Wall clock time and date at job start Tue Mar 31 2020 07:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46932 * 2 1 4 4 C 1.50699 * 109.46968 * 239.99917 * 2 1 3 5 5 C 1.34522 * 125.78980 * 99.71535 * 4 2 1 6 6 C 1.41376 * 106.83886 * 179.88969 * 5 4 2 7 7 C 1.34515 * 106.84500 * 0.37260 * 6 5 4 8 8 O 1.34299 * 108.41664 * 359.77052 * 7 6 5 9 9 N 1.46504 * 109.46949 * 120.00028 * 2 1 3 10 10 C 1.46500 * 119.99804 * 60.00333 * 9 2 1 11 11 C 1.34773 * 119.99949 * 239.99743 * 9 2 1 12 12 O 1.21588 * 119.99687 * 0.02562 * 11 9 2 13 13 N 1.34773 * 120.00289 * 180.02562 * 11 9 2 14 14 C 1.46500 * 120.00376 * 180.02562 * 13 11 9 15 15 C 1.52997 * 109.47221 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47257 * 300.00004 * 15 14 13 17 17 C 1.53001 * 109.46864 * 60.00046 * 15 14 13 18 18 C 1.50700 * 109.47102 * 179.97438 * 15 14 13 19 19 H 1.07999 * 120.00114 * 357.01656 * 18 15 14 20 20 C 1.37876 * 120.00136 * 177.00450 * 18 15 14 21 21 N 1.31514 * 119.99676 * 5.54733 * 20 18 15 22 22 Si 1.86801 * 120.00215 * 185.53853 * 20 18 15 23 23 H 1.48505 * 109.46709 * 85.00455 * 22 20 18 24 24 H 1.48497 * 109.47013 * 205.00429 * 22 20 18 25 25 H 1.48496 * 109.47104 * 325.00932 * 22 20 18 26 26 H 1.08997 * 109.47079 * 60.00108 * 1 2 3 27 27 H 1.08999 * 109.46932 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46888 * 299.99892 * 1 2 3 29 29 H 1.07998 * 126.57387 * 0.02562 * 5 4 2 30 30 H 1.08008 * 126.57593 * 180.16398 * 6 5 4 31 31 H 1.07999 * 125.79154 * 179.75270 * 7 6 5 32 32 H 1.08999 * 109.47323 * 89.99776 * 10 9 2 33 33 H 1.09000 * 109.47304 * 329.99355 * 10 9 2 34 34 H 1.09004 * 109.46826 * 209.99643 * 10 9 2 35 35 H 0.97000 * 119.99821 * 359.97438 * 13 11 9 36 36 H 1.09000 * 109.47005 * 300.00033 * 14 13 11 37 37 H 1.09002 * 109.46879 * 59.99949 * 14 13 11 38 38 H 1.08998 * 109.46984 * 53.93731 * 16 15 14 39 39 H 1.09004 * 109.46934 * 173.93158 * 16 15 14 40 40 H 1.08996 * 109.47163 * 293.93309 * 16 15 14 41 41 H 1.09000 * 109.46896 * 60.00357 * 17 15 14 42 42 H 1.09009 * 109.46874 * 179.97438 * 17 15 14 43 43 H 1.08997 * 109.47367 * 299.99451 * 17 15 14 44 44 H 0.97001 * 119.99935 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.4681 -0.1192 -2.3574 6 6 2.8432 -1.1543 -3.2443 7 6 2.6064 -2.3163 -2.6095 8 8 2.1154 -2.0413 -1.3901 9 7 2.0183 -0.6906 1.1962 10 6 1.6644 -2.0932 1.4279 11 6 2.7932 -0.0357 2.0833 12 8 3.0866 1.1285 1.8911 13 7 3.2429 -0.6711 3.1835 14 6 4.0847 0.0410 4.1481 15 6 4.4543 -0.9011 5.2956 16 6 3.1794 -1.3838 5.9901 17 6 5.2199 -2.1042 4.7411 18 6 5.3208 -0.1688 6.2875 19 1 5.6216 0.8501 6.0930 20 6 5.7295 -0.7994 7.4435 21 7 5.4557 -2.0721 7.6302 22 14 6.6720 0.1539 8.7444 23 1 5.7134 0.8558 9.6354 24 1 7.4964 -0.7855 9.5463 25 1 7.5554 1.1493 8.0857 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.5232 0.9426 -2.5472 30 1 3.2402 -1.0349 -4.2417 31 1 2.7812 -3.3031 -3.0122 32 1 2.4157 -2.7377 0.9716 33 1 0.6904 -2.3002 0.9846 34 1 1.6238 -2.2853 2.5002 35 1 3.0085 -1.5998 3.3371 36 1 4.9928 0.3852 3.6533 37 1 3.5391 0.8979 4.5435 38 1 2.5056 -1.8181 5.2516 39 1 3.4347 -2.1366 6.7360 40 1 2.6897 -0.5408 6.4774 41 1 6.1282 -1.7603 4.2464 42 1 5.4836 -2.7752 5.5587 43 1 4.5935 -2.6341 4.0235 44 1 5.7435 -2.5159 8.4433 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459258308.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:32 Heat of formation + Delta-G solvation = -27.612085 kcal Electronic energy + Delta-G solvation = -24394.436443 eV Core-core repulsion = 20927.345743 eV Total energy + Delta-G solvation = -3467.090700 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.50508 -41.29916 -38.45012 -37.12819 -35.18869 -34.03722 -33.20576 -31.98727 -29.42300 -27.96404 -27.57175 -27.45248 -26.66291 -24.25698 -22.68105 -21.81311 -20.69211 -20.61749 -19.26832 -18.34948 -17.82029 -17.26115 -16.99491 -16.67014 -16.62526 -15.70126 -15.49953 -15.07113 -14.84124 -14.59582 -14.27834 -14.09928 -14.00704 -13.74227 -13.53925 -13.30579 -13.23523 -13.18533 -13.06144 -12.82080 -12.68478 -12.59080 -12.30983 -12.24097 -12.13489 -11.48466 -11.34998 -11.12645 -10.82563 -10.71425 -10.39071 -10.15497 -9.58705 -9.39964 -8.02341 -6.16663 0.76832 1.43962 1.46152 1.53220 1.57901 1.79491 2.00700 2.22697 2.46746 3.05765 3.21758 3.60763 4.05150 4.10692 4.17390 4.22862 4.32596 4.40825 4.52392 4.59236 4.68982 4.71117 4.78750 4.82572 4.93921 4.99570 5.01897 5.04775 5.09028 5.15823 5.19156 5.25702 5.37137 5.43108 5.59480 5.62734 5.66814 5.68913 5.89102 6.13546 6.20868 6.23441 6.43514 6.86878 6.96662 7.50510 7.53726 8.97405 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029997 B = 0.003265 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.193031 B = 8574.109091 C = 8672.176034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.233 3.767 3 H 0.108 0.892 4 C -0.034 4.034 5 C -0.216 4.216 6 C -0.227 4.227 7 C -0.042 4.042 8 O -0.178 6.178 9 N -0.625 5.625 10 C 0.077 3.923 11 C 0.698 3.302 12 O -0.637 6.637 13 N -0.724 5.724 14 C 0.166 3.834 15 C 0.052 3.948 16 C -0.116 4.116 17 C -0.118 4.118 18 C -0.531 4.531 19 H 0.045 0.955 20 C 0.030 3.970 21 N -0.898 5.898 22 Si 0.945 3.055 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.277 1.277 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.153 0.847 30 H 0.167 0.833 31 H 0.237 0.763 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.405 0.595 36 H 0.033 0.967 37 H 0.038 0.962 38 H 0.035 0.965 39 H 0.061 0.939 40 H 0.019 0.981 41 H 0.015 0.985 42 H 0.064 0.936 43 H 0.032 0.968 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.780 -3.942 -18.796 22.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.129 3.871 3 H 0.126 0.874 4 C -0.085 4.085 5 C -0.236 4.236 6 C -0.246 4.246 7 C -0.109 4.109 8 O -0.074 6.074 9 N -0.361 5.361 10 C -0.065 4.065 11 C 0.399 3.601 12 O -0.519 6.519 13 N -0.380 5.380 14 C 0.042 3.958 15 C 0.051 3.949 16 C -0.174 4.174 17 C -0.175 4.175 18 C -0.569 4.569 19 H 0.063 0.937 20 C -0.170 4.170 21 N -0.537 5.537 22 Si 0.772 3.228 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.202 1.202 26 H 0.107 0.893 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.171 0.829 30 H 0.185 0.815 31 H 0.253 0.747 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.243 0.757 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.080 0.920 40 H 0.038 0.962 41 H 0.035 0.965 42 H 0.083 0.917 43 H 0.051 0.949 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.622 -3.487 -18.536 21.646 hybrid contribution 0.857 0.344 0.737 1.181 sum -9.765 -3.143 -17.799 20.544 Atomic orbital electron populations 1.22135 0.91120 1.03843 1.03753 1.19508 0.95672 0.94933 0.76967 0.87430 1.22843 1.06146 0.81249 0.98308 1.21884 1.05726 1.01577 0.94399 1.22136 1.07717 0.92011 1.02770 1.24824 1.01336 1.01875 0.82885 1.84033 1.65236 1.24150 1.33954 1.47082 1.52980 1.13580 1.22503 1.21902 1.02662 0.79765 1.02179 1.16126 0.78964 0.84422 0.80552 1.90835 1.65017 1.17503 1.78517 1.45370 1.54277 1.16077 1.22309 1.21149 0.91472 0.94726 0.88461 1.18360 0.93594 0.92314 0.90603 1.21623 0.95921 1.00027 0.99804 1.21666 0.97746 0.99090 0.99040 1.21247 1.31937 0.99010 1.04745 0.93709 1.25441 0.96555 0.95552 0.99452 1.69925 1.47224 1.09762 1.26754 0.85776 0.78757 0.78683 0.79600 1.20359 1.20856 1.20163 0.89340 0.90714 0.91380 0.82894 0.81531 0.74715 0.92253 0.88419 0.90798 0.75680 0.94823 0.94352 0.94580 0.92032 0.96193 0.96529 0.91750 0.94867 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.15 71.98 0.66 -1.99 16 2 C 0.23 5.72 3.11 44.24 0.14 5.85 16 3 H 0.11 3.09 6.89 -2.39 -0.02 3.07 16 4 C -0.03 -0.80 6.07 24.83 0.15 -0.65 16 5 C -0.22 -4.74 10.80 22.19 0.24 -4.50 16 6 C -0.23 -4.11 10.91 22.19 0.24 -3.87 16 7 C -0.04 -0.70 12.09 66.97 0.81 0.11 16 8 O -0.18 -3.83 8.90 -2.43 -0.02 -3.85 16 9 N -0.62 -17.40 2.75 -844.84 -2.33 -19.72 16 10 C 0.08 1.61 8.77 127.77 1.12 2.73 16 11 C 0.70 25.83 8.28 179.06 1.48 27.31 16 12 O -0.64 -28.48 15.67 -3.99 -0.06 -28.55 16 13 N -0.72 -26.68 4.77 -478.55 -2.28 -28.96 16 14 C 0.17 7.36 4.50 86.38 0.39 7.75 16 15 C 0.05 2.45 0.50 -52.93 -0.03 2.42 16 16 C -0.12 -5.17 8.03 71.98 0.58 -4.59 16 17 C -0.12 -5.33 8.10 71.98 0.58 -4.75 16 18 C -0.53 -28.42 8.01 25.60 0.20 -28.22 16 19 H 0.04 2.45 7.75 -2.91 -0.02 2.43 16 20 C 0.03 1.59 5.13 84.65 0.43 2.03 16 21 N -0.90 -47.99 9.45 21.45 0.20 -47.79 16 22 Si 0.95 42.84 29.54 68.60 2.03 44.86 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 26 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.07 1.14 6.66 -2.39 -0.02 1.12 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 30 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 31 H 0.24 1.86 8.06 -2.91 -0.02 1.84 16 32 H 0.06 1.25 7.57 -2.39 -0.02 1.23 16 33 H 0.10 1.57 6.43 -2.39 -0.02 1.55 16 34 H 0.07 1.49 6.36 -2.38 -0.02 1.47 16 35 H 0.40 13.08 3.89 -92.71 -0.36 12.72 16 36 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.04 1.34 6.71 -2.39 -0.02 1.32 16 39 H 0.06 3.01 6.25 -2.39 -0.01 2.99 16 40 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.06 3.21 6.10 -2.38 -0.01 3.20 16 43 H 0.03 1.27 6.86 -2.39 -0.02 1.25 16 44 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 Total: -1.00 -65.52 348.69 5.18 -60.34 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 0.64 Total: 24.03 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 7.01 Total: -0.36 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -4.41 Total: -96.47 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.08 Total: -32.39 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -65.52 5.18 -60.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459258308.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.725 kcal (2) G-P(sol) polarization free energy of solvation -65.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds