.89 -40.82 -0.16 6.58 16 36 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.00 0.09 6.71 -51.93 -0.35 -0.26 16 39 H 0.08 2.01 6.25 -51.93 -0.32 1.69 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 2.15 6.10 -51.92 -0.32 1.84 16 43 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 44 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 348.69 15.07 5.25 5.25 Total: -1.00 -30.26 348.69 -7.19 -37.45 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.61 Total: 6.49 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -0.66 Total: -3.23 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -0.29 Total: -46.80 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.13 Total: -14.96 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.26 -7.19 -37.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459258308.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.863 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds